Wall clock time and date at job start Tue Mar 31 2020 21:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00114 * 2 1 4 4 C 1.52993 * 109.47304 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47204 * 180.02562 * 4 3 2 6 6 C 1.34811 * 126.59551 * 125.27226 * 5 4 3 7 7 C 1.36603 * 106.83628 * 180.10741 * 6 5 4 8 8 C 1.47523 * 125.76763 * 179.90022 * 7 6 5 9 9 O 1.21595 * 120.00337 * 359.71046 * 8 7 6 10 10 N 1.34775 * 119.99857 * 179.71336 * 8 7 6 11 11 C 1.46497 * 120.00083 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47062 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46967 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.78170 * 308.24051 * 13 12 11 15 15 C 1.55158 * 110.72145 * 184.99928 * 13 12 11 16 16 C 1.54909 * 101.61642 * 206.15534 * 15 13 12 17 17 N 1.47423 * 104.83351 * 36.99324 * 16 15 13 18 18 C 1.36936 * 125.64594 * 155.90840 * 17 16 15 19 19 H 1.08007 * 120.00033 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00281 * 359.97114 * 18 17 16 21 21 N 1.31616 * 120.00050 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.47129 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47513 * 119.99988 * 22 20 18 25 25 H 1.48502 * 109.47290 * 240.00176 * 22 20 18 26 26 C 1.47016 * 108.70440 * 335.86643 * 17 16 15 27 27 N 1.34400 * 108.46083 * 359.63145 * 7 6 5 28 28 N 1.28770 * 109.52218 * 0.23038 * 27 7 6 29 29 H 1.08997 * 109.47274 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47109 * 299.99685 * 1 2 3 31 31 H 1.09001 * 109.47150 * 59.99891 * 1 2 3 32 32 H 1.08998 * 109.46864 * 59.99916 * 3 2 1 33 33 H 1.09002 * 109.47238 * 300.00517 * 3 2 1 34 34 H 1.08998 * 109.47490 * 59.99979 * 4 3 2 35 35 H 1.09001 * 109.46741 * 299.99897 * 4 3 2 36 36 H 1.07993 * 126.58453 * 359.96516 * 6 5 4 37 37 H 0.97002 * 120.00212 * 359.97438 * 10 8 7 38 38 H 1.09007 * 109.46821 * 60.00505 * 11 10 8 39 39 H 1.08996 * 109.47722 * 300.00172 * 11 10 8 40 40 H 1.08996 * 109.47404 * 60.00468 * 12 11 10 41 41 H 1.09005 * 109.47092 * 300.00001 * 12 11 10 42 42 H 1.09002 * 111.00366 * 88.06052 * 15 13 12 43 43 H 1.09002 * 111.00429 * 324.25114 * 15 13 12 44 44 H 1.09000 * 110.36449 * 155.82966 * 16 15 13 45 45 H 1.09002 * 110.36579 * 278.03887 * 16 15 13 46 46 H 0.96996 * 120.00056 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.88531 * 120.47268 * 26 17 16 48 48 H 1.08998 * 109.88872 * 241.64988 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0295 3.0025 0.8836 7 6 5.3068 4.2864 0.5087 8 6 6.2400 5.2019 1.1923 9 8 6.8370 4.8319 2.1849 10 7 6.4308 6.4484 0.7168 11 6 7.3570 7.3578 1.3960 12 6 7.3882 8.6982 0.6589 13 6 8.3561 9.6477 1.3679 14 1 8.1297 9.7066 2.4325 15 6 8.3167 11.0567 0.7195 16 6 9.7294 11.5950 1.0571 17 7 10.6170 10.4234 0.9433 18 6 11.9626 10.4630 0.6927 19 1 12.5272 9.5444 0.6282 20 6 12.6012 11.6835 0.5215 21 7 11.9134 12.8029 0.6005 22 14 14.4367 11.7373 0.1788 23 1 14.9738 10.3533 0.1398 24 1 14.6771 12.3991 -1.1286 25 1 15.1187 12.5023 1.2536 26 6 9.8183 9.2056 1.1445 27 7 4.5902 4.5727 -0.5917 28 7 3.8814 3.5496 -0.9218 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8567 0.6439 -0.8908 35 1 3.8573 0.6436 0.8891 36 1 5.4476 2.4738 1.7274 37 1 5.9548 6.7436 -0.0752 38 1 8.3562 6.9219 1.4005 39 1 7.0247 7.5154 2.4220 40 1 6.3891 9.1339 0.6547 41 1 7.7204 8.5409 -0.3673 42 1 7.5436 11.6752 1.1754 43 1 8.1726 10.9867 -0.3587 44 1 10.0231 12.3641 0.3427 45 1 9.7514 11.9926 2.0718 46 1 12.3596 13.6557 0.4805 47 1 9.8818 8.5704 0.2610 48 1 10.1802 8.6651 2.0191 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713727311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:30 Heat of formation + Delta-G solvation = 37.816020 kcal Electronic energy + Delta-G solvation = -27700.803803 eV Core-core repulsion = 23600.971167 eV Total energy + Delta-G solvation = -4099.832636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.62526 -39.51650 -38.72809 -37.74186 -35.47320 -35.18463 -33.00080 -31.62911 -31.00343 -30.18705 -28.89360 -27.18091 -26.58149 -24.87686 -24.64277 -23.61781 -22.27163 -22.06774 -20.66214 -20.03469 -19.35199 -18.43086 -17.31490 -17.09586 -16.84019 -16.42853 -16.17598 -15.91048 -15.73860 -15.44576 -14.90499 -14.83835 -14.53591 -14.37658 -13.98264 -13.58507 -13.51008 -13.00812 -12.75443 -12.47213 -12.34860 -12.22469 -12.09796 -11.87653 -11.64895 -11.62805 -11.52202 -11.02978 -10.87308 -10.85615 -10.73073 -10.47869 -10.36867 -10.08413 -9.93390 -9.85001 -9.71389 -9.70025 -9.41030 -9.07115 -8.59186 -6.75496 -5.59334 -3.00335 0.69304 1.38784 1.39931 2.99033 3.01556 3.11699 3.43548 3.49075 3.51612 3.80348 3.87473 4.06874 4.35323 4.41400 4.53375 4.54663 4.61565 4.65612 4.73483 4.86690 4.98279 5.02842 5.04306 5.16513 5.34733 5.40979 5.53843 5.64951 5.69604 5.82797 5.84562 5.94228 6.08451 6.23202 6.28220 6.29018 6.41952 6.46496 6.67561 6.70815 6.83802 7.05381 7.30727 7.59309 7.59607 7.70264 7.92509 8.05436 8.43302 9.28996 9.90218 10.55797 11.44684 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032441 B = 0.001512 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.905698 B =18516.713596 C =18861.453754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.125 3.875 5 N -0.362 5.362 6 C 0.099 3.901 7 C -0.098 4.098 8 C 0.601 3.399 9 O -0.538 6.538 10 N -0.711 5.711 11 C 0.118 3.882 12 C -0.117 4.117 13 C -0.097 4.097 14 H 0.072 0.928 15 C -0.139 4.139 16 C 0.151 3.849 17 N -0.605 5.605 18 C -0.219 4.219 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.139 3.861 27 N -0.200 5.200 28 N -0.064 5.064 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.208 0.792 37 H 0.408 0.592 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.010 0.990 46 H 0.250 0.750 47 H 0.023 0.977 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.389 -24.161 -0.551 34.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.149 5.149 6 C -0.057 4.057 7 C -0.237 4.237 8 C 0.385 3.615 9 O -0.415 6.415 10 N -0.362 5.362 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.117 4.117 14 H 0.091 0.909 15 C -0.177 4.177 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.013 3.987 27 N -0.075 5.075 28 N -0.044 5.044 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.224 0.776 37 H 0.243 0.757 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.028 0.972 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -24.460 -24.078 -1.113 34.340 hybrid contribution 0.960 -0.070 0.398 1.041 sum -23.500 -24.148 -0.715 33.703 Atomic orbital electron populations 1.22818 0.79520 1.03379 1.00586 1.87782 1.20904 1.26369 1.95637 1.22616 0.91825 0.85889 1.02478 1.21709 0.93267 0.77910 1.06754 1.50291 1.30459 1.13595 1.20524 1.23428 0.91781 0.94851 0.95653 1.21553 1.07295 0.95632 0.99237 1.16721 0.80380 0.81251 0.83157 1.90832 1.48913 1.76125 1.25594 1.45870 1.45642 1.12828 1.31823 1.21581 0.93327 0.89170 0.96411 1.21803 1.00215 0.93479 1.00033 1.22104 0.94948 0.95429 0.99216 0.90915 1.23041 1.00324 0.94778 0.99591 1.21915 0.84282 0.91387 0.99818 1.44524 1.04634 1.00352 1.83628 1.19149 0.82440 0.92896 1.40304 0.90496 1.24777 0.98250 0.95278 1.02534 1.69817 1.33544 0.96728 1.57120 0.86014 0.84784 0.77344 0.77484 1.20547 1.21800 1.21812 1.21387 0.89312 0.90644 0.97318 1.74656 1.03802 1.19003 1.09996 1.82009 1.20252 0.90511 1.11630 0.88940 0.93632 0.93491 0.92259 0.91196 0.87219 0.86599 0.77563 0.75703 0.90663 0.91181 0.91481 0.91013 0.92507 0.92174 0.87744 0.97163 0.93883 0.95924 0.96248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.22 16 2 O -0.39 -2.06 10.70 -35.23 -0.38 -2.44 16 3 C 0.05 0.23 6.14 37.15 0.23 0.45 16 4 C 0.13 0.48 6.91 -4.04 -0.03 0.46 16 5 N -0.36 -2.59 3.69 -61.06 -0.23 -2.82 16 6 C 0.10 0.77 11.27 -16.83 -0.19 0.58 16 7 C -0.10 -1.06 6.99 -83.55 -0.58 -1.64 16 8 C 0.60 7.72 7.82 -12.48 -0.10 7.62 16 9 O -0.54 -8.33 16.86 5.28 0.09 -8.24 16 10 N -0.71 -8.50 5.55 -61.35 -0.34 -8.84 16 11 C 0.12 1.54 5.56 -4.04 -0.02 1.51 16 12 C -0.12 -1.55 4.73 -26.73 -0.13 -1.68 16 13 C -0.10 -1.66 2.93 -88.75 -0.26 -1.92 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.14 -2.61 6.53 -24.58 -0.16 -2.77 16 16 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 17 N -0.61 -15.91 3.39 -170.04 -0.58 -16.48 16 18 C -0.22 -6.28 10.27 -15.06 -0.15 -6.43 16 19 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 20 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 21 N -0.92 -27.39 10.09 55.49 0.56 -26.83 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C 0.14 2.95 6.24 -3.04 -0.02 2.93 16 27 N -0.20 -2.29 12.04 32.85 0.40 -1.89 16 28 N -0.06 -0.65 13.65 60.35 0.82 0.17 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.05 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.05 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.12 0.18 8.08 -51.93 -0.42 -0.24 16 36 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.41 4.27 8.16 -40.82 -0.33 3.94 16 38 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.98 7.93 -51.93 -0.41 0.56 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.11 8.05 -51.93 -0.42 0.70 16 44 H 0.10 2.90 5.88 -51.93 -0.31 2.59 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 400.00 15.07 6.03 6.03 Total: -1.00 -35.11 400.00 -6.79 -41.90 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.73 Total: -1.60 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -0.41 Total: 3.57 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.64 Total: -56.69 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.29 Total: -10.68 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.11 -6.79 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713727311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.714 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds