Wall clock time and date at job start Tue Mar 31 2020 21:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00486 * 2 1 4 4 C 1.53004 * 109.46866 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46843 * 180.02562 * 4 3 2 6 6 C 1.34810 * 126.59763 * 124.99684 * 5 4 3 7 7 C 1.36599 * 106.84117 * 180.02562 * 6 5 4 8 8 C 1.47519 * 125.76973 * 179.97438 * 7 6 5 9 9 O 1.21597 * 120.00409 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00080 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00440 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47442 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47138 * 180.02562 * 12 11 10 14 14 H 1.09000 * 110.88826 * 57.42335 * 13 12 11 15 15 C 1.55159 * 111.03830 * 181.32899 * 13 12 11 16 16 C 1.54318 * 102.94169 * 153.58739 * 15 13 12 17 17 N 1.47292 * 107.31103 * 337.81949 * 16 15 13 18 18 C 1.36935 * 125.79485 * 178.92456 * 17 16 15 19 19 H 1.08000 * 119.99782 * 174.82802 * 18 17 16 20 20 C 1.38813 * 119.99748 * 354.82496 * 18 17 16 21 21 N 1.31620 * 120.00341 * 7.02995 * 20 18 17 22 22 Si 1.86808 * 119.99539 * 187.02565 * 20 18 17 23 23 H 1.48502 * 109.46896 * 94.99260 * 22 20 18 24 24 H 1.48501 * 109.46951 * 214.98619 * 22 20 18 25 25 H 1.48492 * 109.47136 * 334.98799 * 22 20 18 26 26 C 1.47424 * 108.55382 * 358.92245 * 17 16 15 27 27 N 1.34401 * 108.45683 * 0.24499 * 7 6 5 28 28 N 1.28761 * 109.52238 * 359.58633 * 27 7 6 29 29 H 1.09000 * 109.46892 * 59.99969 * 1 2 3 30 30 H 1.08996 * 109.47704 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46968 * 300.00768 * 1 2 3 32 32 H 1.09001 * 109.46994 * 59.99731 * 3 2 1 33 33 H 1.09003 * 109.46743 * 299.99841 * 3 2 1 34 34 H 1.08998 * 109.47136 * 60.00010 * 4 3 2 35 35 H 1.09000 * 109.46720 * 299.99424 * 4 3 2 36 36 H 1.07994 * 126.57939 * 0.05433 * 6 5 4 37 37 H 0.97000 * 119.99803 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.47208 * 59.99749 * 11 10 8 39 39 H 1.09000 * 109.47180 * 300.00159 * 11 10 8 40 40 H 1.08992 * 109.46983 * 59.99798 * 12 11 10 41 41 H 1.09003 * 109.46760 * 299.99588 * 12 11 10 42 42 H 1.08999 * 110.71715 * 271.95309 * 15 13 12 43 43 H 1.08997 * 110.71630 * 35.04670 * 15 13 12 44 44 H 1.09004 * 109.88141 * 97.22592 * 16 15 13 45 45 H 1.09001 * 109.88609 * 218.23118 * 16 15 13 46 46 H 0.96997 * 119.99818 * 179.97438 * 21 20 18 47 47 H 1.08992 * 110.36982 * 265.26424 * 26 17 16 48 48 H 1.09001 * 110.36388 * 143.04866 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 7 4.1315 2.5227 0.0000 6 6 5.0259 3.0038 0.8866 7 6 5.3064 4.2864 0.5093 8 6 6.2383 5.2023 1.1940 9 8 6.8355 4.8322 2.1864 10 7 6.4278 6.4495 0.7196 11 6 7.3536 7.3590 1.3991 12 6 7.3833 8.7002 0.6633 13 6 8.3508 9.6497 1.3727 14 1 9.3494 9.2165 1.4289 15 6 8.3840 11.0350 0.6745 16 6 8.7960 11.9877 1.8164 17 7 8.4531 11.3243 3.0860 18 6 8.6766 11.8289 4.3392 19 1 8.3119 11.2999 5.2072 20 6 9.3721 13.0202 4.4938 21 7 9.6958 13.7352 3.4373 22 14 9.8483 13.6087 6.2016 23 1 11.2341 13.1714 6.5073 24 1 9.7745 15.0910 6.2528 25 1 8.9150 13.0318 7.2022 26 6 7.8279 10.0243 2.7820 27 7 4.5852 4.5747 -0.5876 28 7 3.8809 3.5497 -0.9211 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8567 0.6436 -0.8908 35 1 3.8574 0.6434 0.8892 36 1 5.4412 2.4763 1.7324 37 1 5.9511 6.7450 -0.0719 38 1 8.3531 6.9240 1.4029 39 1 7.0216 7.5154 2.4255 40 1 6.3839 9.1349 0.6600 41 1 7.7152 8.5441 -0.3631 42 1 9.1258 11.0466 -0.1240 43 1 7.3989 11.2955 0.2877 44 1 9.8691 12.1745 1.7744 45 1 8.2525 12.9285 1.7286 46 1 10.1815 14.5679 3.5454 47 1 6.7421 10.1188 2.7710 48 1 8.1354 9.2756 3.5121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713727314.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:35 Heat of formation + Delta-G solvation = 36.612916 kcal Electronic energy + Delta-G solvation = -27715.720490 eV Core-core repulsion = 23615.835684 eV Total energy + Delta-G solvation = -4099.884806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.62866 -39.51200 -38.72051 -37.72828 -35.47332 -35.17744 -32.97095 -31.63029 -31.00973 -30.18716 -28.91281 -27.17354 -26.56856 -24.87262 -24.64004 -23.62009 -22.27190 -22.10345 -20.65609 -19.93181 -19.46416 -18.44124 -17.31759 -17.08625 -16.81651 -16.41202 -16.17836 -15.90067 -15.72958 -15.35467 -14.96519 -14.75061 -14.55760 -14.32898 -13.98750 -13.63642 -13.57194 -13.00752 -12.75628 -12.41031 -12.34467 -12.22657 -12.09363 -11.90398 -11.78536 -11.63229 -11.49038 -11.01588 -10.87398 -10.82958 -10.72761 -10.47066 -10.34360 -10.08021 -9.91096 -9.81544 -9.71361 -9.69224 -9.57670 -9.06383 -8.51357 -6.74725 -5.66009 -2.97411 0.69075 1.38440 1.40281 2.99226 3.02018 3.11735 3.44730 3.49956 3.51800 3.80452 3.87425 4.07386 4.35595 4.41652 4.53578 4.56186 4.61921 4.66718 4.74174 4.87281 4.96618 5.03246 5.04266 5.17228 5.33347 5.40943 5.54243 5.67977 5.72749 5.81134 5.82775 5.93070 6.08718 6.18605 6.27668 6.28924 6.41067 6.45989 6.62569 6.66831 6.80522 7.04812 7.30737 7.59150 7.62975 7.71059 7.89367 8.05910 8.33002 9.28766 9.89874 10.57420 11.46479 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025713 B = 0.001547 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.674584 B =18098.607936 C =18565.663608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.362 5.362 6 C 0.099 3.901 7 C -0.098 4.098 8 C 0.601 3.399 9 O -0.537 6.537 10 N -0.712 5.712 11 C 0.118 3.882 12 C -0.117 4.117 13 C -0.100 4.100 14 H 0.076 0.924 15 C -0.138 4.138 16 C 0.175 3.825 17 N -0.607 5.607 18 C -0.227 4.227 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.139 3.861 27 N -0.201 5.201 28 N -0.064 5.064 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.208 0.792 37 H 0.407 0.593 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.039 0.961 46 H 0.251 0.749 47 H 0.017 0.983 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.609 -28.153 -10.886 33.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.149 5.149 6 C -0.057 4.057 7 C -0.237 4.237 8 C 0.385 3.615 9 O -0.414 6.414 10 N -0.362 5.362 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.120 4.120 14 H 0.095 0.905 15 C -0.176 4.176 16 C 0.051 3.949 17 N -0.333 5.333 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.013 3.987 27 N -0.075 5.075 28 N -0.044 5.044 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.224 0.776 37 H 0.242 0.758 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.034 0.966 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -15.768 -28.005 -11.304 34.069 hybrid contribution 0.274 0.319 1.353 1.417 sum -15.494 -27.686 -9.952 33.250 Atomic orbital electron populations 1.22820 0.79505 1.03374 1.00609 1.87778 1.20918 1.26370 1.95642 1.22625 0.91814 0.85896 1.02510 1.21709 0.93280 0.77902 1.06728 1.50289 1.30614 1.13580 1.20385 1.23433 0.91801 0.94916 0.95558 1.21554 1.07201 0.95624 0.99326 1.16722 0.80418 0.81278 0.83128 1.90839 1.48878 1.76184 1.25451 1.45871 1.45712 1.12751 1.31870 1.21571 0.93041 0.88828 0.97065 1.21749 1.00885 0.93668 0.99201 1.22267 0.98324 0.94679 0.96735 0.90550 1.22887 1.00334 0.95519 0.98882 1.21177 0.99300 0.92525 0.81914 1.44546 1.70729 1.15663 1.02392 1.19081 1.29162 1.04276 0.82990 0.90457 1.24811 1.00823 0.97540 0.97306 1.69984 1.44726 1.15118 1.27044 0.86137 0.78525 0.77715 0.83667 1.21660 1.21831 1.20662 1.21615 0.95132 0.88914 0.93041 1.74649 1.03767 1.18923 1.10147 1.82002 1.20330 0.90367 1.11732 0.93498 0.88940 0.93603 0.92220 0.91201 0.87235 0.86595 0.77557 0.75755 0.91094 0.90592 0.91183 0.91522 0.92353 0.92549 0.93571 0.94310 0.93858 0.96553 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.22 16 2 O -0.39 -2.09 10.70 -35.23 -0.38 -2.47 16 3 C 0.05 0.23 6.14 37.16 0.23 0.46 16 4 C 0.13 0.48 6.91 -4.04 -0.03 0.45 16 5 N -0.36 -2.56 3.69 -61.06 -0.23 -2.79 16 6 C 0.10 0.76 11.27 -16.84 -0.19 0.57 16 7 C -0.10 -1.05 6.99 -83.55 -0.58 -1.63 16 8 C 0.60 7.68 7.82 -12.48 -0.10 7.58 16 9 O -0.54 -8.34 16.86 5.28 0.09 -8.25 16 10 N -0.71 -8.39 5.55 -61.35 -0.34 -8.73 16 11 C 0.12 1.53 5.52 -4.04 -0.02 1.50 16 12 C -0.12 -1.50 4.85 -26.73 -0.13 -1.63 16 13 C -0.10 -1.70 3.07 -88.47 -0.27 -1.97 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.14 -2.55 6.42 -24.90 -0.16 -2.71 16 16 C 0.18 4.34 5.39 -2.92 -0.02 4.32 16 17 N -0.61 -15.90 3.40 -169.86 -0.58 -16.48 16 18 C -0.23 -6.50 10.27 -15.06 -0.15 -6.65 16 19 H 0.08 2.15 7.84 -52.49 -0.41 1.73 16 20 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 21 N -0.92 -27.63 10.38 55.49 0.58 -27.06 16 22 Si 0.91 22.57 29.56 -169.99 -5.02 17.54 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.14 2.90 5.89 -2.53 -0.01 2.89 16 27 N -0.20 -2.26 12.04 32.85 0.40 -1.86 16 28 N -0.06 -0.65 13.65 60.35 0.82 0.18 16 29 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.05 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.12 0.18 8.08 -51.93 -0.42 -0.24 16 36 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.41 4.15 8.16 -40.82 -0.33 3.82 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.10 7.45 -51.93 -0.39 0.71 16 40 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.97 8.04 -51.93 -0.42 0.56 16 44 H 0.05 1.26 7.31 -51.93 -0.38 0.88 16 45 H 0.04 1.06 7.62 -51.93 -0.40 0.66 16 46 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 48 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 LS Contribution 400.64 15.07 6.04 6.04 Total: -1.00 -35.45 400.64 -6.83 -42.28 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.78 Total: -2.46 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.42 Total: 4.05 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.65 Total: -56.74 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.29 Total: -10.72 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.45 -6.83 -42.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713727314.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.893 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds