Wall clock time and date at job start Tue Mar 31 2020 21:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00114 * 2 1 4 4 C 1.52993 * 109.47304 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47204 * 180.02562 * 4 3 2 6 6 C 1.34811 * 126.59551 * 125.27226 * 5 4 3 7 7 C 1.36603 * 106.83628 * 180.10741 * 6 5 4 8 8 C 1.47523 * 125.76763 * 179.90022 * 7 6 5 9 9 O 1.21595 * 120.00337 * 359.71046 * 8 7 6 10 10 N 1.34775 * 119.99857 * 179.71336 * 8 7 6 11 11 C 1.46497 * 120.00083 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47062 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46967 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.78170 * 308.24051 * 13 12 11 15 15 C 1.55158 * 110.72145 * 184.99928 * 13 12 11 16 16 C 1.54909 * 101.61642 * 206.15534 * 15 13 12 17 17 N 1.47423 * 104.83351 * 36.99324 * 16 15 13 18 18 C 1.36936 * 125.64594 * 155.90840 * 17 16 15 19 19 H 1.08007 * 120.00033 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00281 * 359.97114 * 18 17 16 21 21 N 1.31616 * 120.00050 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.47129 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47513 * 119.99988 * 22 20 18 25 25 H 1.48502 * 109.47290 * 240.00176 * 22 20 18 26 26 C 1.47016 * 108.70440 * 335.86643 * 17 16 15 27 27 N 1.34400 * 108.46083 * 359.63145 * 7 6 5 28 28 N 1.28770 * 109.52218 * 0.23038 * 27 7 6 29 29 H 1.08997 * 109.47274 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47109 * 299.99685 * 1 2 3 31 31 H 1.09001 * 109.47150 * 59.99891 * 1 2 3 32 32 H 1.08998 * 109.46864 * 59.99916 * 3 2 1 33 33 H 1.09002 * 109.47238 * 300.00517 * 3 2 1 34 34 H 1.08998 * 109.47490 * 59.99979 * 4 3 2 35 35 H 1.09001 * 109.46741 * 299.99897 * 4 3 2 36 36 H 1.07993 * 126.58453 * 359.96516 * 6 5 4 37 37 H 0.97002 * 120.00212 * 359.97438 * 10 8 7 38 38 H 1.09007 * 109.46821 * 60.00505 * 11 10 8 39 39 H 1.08996 * 109.47722 * 300.00172 * 11 10 8 40 40 H 1.08996 * 109.47404 * 60.00468 * 12 11 10 41 41 H 1.09005 * 109.47092 * 300.00001 * 12 11 10 42 42 H 1.09002 * 111.00366 * 88.06052 * 15 13 12 43 43 H 1.09002 * 111.00429 * 324.25114 * 15 13 12 44 44 H 1.09000 * 110.36449 * 155.82966 * 16 15 13 45 45 H 1.09002 * 110.36579 * 278.03887 * 16 15 13 46 46 H 0.96996 * 120.00056 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.88531 * 120.47268 * 26 17 16 48 48 H 1.08998 * 109.88872 * 241.64988 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0295 3.0025 0.8836 7 6 5.3068 4.2864 0.5087 8 6 6.2400 5.2019 1.1923 9 8 6.8370 4.8319 2.1849 10 7 6.4308 6.4484 0.7168 11 6 7.3570 7.3578 1.3960 12 6 7.3882 8.6982 0.6589 13 6 8.3561 9.6477 1.3679 14 1 8.1297 9.7066 2.4325 15 6 8.3167 11.0567 0.7195 16 6 9.7294 11.5950 1.0571 17 7 10.6170 10.4234 0.9433 18 6 11.9626 10.4630 0.6927 19 1 12.5272 9.5444 0.6282 20 6 12.6012 11.6835 0.5215 21 7 11.9134 12.8029 0.6005 22 14 14.4367 11.7373 0.1788 23 1 14.9738 10.3533 0.1398 24 1 14.6771 12.3991 -1.1286 25 1 15.1187 12.5023 1.2536 26 6 9.8183 9.2056 1.1445 27 7 4.5902 4.5727 -0.5917 28 7 3.8814 3.5496 -0.9218 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8567 0.6439 -0.8908 35 1 3.8573 0.6436 0.8891 36 1 5.4476 2.4738 1.7274 37 1 5.9548 6.7436 -0.0752 38 1 8.3562 6.9219 1.4005 39 1 7.0247 7.5154 2.4220 40 1 6.3891 9.1339 0.6547 41 1 7.7204 8.5409 -0.3673 42 1 7.5436 11.6752 1.1754 43 1 8.1726 10.9867 -0.3587 44 1 10.0231 12.3641 0.3427 45 1 9.7514 11.9926 2.0718 46 1 12.3596 13.6557 0.4805 47 1 9.8818 8.5704 0.2610 48 1 10.1802 8.6651 2.0191 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713727311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:29 Heat of formation + Delta-G solvation = 11.873471 kcal Electronic energy + Delta-G solvation = -27701.928756 eV Core-core repulsion = 23600.971167 eV Total energy + Delta-G solvation = -4100.957589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.30822 -40.51693 -39.35492 -39.06678 -36.48474 -35.96985 -34.72757 -32.65536 -32.13642 -31.07028 -30.47455 -28.20463 -27.40847 -26.60448 -25.12507 -24.72071 -23.26306 -22.84389 -21.93088 -21.54093 -20.70506 -19.16672 -18.86943 -17.83431 -17.54678 -17.14908 -17.02607 -16.86291 -16.60741 -16.54487 -16.17759 -15.76900 -15.57973 -15.52680 -14.99946 -14.82585 -14.48159 -14.24019 -13.78439 -13.51411 -13.49363 -13.32571 -13.23521 -13.07214 -12.81731 -12.79607 -12.68678 -12.43826 -12.22563 -12.17196 -11.96192 -11.76381 -11.60306 -11.44376 -11.40320 -11.28435 -11.11235 -10.80092 -10.73218 -10.48021 -10.04593 -8.85307 -7.76050 -5.19998 0.07215 0.56987 0.88727 1.46250 1.47251 1.57768 2.10328 2.21146 2.50542 2.65636 3.14463 3.33151 3.43903 3.72530 3.76405 3.77059 3.80681 3.92141 3.96342 4.08305 4.18252 4.20278 4.34414 4.39418 4.43141 4.47291 4.54263 4.59130 4.67307 4.72596 4.75976 4.79813 4.84435 4.92614 5.06514 5.13869 5.21214 5.28608 5.32106 5.40546 5.46484 5.54844 5.71695 5.85777 5.98304 6.34223 6.40828 6.84392 7.11928 7.13502 7.81745 8.45668 9.25909 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032441 B = 0.001512 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.905698 B =18516.713596 C =18861.453754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.120 3.880 5 N -0.350 5.350 6 C 0.119 3.881 7 C -0.123 4.123 8 C 0.602 3.398 9 O -0.570 6.570 10 N -0.706 5.706 11 C 0.125 3.875 12 C -0.102 4.102 13 C -0.083 4.083 14 H 0.082 0.918 15 C -0.123 4.123 16 C 0.149 3.851 17 N -0.629 5.629 18 C -0.239 4.239 19 H 0.077 0.923 20 C -0.068 4.068 21 N -0.949 5.949 22 Si 0.979 3.021 23 H -0.268 1.268 24 H -0.289 1.289 25 H -0.292 1.292 26 C 0.133 3.867 27 N -0.218 5.218 28 N -0.085 5.085 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.119 0.881 35 H 0.147 0.853 36 H 0.239 0.761 37 H 0.416 0.584 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.070 0.930 45 H -0.016 1.016 46 H 0.246 0.754 47 H 0.025 0.975 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.772 -26.178 -0.523 36.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.025 4.025 4 C 0.000 4.000 5 N -0.135 5.135 6 C -0.039 4.039 7 C -0.262 4.262 8 C 0.387 3.613 9 O -0.449 6.449 10 N -0.356 5.356 11 C 0.001 3.999 12 C -0.140 4.140 13 C -0.102 4.102 14 H 0.101 0.899 15 C -0.161 4.161 16 C 0.024 3.976 17 N -0.355 5.355 18 C -0.369 4.369 19 H 0.095 0.905 20 C -0.260 4.260 21 N -0.599 5.599 22 Si 0.807 3.193 23 H -0.193 1.193 24 H -0.216 1.216 25 H -0.219 1.219 26 C 0.008 3.992 27 N -0.092 5.092 28 N -0.065 5.065 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.165 0.835 36 H 0.256 0.744 37 H 0.253 0.747 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.002 0.998 46 H 0.056 0.944 47 H 0.043 0.957 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -25.893 -26.126 -1.117 36.800 hybrid contribution 1.341 0.460 0.409 1.476 sum -24.552 -25.667 -0.708 35.525 Atomic orbital electron populations 1.22977 0.78603 1.04336 1.01010 1.87754 1.21994 1.26623 1.95695 1.22558 0.92235 0.85675 1.02049 1.22042 0.92783 0.76363 1.08771 1.50463 1.29739 1.13958 1.19373 1.23888 0.90566 0.93828 0.95613 1.21430 1.08170 0.96640 0.99987 1.16948 0.80171 0.81431 0.82742 1.90809 1.50312 1.76742 1.27014 1.45776 1.45274 1.12630 1.31932 1.21394 0.92719 0.89122 0.96636 1.21641 1.00441 0.92671 0.99260 1.22015 0.93002 0.95006 1.00207 0.89940 1.22883 0.97030 0.95843 1.00369 1.21752 0.87721 0.90795 0.97328 1.44864 1.04596 1.02466 1.83582 1.19509 0.84088 0.93099 1.40163 0.90469 1.25623 1.02595 0.94999 1.02823 1.70073 1.34953 0.96950 1.57916 0.84994 0.79622 0.77689 0.76946 1.19271 1.21620 1.21881 1.21594 0.91457 0.89065 0.97051 1.74624 1.04283 1.19865 1.10456 1.81944 1.20653 0.91140 1.12760 0.87796 0.93050 0.93257 0.92154 0.92245 0.86286 0.83548 0.74438 0.74748 0.92498 0.91016 0.88656 0.91031 0.89602 0.91601 0.91193 0.99781 0.94377 0.95656 0.96700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 113.37 1.25 1.38 16 2 O -0.40 -3.59 10.70 -148.98 -1.59 -5.19 16 3 C 0.05 0.39 6.14 71.98 0.44 0.83 16 4 C 0.12 0.62 6.91 86.38 0.60 1.22 16 5 N -0.35 -4.25 3.69 -347.10 -1.28 -5.53 16 6 C 0.12 1.56 11.27 83.85 0.95 2.50 16 7 C -0.12 -2.49 6.99 40.82 0.29 -2.20 16 8 C 0.60 14.80 7.82 86.69 0.68 15.48 16 9 O -0.57 -17.12 16.86 -4.01 -0.07 -17.19 16 10 N -0.71 -15.87 5.55 -466.27 -2.59 -18.46 16 11 C 0.12 3.05 5.56 86.38 0.48 3.53 16 12 C -0.10 -2.45 4.73 30.60 0.14 -2.30 16 13 C -0.08 -2.68 2.93 -9.58 -0.03 -2.71 16 14 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 15 C -0.12 -4.44 6.53 31.99 0.21 -4.23 16 16 C 0.15 7.52 5.89 86.86 0.51 8.03 16 17 N -0.63 -33.62 3.39 -691.88 -2.35 -35.97 16 18 C -0.24 -13.96 10.27 84.03 0.86 -13.09 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 20 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 21 N -0.95 -57.91 10.09 21.65 0.22 -57.69 16 22 Si 0.98 46.92 29.55 68.60 2.03 48.94 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 C 0.13 5.62 6.24 86.75 0.54 6.17 16 27 N -0.22 -4.76 12.04 -49.99 -0.60 -5.36 16 28 N -0.08 -1.63 13.65 37.02 0.51 -1.12 16 29 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.15 -0.08 8.08 -2.39 -0.02 -0.10 16 36 H 0.24 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.42 8.02 8.16 -92.71 -0.76 7.27 16 38 H 0.06 1.62 7.69 -2.38 -0.02 1.60 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 1.77 7.93 -2.38 -0.02 1.75 16 42 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 44 H 0.07 4.02 5.88 -2.39 -0.01 4.01 16 45 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 46 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 47 H 0.03 1.06 7.68 -2.39 -0.02 1.04 16 48 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -78.24 400.00 1.86 -76.38 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.21 Total: 10.09 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 7.38 Total: 11.10 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -6.10 Total: -124.14 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -1.66 Total: -22.38 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -78.24 1.86 -76.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713727311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.258 kcal (2) G-P(sol) polarization free energy of solvation -78.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds