Wall clock time and date at job start Tue Mar 31 2020 21:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99956 * 2 1 4 4 H 1.07998 * 120.00271 * 202.10031 * 3 2 1 5 5 C 1.38808 * 119.99857 * 22.11508 * 3 2 1 6 6 N 1.31623 * 120.00374 * 14.13441 * 5 3 2 7 7 Si 1.86803 * 120.00019 * 194.14431 * 5 3 2 8 8 H 1.48498 * 109.47307 * 59.99345 * 7 5 3 9 9 H 1.48502 * 109.47039 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46729 * 299.99610 * 7 5 3 11 11 C 1.46497 * 119.99995 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47665 * 89.99697 * 11 2 1 13 13 C 1.53042 * 109.46207 * 184.99888 * 12 11 2 14 14 C 1.53190 * 109.31331 * 178.62541 * 13 12 11 15 15 N 1.46930 * 108.77424 * 54.63824 * 14 13 12 16 16 C 1.34772 * 120.63264 * 126.36487 * 15 14 13 17 17 O 1.21281 * 119.99838 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00147 * 179.97438 * 16 15 14 19 19 N 1.46502 * 109.47091 * 180.02562 * 18 16 15 20 20 N 1.40172 * 126.34923 * 270.02312 * 19 18 16 21 21 C 1.29393 * 108.14168 * 179.97438 * 20 19 18 22 22 N 1.37365 * 108.82875 * 0.02562 * 21 20 19 23 23 C 1.46497 * 125.83219 * 180.02562 * 22 21 20 24 24 C 1.34813 * 108.33291 * 0.02562 * 22 21 20 25 25 O 1.21820 * 126.30022 * 179.97438 * 24 22 21 26 26 C 1.46931 * 118.73668 * 306.64322 * 15 14 13 27 27 C 1.52762 * 109.00975 * 53.30562 * 26 15 14 28 28 H 1.08994 * 109.46956 * 275.12686 * 1 2 3 29 29 H 1.09002 * 109.47214 * 35.13058 * 1 2 3 30 30 H 1.09002 * 109.47223 * 155.12763 * 1 2 3 31 31 H 0.96991 * 120.00224 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.47168 * 329.99428 * 11 2 1 33 33 H 1.09001 * 109.47099 * 209.99848 * 11 2 1 34 34 H 1.09002 * 109.45793 * 304.97294 * 12 11 2 35 35 H 1.09003 * 109.49335 * 58.67522 * 13 12 11 36 36 H 1.08999 * 109.52323 * 298.59837 * 13 12 11 37 37 H 1.09001 * 109.58993 * 294.85345 * 14 13 12 38 38 H 1.09002 * 109.70336 * 174.48944 * 14 13 12 39 39 H 1.08998 * 109.46887 * 60.00496 * 18 16 15 40 40 H 1.08997 * 109.47376 * 300.00289 * 18 16 15 41 41 H 1.07998 * 125.58676 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47117 * 359.97438 * 23 22 21 43 43 H 1.09004 * 109.46953 * 119.97444 * 23 22 21 44 44 H 1.08991 * 109.47557 * 239.97658 * 23 22 21 45 45 H 1.09001 * 109.58723 * 173.14393 * 26 15 14 46 46 H 1.09004 * 109.58439 * 293.56804 * 26 15 14 47 47 H 1.09004 * 109.56442 * 185.54838 * 27 26 15 48 48 H 1.09006 * 109.38180 * 65.51730 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1701 1.2203 -0.3519 5 6 1.5322 2.3438 0.4526 6 7 0.4081 2.2674 1.1331 7 14 2.2963 4.0106 0.0956 8 1 2.3934 4.2063 -1.3732 9 1 1.4486 5.0796 0.6820 10 1 3.6542 4.0708 0.6938 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7099 -1.4432 13 6 3.1062 -3.0937 -1.4453 14 6 3.3286 -3.5468 -2.8916 15 7 4.0996 -2.5142 -3.5974 16 6 5.2373 -2.8305 -4.2470 17 8 5.6334 -3.9768 -4.2530 18 6 6.0165 -1.7601 -4.9668 19 7 7.2027 -2.3542 -5.5883 20 7 8.4680 -2.4911 -5.0009 21 6 9.2509 -3.0616 -5.8588 22 7 8.5420 -3.3107 -7.0087 23 6 9.0675 -3.9466 -8.2193 24 6 7.2801 -2.8701 -6.8327 25 8 6.3759 -2.9280 -7.6470 26 6 3.6099 -1.1290 -3.5764 27 6 3.3812 -0.7040 -2.1270 28 1 -0.3633 0.0918 1.0235 29 1 -0.3634 0.8405 -0.5914 30 1 -0.3634 -0.9324 -0.4322 31 1 -0.0231 3.0764 1.4496 32 1 1.6084 -2.0286 0.5130 33 1 3.1499 -1.1386 0.5133 34 1 1.5059 -1.7546 -1.9819 35 1 2.4544 -3.8046 -0.9374 36 1 4.0643 -3.0446 -0.9279 37 1 2.3657 -3.6841 -3.3837 38 1 3.8814 -4.4862 -2.9015 39 1 6.3240 -0.9939 -4.2551 40 1 5.3900 -1.3103 -5.7369 41 1 10.2914 -3.3017 -5.6975 42 1 10.1182 -4.1960 -8.0719 43 1 8.5036 -4.8563 -8.4260 44 1 8.9716 -3.2606 -9.0609 45 1 4.3493 -0.4731 -4.0359 46 1 2.6704 -1.0653 -4.1255 47 1 2.9254 0.2859 -2.1045 48 1 4.3367 -0.6766 -1.6031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713764813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:44 Heat of formation + Delta-G solvation = 44.368916 kcal Electronic energy + Delta-G solvation = -29885.026679 eV Core-core repulsion = 25785.478198 eV Total energy + Delta-G solvation = -4099.548481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.63314 -40.13977 -37.75845 -37.42174 -35.58500 -35.37237 -33.14256 -32.15993 -31.00260 -30.60420 -28.69495 -27.43276 -26.55035 -25.84701 -23.70043 -23.17725 -22.71733 -21.65607 -20.95924 -19.95211 -18.98194 -17.89576 -17.52902 -16.70605 -16.58203 -16.33190 -16.03960 -15.61524 -15.21391 -14.98459 -14.67370 -14.18333 -14.04968 -13.80718 -13.58985 -13.48543 -13.37409 -13.18227 -12.90881 -12.77127 -12.68636 -12.30603 -12.11868 -11.97009 -11.90029 -11.22357 -11.04365 -10.86574 -10.81480 -10.70514 -10.47302 -10.46444 -10.41516 -10.27851 -10.03152 -9.85512 -9.69117 -9.58419 -8.76311 -8.60825 -8.49750 -6.71169 -5.70951 -3.16229 1.42581 1.73181 2.45510 2.52429 2.79199 3.10295 3.37632 3.43331 3.44212 4.10608 4.34325 4.43581 4.49768 4.62463 4.84945 4.87960 4.97231 5.08823 5.10911 5.12864 5.23641 5.31308 5.42740 5.48019 5.53506 5.59241 5.69831 5.81087 5.83576 5.93010 6.12385 6.14590 6.23131 6.29280 6.44611 6.50690 6.57907 6.66202 6.78981 6.95369 7.01833 7.36647 7.36956 7.39293 7.73931 7.81134 7.81777 8.09073 8.41156 9.25297 9.90229 10.39728 11.33827 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.002531 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.242147 B =11060.367150 C =12031.449863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.602 5.602 3 C -0.252 4.252 4 H 0.071 0.929 5 C 0.000 4.000 6 N -0.907 5.907 7 Si 0.900 3.100 8 H -0.284 1.284 9 H -0.292 1.292 10 H -0.284 1.284 11 C 0.157 3.843 12 C -0.105 4.105 13 C -0.127 4.127 14 C 0.115 3.885 15 N -0.603 5.603 16 C 0.500 3.500 17 O -0.537 6.537 18 C 0.143 3.857 19 N -0.436 5.436 20 N -0.271 5.271 21 C 0.253 3.747 22 N -0.562 5.562 23 C 0.102 3.898 24 C 0.652 3.348 25 O -0.553 6.553 26 C 0.102 3.898 27 C -0.125 4.125 28 H 0.028 0.972 29 H 0.039 0.961 30 H -0.004 1.004 31 H 0.252 0.748 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.231 0.769 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.104 0.896 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.211 -11.187 -15.305 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.382 4.382 4 H 0.089 0.911 5 C -0.199 4.199 6 N -0.552 5.552 7 Si 0.730 3.270 8 H -0.211 1.211 9 H -0.218 1.218 10 H -0.210 1.210 11 C 0.029 3.971 12 C -0.127 4.127 13 C -0.166 4.166 14 C -0.007 4.007 15 N -0.337 5.337 16 C 0.286 3.714 17 O -0.414 6.414 18 C 0.018 3.982 19 N -0.256 5.256 20 N -0.092 5.092 21 C -0.046 4.046 22 N -0.292 5.292 23 C -0.040 4.040 24 C 0.351 3.649 25 O -0.426 6.426 26 C -0.020 4.020 27 C -0.163 4.163 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.015 0.985 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.248 0.752 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.122 0.878 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.489 -11.259 -14.851 24.233 hybrid contribution 0.397 0.690 -0.740 1.087 sum 15.886 -10.569 -15.591 24.640 Atomic orbital electron populations 1.20757 0.82820 0.95236 0.99311 1.43887 1.01705 1.00689 1.86183 1.19153 0.97710 0.85333 1.35980 0.91126 1.25017 0.97990 0.98421 0.98425 1.70066 1.19581 1.27062 1.38526 0.86407 0.78420 0.84164 0.77987 1.21094 1.21757 1.20996 1.20748 0.95925 0.88344 0.92066 1.21814 0.97726 0.92414 1.00724 1.21946 1.01363 0.98229 0.95066 1.21616 0.95346 0.91230 0.92506 1.48156 1.23597 1.10244 1.51689 1.20775 0.81102 0.89996 0.79516 1.90690 1.68329 1.21015 1.61405 1.21315 0.83181 0.94437 0.99263 1.48240 1.08247 1.56952 1.12149 1.77003 0.90016 1.21004 1.21133 1.25940 0.99795 0.96578 0.82337 1.45864 1.11189 1.56158 1.15958 1.21790 0.99882 0.98326 0.83968 1.16635 0.83254 0.81242 0.83728 1.91085 1.40408 1.63246 1.47882 1.21924 0.99827 0.80514 0.99771 1.21951 1.00116 1.01836 0.92421 0.95325 0.94202 0.98518 0.93783 0.94747 0.93692 0.91758 0.91077 0.91831 0.91632 0.89626 0.85485 0.85772 0.75248 0.88842 0.90513 0.90480 0.90510 0.90936 0.87774 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 8.98 59.85 0.54 4.45 16 2 N -0.60 -14.32 2.80 -181.12 -0.51 -14.83 16 3 C -0.25 -6.50 8.15 -15.06 -0.12 -6.62 16 4 H 0.07 1.74 6.72 -52.49 -0.35 1.39 16 5 C 0.00 -0.01 5.08 -17.43 -0.09 -0.10 16 6 N -0.91 -26.01 10.72 55.49 0.59 -25.42 16 7 Si 0.90 21.16 29.58 -169.99 -5.03 16.14 16 8 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.16 3.04 5.15 -4.04 -0.02 3.02 16 12 C -0.11 -1.67 2.36 -90.58 -0.21 -1.89 16 13 C -0.13 -1.73 5.36 -26.61 -0.14 -1.88 16 14 C 0.12 1.55 6.44 -3.71 -0.02 1.53 16 15 N -0.60 -8.22 2.98 -173.02 -0.52 -8.73 16 16 C 0.50 7.44 7.77 -10.99 -0.09 7.36 16 17 O -0.54 -9.93 15.84 5.56 0.09 -9.84 16 18 C 0.14 1.74 5.22 -5.19 -0.03 1.71 16 19 N -0.44 -5.85 3.11 -66.31 -0.21 -6.06 16 20 N -0.27 -3.14 12.53 29.87 0.37 -2.77 16 21 C 0.25 1.91 12.61 -89.12 -1.12 0.78 16 22 N -0.56 -5.25 3.14 -130.11 -0.41 -5.66 16 23 C 0.10 0.50 11.08 59.85 0.66 1.17 16 24 C 0.65 9.16 8.60 -86.74 -0.75 8.41 16 25 O -0.55 -9.52 17.76 5.08 0.09 -9.43 16 26 C 0.10 1.26 6.31 -3.93 -0.02 1.24 16 27 C -0.13 -1.91 4.60 -26.84 -0.12 -2.04 16 28 H 0.03 0.75 7.36 -51.93 -0.38 0.37 16 29 H 0.04 1.02 7.31 -51.93 -0.38 0.64 16 30 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 33 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 39 H 0.13 1.25 7.68 -51.93 -0.40 0.85 16 40 H 0.12 1.32 7.92 -51.93 -0.41 0.91 16 41 H 0.23 0.37 8.06 -52.49 -0.42 -0.06 16 42 H 0.09 0.09 8.07 -51.93 -0.42 -0.33 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.77 5.94 -51.93 -0.31 0.46 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.10 1.87 5.95 -51.93 -0.31 1.56 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 387.08 15.07 5.83 5.83 Total: -1.00 -37.33 387.08 -8.75 -46.08 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.52 Total: -2.46 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: -1.54 Total: 17.15 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.67 Total: -63.47 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.18 Total: -19.28 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.33 -8.75 -46.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713764813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.446 kcal (2) G-P(sol) polarization free energy of solvation -37.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds