Wall clock time and date at job start Tue Mar 31 2020 21:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37357 * 125.83298 * 2 1 4 4 N 1.29401 * 108.83313 * 180.02562 * 3 2 1 5 5 N 1.40172 * 108.13535 * 0.02562 * 4 3 2 6 6 C 1.46499 * 126.34721 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47159 * 270.02001 * 6 5 4 8 8 C 1.50703 * 109.47520 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99478 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00262 * 179.97438 * 8 7 6 11 11 C 1.46930 * 120.62917 * 354.06269 * 10 8 7 12 12 C 1.52758 * 109.00475 * 233.57886 * 11 10 8 13 13 C 1.53040 * 109.38535 * 305.58832 * 12 11 10 14 14 C 1.53042 * 109.53652 * 61.24087 * 13 12 11 15 15 C 1.46927 * 120.62976 * 174.33467 * 10 8 7 16 16 H 1.08992 * 109.58645 * 246.29986 * 15 10 8 17 17 C 1.52997 * 109.58497 * 6.58907 * 15 10 8 18 18 N 1.46502 * 109.47057 * 292.89321 * 17 15 10 19 19 C 1.36939 * 119.99683 * 185.83156 * 18 17 15 20 20 H 1.07999 * 120.00360 * 359.97438 * 19 18 17 21 21 C 1.38819 * 119.99589 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99895 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99840 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47255 * 90.00150 * 23 21 19 25 25 H 1.48502 * 109.47338 * 210.00051 * 23 21 19 26 26 H 1.48501 * 109.47376 * 330.00081 * 23 21 19 27 27 C 1.34816 * 125.83484 * 180.33680 * 2 1 3 28 28 O 1.21821 * 126.30192 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.46932 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47053 * 119.97320 * 1 2 3 31 31 H 1.08999 * 109.47097 * 239.97370 * 1 2 3 32 32 H 1.08004 * 125.58723 * 0.04000 * 3 2 1 33 33 H 1.09007 * 109.47571 * 30.01872 * 6 5 4 34 34 H 1.08998 * 109.47308 * 150.01971 * 6 5 4 35 35 H 1.08998 * 109.46797 * 300.00442 * 7 6 5 36 36 H 1.09003 * 109.46787 * 60.00217 * 7 6 5 37 37 H 1.08994 * 109.58607 * 353.41858 * 11 10 8 38 38 H 1.09001 * 109.58286 * 113.83963 * 11 10 8 39 39 H 1.09007 * 109.56327 * 185.55132 * 12 11 10 40 40 H 1.08995 * 109.38638 * 65.51754 * 12 11 10 41 41 H 1.09002 * 109.46114 * 301.21875 * 13 12 11 42 42 H 1.09000 * 109.44651 * 181.25201 * 13 12 11 43 43 H 1.09003 * 109.49681 * 178.68050 * 14 13 12 44 44 H 1.09005 * 109.52214 * 58.60339 * 14 13 12 45 45 H 1.08995 * 109.47417 * 52.89286 * 17 15 10 46 46 H 1.09002 * 109.46565 * 172.89410 * 17 15 10 47 47 H 0.96997 * 120.00010 * 5.83208 * 18 17 15 48 48 H 0.97002 * 119.99825 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7353 -0.0005 5 7 3.5344 -0.6662 -0.0015 6 6 4.7313 -1.5109 -0.0019 7 6 5.1486 -1.8036 -1.4445 8 6 6.3803 -2.6720 -1.4449 9 8 6.8752 -3.0227 -0.3947 10 7 6.9311 -3.0597 -2.6123 11 6 6.2716 -2.7541 -3.8892 12 6 6.1025 -4.0477 -4.6839 13 6 7.4611 -4.7373 -4.8269 14 6 8.0056 -5.0879 -3.4403 15 6 8.1993 -3.8012 -2.6318 16 1 8.9733 -3.1893 -3.0948 17 6 8.6105 -4.1519 -1.2004 18 7 8.9426 -2.9243 -0.4731 19 6 9.4543 -2.9970 0.7950 20 1 9.6126 -3.9593 1.2591 21 6 9.7695 -1.8338 1.4839 22 7 9.5760 -0.6611 0.9185 23 14 10.4668 -1.9329 3.2140 24 1 11.9488 -1.9996 3.1474 25 1 10.0595 -0.7286 3.9816 26 1 9.9464 -3.1492 3.8886 27 6 2.2543 -1.0929 -0.0064 28 8 1.8806 -2.2524 -0.0128 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5134 -0.8903 31 1 -0.3633 -0.5142 0.8897 32 1 1.9250 2.1373 0.0006 33 1 5.5412 -0.9938 0.5128 34 1 4.5148 -2.4480 0.5110 35 1 4.3388 -2.3206 -1.9591 36 1 5.3652 -0.8664 -1.9573 37 1 5.2932 -2.3131 -3.6988 38 1 6.8847 -2.0559 -4.4591 39 1 5.7045 -3.8192 -5.6726 40 1 5.4130 -4.7079 -4.1578 41 1 8.1572 -4.0672 -5.3316 42 1 7.3454 -5.6491 -5.4128 43 1 8.9623 -5.6000 -3.5439 44 1 7.2988 -5.7384 -2.9252 45 1 7.7860 -4.6592 -0.6995 46 1 9.4808 -4.8078 -1.2228 47 1 8.8001 -2.0601 -0.8898 48 1 9.7966 0.1517 1.3997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713265085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:47 Heat of formation + Delta-G solvation = 41.692598 kcal Electronic energy + Delta-G solvation = -30782.767087 eV Core-core repulsion = 26683.102552 eV Total energy + Delta-G solvation = -4099.664535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.41244 -41.49292 -38.43662 -38.33835 -36.86004 -36.19624 -34.20674 -33.62730 -33.29259 -31.52346 -30.78073 -28.36402 -27.63037 -26.16718 -25.42496 -24.30004 -23.48376 -22.66746 -22.04839 -21.51024 -19.96987 -19.16693 -18.57412 -17.83169 -17.53565 -17.10284 -16.86615 -16.67563 -16.64778 -16.24367 -15.58876 -15.49114 -15.28331 -15.11879 -14.92958 -14.83721 -14.40984 -14.18731 -13.94252 -13.84674 -13.62757 -13.48641 -13.43668 -13.21343 -13.07609 -12.85979 -12.79908 -12.69643 -12.37864 -12.15333 -12.04946 -11.86015 -11.71385 -11.47866 -11.36063 -11.32490 -11.04468 -10.84220 -9.91898 -9.65190 -9.45100 -8.56497 -7.82131 -4.99843 0.72371 1.11483 1.43231 1.45834 1.53819 1.53872 1.94181 2.10071 2.32252 2.62342 3.43877 3.50815 3.65255 3.74222 3.84708 3.91824 3.99195 4.05163 4.12813 4.14605 4.28087 4.33089 4.35996 4.44093 4.50482 4.52603 4.62454 4.67272 4.71875 4.76825 4.80971 4.88931 4.96208 4.99842 5.05970 5.09596 5.12752 5.15719 5.24522 5.34189 5.51480 5.54893 5.70794 5.85700 6.38784 6.64293 6.64603 6.93433 7.45059 7.54618 8.24614 8.48446 9.42232 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008012 B = 0.004485 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3494.095713 B = 6241.455263 C = 9063.012428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.556 5.556 3 C 0.279 3.721 4 N -0.323 5.323 5 N -0.456 5.456 6 C 0.188 3.812 7 C -0.128 4.128 8 C 0.474 3.526 9 O -0.499 6.499 10 N -0.613 5.613 11 C 0.104 3.896 12 C -0.129 4.129 13 C -0.112 4.112 14 C -0.120 4.120 15 C 0.148 3.852 16 H 0.063 0.937 17 C 0.164 3.836 18 N -0.699 5.699 19 C -0.212 4.212 20 H 0.059 0.941 21 C -0.079 4.079 22 N -0.969 5.969 23 Si 0.962 3.038 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.281 1.281 27 C 0.626 3.374 28 O -0.600 6.600 29 H 0.144 0.856 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.293 0.707 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.018 0.982 46 H 0.014 0.986 47 H 0.368 0.632 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.932 3.040 -14.266 24.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.284 5.284 3 C -0.019 4.019 4 N -0.144 5.144 5 N -0.275 5.275 6 C 0.066 3.934 7 C -0.169 4.169 8 C 0.260 3.740 9 O -0.372 6.372 10 N -0.351 5.351 11 C -0.017 4.017 12 C -0.167 4.167 13 C -0.149 4.149 14 C -0.159 4.159 15 C 0.044 3.956 16 H 0.081 0.919 17 C 0.038 3.962 18 N -0.340 5.340 19 C -0.345 4.345 20 H 0.077 0.923 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.793 3.207 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.206 1.206 27 C 0.325 3.675 28 O -0.477 6.477 29 H 0.162 0.838 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.308 0.692 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.035 0.965 46 H 0.032 0.968 47 H 0.201 0.799 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -18.870 2.182 -13.507 23.308 hybrid contribution -0.110 0.037 1.284 1.290 sum -18.980 2.220 -12.223 22.684 Atomic orbital electron populations 1.22183 0.71522 1.07295 1.03595 1.46191 1.10230 1.05657 1.66328 1.27248 0.84215 0.96182 0.94220 1.77129 1.20866 0.90735 1.25688 1.49001 1.05890 1.04129 1.68486 1.20823 0.83005 0.92382 0.97175 1.21775 0.96623 1.00971 0.97533 1.20622 0.86039 0.82949 0.84433 1.91156 1.59260 1.54236 1.32507 1.47943 1.23391 1.57508 1.06216 1.21828 0.98158 0.98265 0.83490 1.21833 0.97777 0.96013 1.01059 1.21488 0.96670 1.01545 0.95218 1.21863 1.02266 0.95257 0.96505 1.21354 0.85014 0.93567 0.95652 0.91880 1.20884 0.95587 0.89436 0.90319 1.42324 1.74196 1.03246 1.14276 1.19449 1.30138 0.92035 0.92841 0.92301 1.25284 1.04919 0.95119 1.01727 1.69804 1.57307 0.96611 1.38483 0.85278 0.78063 0.76230 0.81115 1.21321 1.22431 1.20636 1.17111 0.82613 0.85677 0.82144 1.91029 1.78533 1.17229 1.60930 0.83817 0.90591 0.91154 0.69160 0.90492 0.90425 0.88075 0.88091 0.89238 0.90701 0.88042 0.92398 0.91078 0.89789 0.89971 0.92413 0.96464 0.96815 0.79950 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 11.08 127.77 1.42 2.23 16 2 N -0.56 -10.50 3.14 -683.68 -2.15 -12.65 16 3 C 0.28 4.18 12.61 179.82 2.27 6.44 16 4 N -0.32 -8.75 12.53 -59.41 -0.74 -9.49 16 5 N -0.46 -15.01 3.63 -478.01 -1.73 -16.74 16 6 C 0.19 7.17 5.68 86.38 0.49 7.66 16 7 C -0.13 -4.23 4.44 29.85 0.13 -4.10 16 8 C 0.47 18.80 6.96 87.66 0.61 19.41 16 9 O -0.50 -25.29 9.65 -3.04 -0.03 -25.31 16 10 N -0.61 -20.05 2.98 -795.87 -2.37 -22.42 16 11 C 0.10 2.32 6.30 86.22 0.54 2.86 16 12 C -0.13 -2.25 6.06 30.53 0.19 -2.07 16 13 C -0.11 -2.03 5.89 30.62 0.18 -1.85 16 14 C -0.12 -3.05 5.37 30.67 0.16 -2.89 16 15 C 0.15 5.09 2.95 44.97 0.13 5.22 16 16 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 17 C 0.16 7.50 4.87 86.38 0.42 7.92 16 18 N -0.70 -39.19 3.15 -343.45 -1.08 -40.28 16 19 C -0.21 -13.11 9.69 84.03 0.81 -12.29 16 20 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 21 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 22 N -0.97 -63.40 13.06 21.65 0.28 -63.12 16 23 Si 0.96 50.73 29.55 68.60 2.03 52.75 16 24 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 25 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 26 H -0.28 -14.40 7.11 99.48 0.71 -13.70 16 27 C 0.63 19.62 8.61 178.99 1.54 21.16 16 28 O -0.60 -23.21 17.77 -4.74 -0.08 -23.30 16 29 H 0.14 -0.24 8.07 -2.39 -0.02 -0.25 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.29 0.07 8.06 -2.91 -0.02 0.04 16 33 H 0.08 3.46 8.10 -2.38 -0.02 3.44 16 34 H 0.08 3.23 8.07 -2.39 -0.02 3.21 16 35 H 0.10 2.96 7.44 -2.39 -0.02 2.94 16 36 H 0.10 3.11 8.13 -2.39 -0.02 3.10 16 37 H 0.09 1.78 5.96 -2.39 -0.01 1.77 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.02 0.88 6.50 -2.39 -0.02 0.87 16 46 H 0.01 0.63 8.14 -2.39 -0.02 0.62 16 47 H 0.37 21.91 6.82 -92.71 -0.63 21.28 16 48 H 0.24 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -93.02 385.62 3.82 -89.20 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.33 Total: 26.13 kcal Atomic # 6 Polarization: 35.86 SS G_CDS: 9.36 Total: 45.22 kcal Atomic # 7 Polarization: -156.90 SS G_CDS: -7.79 Total: -164.69 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -0.11 Total: -48.61 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.03 Total: 52.75 kcal Total: -93.02 3.82 -89.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713265085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.895 kcal (2) G-P(sol) polarization free energy of solvation -93.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds