Wall clock time and date at job start Tue Mar 31 2020 21:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00486 * 2 1 4 4 C 1.53004 * 109.46866 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46843 * 180.02562 * 4 3 2 6 6 C 1.34810 * 126.59763 * 124.99684 * 5 4 3 7 7 C 1.36599 * 106.84117 * 180.02562 * 6 5 4 8 8 C 1.47519 * 125.76973 * 179.97438 * 7 6 5 9 9 O 1.21597 * 120.00409 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00080 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00440 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47442 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47138 * 180.02562 * 12 11 10 14 14 H 1.09000 * 110.88826 * 57.42335 * 13 12 11 15 15 C 1.55159 * 111.03830 * 181.32899 * 13 12 11 16 16 C 1.54318 * 102.94169 * 153.58739 * 15 13 12 17 17 N 1.47292 * 107.31103 * 337.81949 * 16 15 13 18 18 C 1.36935 * 125.79485 * 178.92456 * 17 16 15 19 19 H 1.08000 * 119.99782 * 174.82802 * 18 17 16 20 20 C 1.38813 * 119.99748 * 354.82496 * 18 17 16 21 21 N 1.31620 * 120.00341 * 7.02995 * 20 18 17 22 22 Si 1.86808 * 119.99539 * 187.02565 * 20 18 17 23 23 H 1.48502 * 109.46896 * 94.99260 * 22 20 18 24 24 H 1.48501 * 109.46951 * 214.98619 * 22 20 18 25 25 H 1.48492 * 109.47136 * 334.98799 * 22 20 18 26 26 C 1.47424 * 108.55382 * 358.92245 * 17 16 15 27 27 N 1.34401 * 108.45683 * 0.24499 * 7 6 5 28 28 N 1.28761 * 109.52238 * 359.58633 * 27 7 6 29 29 H 1.09000 * 109.46892 * 59.99969 * 1 2 3 30 30 H 1.08996 * 109.47704 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46968 * 300.00768 * 1 2 3 32 32 H 1.09001 * 109.46994 * 59.99731 * 3 2 1 33 33 H 1.09003 * 109.46743 * 299.99841 * 3 2 1 34 34 H 1.08998 * 109.47136 * 60.00010 * 4 3 2 35 35 H 1.09000 * 109.46720 * 299.99424 * 4 3 2 36 36 H 1.07994 * 126.57939 * 0.05433 * 6 5 4 37 37 H 0.97000 * 119.99803 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.47208 * 59.99749 * 11 10 8 39 39 H 1.09000 * 109.47180 * 300.00159 * 11 10 8 40 40 H 1.08992 * 109.46983 * 59.99798 * 12 11 10 41 41 H 1.09003 * 109.46760 * 299.99588 * 12 11 10 42 42 H 1.08999 * 110.71715 * 271.95309 * 15 13 12 43 43 H 1.08997 * 110.71630 * 35.04670 * 15 13 12 44 44 H 1.09004 * 109.88141 * 97.22592 * 16 15 13 45 45 H 1.09001 * 109.88609 * 218.23118 * 16 15 13 46 46 H 0.96997 * 119.99818 * 179.97438 * 21 20 18 47 47 H 1.08992 * 110.36982 * 265.26424 * 26 17 16 48 48 H 1.09001 * 110.36388 * 143.04866 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 7 4.1315 2.5227 0.0000 6 6 5.0259 3.0038 0.8866 7 6 5.3064 4.2864 0.5093 8 6 6.2383 5.2023 1.1940 9 8 6.8355 4.8322 2.1864 10 7 6.4278 6.4495 0.7196 11 6 7.3536 7.3590 1.3991 12 6 7.3833 8.7002 0.6633 13 6 8.3508 9.6497 1.3727 14 1 9.3494 9.2165 1.4289 15 6 8.3840 11.0350 0.6745 16 6 8.7960 11.9877 1.8164 17 7 8.4531 11.3243 3.0860 18 6 8.6766 11.8289 4.3392 19 1 8.3119 11.2999 5.2072 20 6 9.3721 13.0202 4.4938 21 7 9.6958 13.7352 3.4373 22 14 9.8483 13.6087 6.2016 23 1 11.2341 13.1714 6.5073 24 1 9.7745 15.0910 6.2528 25 1 8.9150 13.0318 7.2022 26 6 7.8279 10.0243 2.7820 27 7 4.5852 4.5747 -0.5876 28 7 3.8809 3.5497 -0.9211 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8567 0.6436 -0.8908 35 1 3.8574 0.6434 0.8892 36 1 5.4412 2.4763 1.7324 37 1 5.9511 6.7450 -0.0719 38 1 8.3531 6.9240 1.4029 39 1 7.0216 7.5154 2.4255 40 1 6.3839 9.1349 0.6600 41 1 7.7152 8.5441 -0.3631 42 1 9.1258 11.0466 -0.1240 43 1 7.3989 11.2955 0.2877 44 1 9.8691 12.1745 1.7744 45 1 8.2525 12.9285 1.7286 46 1 10.1815 14.5679 3.5454 47 1 6.7421 10.1188 2.7710 48 1 8.1354 9.2756 3.5121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713727314.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:34 Heat of formation + Delta-G solvation = 10.178600 kcal Electronic energy + Delta-G solvation = -27716.866768 eV Core-core repulsion = 23615.835684 eV Total energy + Delta-G solvation = -4101.031084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.30421 -40.50734 -39.33693 -39.06598 -36.46961 -35.96482 -34.70867 -32.65946 -32.13350 -31.07124 -30.49118 -28.18621 -27.40708 -26.60308 -25.12204 -24.72845 -23.29737 -22.83921 -21.83195 -21.55351 -20.78161 -19.16454 -18.83203 -17.84393 -17.52421 -17.09175 -16.98694 -16.84730 -16.65264 -16.45322 -16.17028 -15.81820 -15.59806 -15.47937 -15.07165 -14.85423 -14.54564 -14.07636 -13.83922 -13.63960 -13.49833 -13.29984 -13.23831 -13.05220 -12.80966 -12.77911 -12.64871 -12.43479 -12.20910 -12.17817 -11.98735 -11.79364 -11.60793 -11.43896 -11.36003 -11.29965 -11.16219 -10.80259 -10.67402 -10.47402 -10.03396 -8.86267 -7.85109 -5.18655 0.07558 0.57679 0.89267 1.45207 1.47538 1.56351 2.11147 2.21805 2.50564 2.65476 3.15091 3.33014 3.44109 3.68432 3.73716 3.77690 3.83784 3.92788 4.02136 4.08545 4.18014 4.18367 4.35455 4.41200 4.43130 4.47283 4.54617 4.59247 4.65302 4.72295 4.76487 4.80906 4.84278 4.93969 5.03405 5.15480 5.19342 5.28751 5.32436 5.41436 5.46902 5.56430 5.71820 5.81178 5.98032 6.22356 6.41999 6.85128 7.12134 7.13328 7.80540 8.46139 9.26135 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025713 B = 0.001547 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.674584 B =18098.607936 C =18565.663608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.350 5.350 6 C 0.118 3.882 7 C -0.122 4.122 8 C 0.602 3.398 9 O -0.570 6.570 10 N -0.705 5.705 11 C 0.124 3.876 12 C -0.101 4.101 13 C -0.084 4.084 14 H 0.075 0.925 15 C -0.123 4.123 16 C 0.180 3.820 17 N -0.631 5.631 18 C -0.244 4.244 19 H 0.080 0.920 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.268 1.268 26 C 0.133 3.867 27 N -0.218 5.218 28 N -0.084 5.084 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.121 0.879 35 H 0.146 0.854 36 H 0.239 0.761 37 H 0.416 0.584 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.010 0.990 45 H 0.001 0.999 46 H 0.246 0.754 47 H 0.023 0.977 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.477 -30.567 -11.283 36.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.001 3.999 5 N -0.135 5.135 6 C -0.039 4.039 7 C -0.262 4.262 8 C 0.387 3.613 9 O -0.449 6.449 10 N -0.355 5.355 11 C 0.000 4.000 12 C -0.139 4.139 13 C -0.104 4.104 14 H 0.094 0.906 15 C -0.161 4.161 16 C 0.055 3.945 17 N -0.358 5.358 18 C -0.374 4.374 19 H 0.098 0.902 20 C -0.259 4.259 21 N -0.599 5.599 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.193 1.193 26 C 0.008 3.992 27 N -0.091 5.091 28 N -0.065 5.065 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.164 0.836 36 H 0.255 0.745 37 H 0.253 0.747 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.028 0.972 45 H 0.019 0.981 46 H 0.056 0.944 47 H 0.040 0.960 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.687 -30.457 -11.742 36.660 hybrid contribution 0.459 0.975 1.486 1.835 sum -16.228 -29.483 -10.256 35.182 Atomic orbital electron populations 1.22977 0.78629 1.04342 1.00984 1.87751 1.21966 1.26609 1.95691 1.22570 0.92338 0.85677 1.02006 1.22040 0.92677 0.76380 1.08810 1.50458 1.29888 1.13948 1.19248 1.23884 0.90620 0.93921 0.95525 1.21420 1.08066 0.96593 1.00098 1.16957 0.80201 0.81500 0.82687 1.90815 1.50339 1.76850 1.26925 1.45761 1.45375 1.12446 1.31951 1.21384 0.93086 0.89171 0.96329 1.21594 1.00132 0.92288 0.99894 1.22143 0.99282 0.94765 0.94210 0.90612 1.22754 1.01870 0.94415 0.97060 1.20991 0.96610 0.92911 0.84027 1.44899 1.70991 1.17728 1.02132 1.19478 1.28962 1.04483 0.84432 0.90246 1.25664 1.01228 0.97919 1.01129 1.70206 1.45453 1.15244 1.29023 0.85086 0.78187 0.76813 0.79440 1.21371 1.21999 1.19303 1.21827 0.95102 0.86660 0.95580 1.74617 1.04209 1.19748 1.10571 1.81937 1.20716 0.90982 1.12829 0.93232 0.87755 0.93154 0.92319 0.92201 0.86117 0.83603 0.74509 0.74687 0.91424 0.92353 0.90364 0.88715 0.89970 0.90717 0.97206 0.98073 0.94439 0.95963 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 113.37 1.25 1.39 16 2 O -0.40 -3.64 10.70 -148.98 -1.59 -5.24 16 3 C 0.05 0.39 6.14 71.98 0.44 0.84 16 4 C 0.12 0.61 6.91 86.38 0.60 1.20 16 5 N -0.35 -4.18 3.69 -347.10 -1.28 -5.46 16 6 C 0.12 1.54 11.27 83.85 0.95 2.48 16 7 C -0.12 -2.44 6.99 40.82 0.29 -2.16 16 8 C 0.60 14.69 7.82 86.69 0.68 15.36 16 9 O -0.57 -17.23 16.86 -4.02 -0.07 -17.30 16 10 N -0.70 -15.52 5.55 -466.28 -2.59 -18.11 16 11 C 0.12 3.00 5.52 86.38 0.48 3.48 16 12 C -0.10 -2.31 4.85 30.59 0.15 -2.16 16 13 C -0.08 -2.70 3.07 -9.40 -0.03 -2.73 16 14 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 15 C -0.12 -4.36 6.42 31.78 0.20 -4.15 16 16 C 0.18 9.11 5.39 86.68 0.47 9.58 16 17 N -0.63 -33.67 3.40 -691.31 -2.35 -36.03 16 18 C -0.24 -14.29 10.27 84.03 0.86 -13.43 16 19 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 20 C -0.07 -3.92 5.48 84.86 0.46 -3.45 16 21 N -0.95 -58.95 10.38 21.65 0.22 -58.72 16 22 Si 0.98 47.18 29.56 68.60 2.03 49.20 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 C 0.13 5.51 5.89 86.86 0.51 6.02 16 27 N -0.22 -4.64 12.04 -50.00 -0.60 -5.24 16 28 N -0.08 -1.59 13.65 37.02 0.51 -1.09 16 29 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.10 0.27 8.14 -2.39 -0.02 0.26 16 31 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.12 0.41 8.14 -2.39 -0.02 0.40 16 35 H 0.15 -0.09 8.08 -2.39 -0.02 -0.11 16 36 H 0.24 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.42 7.68 8.16 -92.71 -0.76 6.93 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.64 7.45 -2.39 -0.02 1.62 16 40 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 44 H 0.01 0.55 7.31 -2.38 -0.02 0.53 16 45 H 0.00 0.06 7.62 -2.39 -0.02 0.04 16 46 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 47 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 48 H 0.04 1.50 8.06 -2.39 -0.02 1.48 16 Total: -1.00 -79.61 400.64 1.78 -77.84 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.20 Total: 7.87 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 7.30 Total: 12.26 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -6.10 Total: -124.64 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -1.66 Total: -22.53 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.20 kcal Total: -79.61 1.78 -77.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713727314.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.015 kcal (2) G-P(sol) polarization free energy of solvation -79.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds