Wall clock time and date at job start Tue Mar 31 2020 21:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99956 * 2 1 4 4 H 1.07998 * 120.00271 * 202.10031 * 3 2 1 5 5 C 1.38808 * 119.99857 * 22.11508 * 3 2 1 6 6 N 1.31623 * 120.00374 * 14.13441 * 5 3 2 7 7 Si 1.86803 * 120.00019 * 194.14431 * 5 3 2 8 8 H 1.48498 * 109.47307 * 59.99345 * 7 5 3 9 9 H 1.48502 * 109.47039 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46729 * 299.99610 * 7 5 3 11 11 C 1.46497 * 119.99995 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47665 * 89.99697 * 11 2 1 13 13 C 1.53042 * 109.46207 * 184.99888 * 12 11 2 14 14 C 1.53190 * 109.31331 * 178.62541 * 13 12 11 15 15 N 1.46930 * 108.77424 * 54.63824 * 14 13 12 16 16 C 1.34772 * 120.63264 * 126.36487 * 15 14 13 17 17 O 1.21281 * 119.99838 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00147 * 179.97438 * 16 15 14 19 19 N 1.46502 * 109.47091 * 180.02562 * 18 16 15 20 20 N 1.40172 * 126.34923 * 270.02312 * 19 18 16 21 21 C 1.29393 * 108.14168 * 179.97438 * 20 19 18 22 22 N 1.37365 * 108.82875 * 0.02562 * 21 20 19 23 23 C 1.46497 * 125.83219 * 180.02562 * 22 21 20 24 24 C 1.34813 * 108.33291 * 0.02562 * 22 21 20 25 25 O 1.21820 * 126.30022 * 179.97438 * 24 22 21 26 26 C 1.46931 * 118.73668 * 306.64322 * 15 14 13 27 27 C 1.52762 * 109.00975 * 53.30562 * 26 15 14 28 28 H 1.08994 * 109.46956 * 275.12686 * 1 2 3 29 29 H 1.09002 * 109.47214 * 35.13058 * 1 2 3 30 30 H 1.09002 * 109.47223 * 155.12763 * 1 2 3 31 31 H 0.96991 * 120.00224 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.47168 * 329.99428 * 11 2 1 33 33 H 1.09001 * 109.47099 * 209.99848 * 11 2 1 34 34 H 1.09002 * 109.45793 * 304.97294 * 12 11 2 35 35 H 1.09003 * 109.49335 * 58.67522 * 13 12 11 36 36 H 1.08999 * 109.52323 * 298.59837 * 13 12 11 37 37 H 1.09001 * 109.58993 * 294.85345 * 14 13 12 38 38 H 1.09002 * 109.70336 * 174.48944 * 14 13 12 39 39 H 1.08998 * 109.46887 * 60.00496 * 18 16 15 40 40 H 1.08997 * 109.47376 * 300.00289 * 18 16 15 41 41 H 1.07998 * 125.58676 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47117 * 359.97438 * 23 22 21 43 43 H 1.09004 * 109.46953 * 119.97444 * 23 22 21 44 44 H 1.08991 * 109.47557 * 239.97658 * 23 22 21 45 45 H 1.09001 * 109.58723 * 173.14393 * 26 15 14 46 46 H 1.09004 * 109.58439 * 293.56804 * 26 15 14 47 47 H 1.09004 * 109.56442 * 185.54838 * 27 26 15 48 48 H 1.09006 * 109.38180 * 65.51730 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1701 1.2203 -0.3519 5 6 1.5322 2.3438 0.4526 6 7 0.4081 2.2674 1.1331 7 14 2.2963 4.0106 0.0956 8 1 2.3934 4.2063 -1.3732 9 1 1.4486 5.0796 0.6820 10 1 3.6542 4.0708 0.6938 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7099 -1.4432 13 6 3.1062 -3.0937 -1.4453 14 6 3.3286 -3.5468 -2.8916 15 7 4.0996 -2.5142 -3.5974 16 6 5.2373 -2.8305 -4.2470 17 8 5.6334 -3.9768 -4.2530 18 6 6.0165 -1.7601 -4.9668 19 7 7.2027 -2.3542 -5.5883 20 7 8.4680 -2.4911 -5.0009 21 6 9.2509 -3.0616 -5.8588 22 7 8.5420 -3.3107 -7.0087 23 6 9.0675 -3.9466 -8.2193 24 6 7.2801 -2.8701 -6.8327 25 8 6.3759 -2.9280 -7.6470 26 6 3.6099 -1.1290 -3.5764 27 6 3.3812 -0.7040 -2.1270 28 1 -0.3633 0.0918 1.0235 29 1 -0.3634 0.8405 -0.5914 30 1 -0.3634 -0.9324 -0.4322 31 1 -0.0231 3.0764 1.4496 32 1 1.6084 -2.0286 0.5130 33 1 3.1499 -1.1386 0.5133 34 1 1.5059 -1.7546 -1.9819 35 1 2.4544 -3.8046 -0.9374 36 1 4.0643 -3.0446 -0.9279 37 1 2.3657 -3.6841 -3.3837 38 1 3.8814 -4.4862 -2.9015 39 1 6.3240 -0.9939 -4.2551 40 1 5.3900 -1.3103 -5.7369 41 1 10.2914 -3.3017 -5.6975 42 1 10.1182 -4.1960 -8.0719 43 1 8.5036 -4.8563 -8.4260 44 1 8.9716 -3.2606 -9.0609 45 1 4.3493 -0.4731 -4.0359 46 1 2.6704 -1.0653 -4.1255 47 1 2.9254 0.2859 -2.1045 48 1 4.3367 -0.6766 -1.6031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713764813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:43 Heat of formation + Delta-G solvation = 20.584134 kcal Electronic energy + Delta-G solvation = -29886.058064 eV Core-core repulsion = 25785.478198 eV Total energy + Delta-G solvation = -4100.579866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.43886 -41.27855 -39.07483 -38.43920 -37.14004 -36.25546 -34.57909 -33.17251 -32.45843 -31.95433 -29.63334 -28.46881 -27.88173 -27.50924 -25.06180 -24.25407 -23.68661 -22.74280 -22.27001 -21.28989 -20.12373 -18.80059 -18.59995 -18.47385 -17.54828 -17.15517 -17.02912 -16.86864 -16.52328 -16.25324 -15.70482 -15.41874 -15.36214 -15.12127 -14.94532 -14.79979 -14.40022 -14.27596 -14.02454 -13.73528 -13.57433 -13.49380 -13.32099 -13.16181 -12.96201 -12.93095 -12.67357 -12.57311 -12.19072 -12.15236 -12.00804 -11.94973 -11.81745 -11.59458 -11.42439 -11.23039 -11.14012 -10.73072 -10.53738 -9.73593 -9.67723 -8.67448 -7.74237 -5.20850 0.63614 1.07723 1.40939 1.51254 1.52279 1.52810 1.58648 1.94377 2.27206 2.57172 3.31950 3.38580 3.41893 3.70171 3.85605 4.00630 4.03831 4.08245 4.08683 4.15600 4.20444 4.38916 4.39628 4.47931 4.48794 4.59140 4.76575 4.78224 4.82270 4.86543 4.87380 4.90896 4.96765 5.07794 5.10887 5.13391 5.20512 5.35924 5.42567 5.64877 5.65547 5.67926 5.73411 5.78541 6.26902 6.40646 6.58997 6.87998 6.98631 7.23352 7.96797 8.41512 9.29233 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.002531 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.242147 B =11060.367150 C =12031.449863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.616 5.616 3 C -0.244 4.244 4 H 0.081 0.919 5 C -0.061 4.061 6 N -0.944 5.944 7 Si 0.961 3.039 8 H -0.274 1.274 9 H -0.303 1.303 10 H -0.277 1.277 11 C 0.155 3.845 12 C -0.094 4.094 13 C -0.115 4.115 14 C 0.116 3.884 15 N -0.601 5.601 16 C 0.498 3.502 17 O -0.579 6.579 18 C 0.141 3.859 19 N -0.446 5.446 20 N -0.314 5.314 21 C 0.279 3.721 22 N -0.559 5.559 23 C 0.094 3.906 24 C 0.631 3.369 25 O -0.600 6.600 26 C 0.107 3.893 27 C -0.120 4.120 28 H -0.001 1.001 29 H 0.015 0.985 30 H 0.028 0.972 31 H 0.244 0.756 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.136 0.864 41 H 0.291 0.709 42 H 0.144 0.856 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.907 -11.796 -16.651 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.339 5.339 3 C -0.374 4.374 4 H 0.099 0.901 5 C -0.256 4.256 6 N -0.592 5.592 7 Si 0.790 3.210 8 H -0.200 1.200 9 H -0.230 1.230 10 H -0.203 1.203 11 C 0.029 3.971 12 C -0.115 4.115 13 C -0.153 4.153 14 C -0.006 4.006 15 N -0.333 5.333 16 C 0.285 3.715 17 O -0.459 6.459 18 C 0.016 3.984 19 N -0.265 5.265 20 N -0.135 5.135 21 C -0.019 4.019 22 N -0.286 5.286 23 C -0.046 4.046 24 C 0.330 3.670 25 O -0.477 6.477 26 C -0.014 4.014 27 C -0.158 4.158 28 H 0.017 0.983 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.306 0.694 42 H 0.162 0.838 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.123 0.877 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.245 -11.893 -16.210 27.149 hybrid contribution -0.348 0.754 -0.322 0.890 sum 17.896 -11.139 -16.532 26.790 Atomic orbital electron populations 1.20488 0.83208 0.95728 0.97295 1.44131 1.01813 1.01778 1.86185 1.19524 0.97948 0.86018 1.33896 0.90141 1.25767 0.98843 1.01745 0.99211 1.70244 1.21274 1.27141 1.40537 0.85424 0.77478 0.79987 0.78103 1.19998 1.22977 1.20286 1.20910 0.95081 0.86727 0.94389 1.21592 0.98089 0.93823 0.97982 1.21820 1.01088 0.97015 0.95418 1.21605 0.95726 0.90937 0.92364 1.48225 1.23281 1.10655 1.51185 1.21273 0.81063 0.90016 0.79142 1.90660 1.69381 1.22832 1.63021 1.21451 0.83281 0.93861 0.99842 1.48390 1.09150 1.56851 1.12110 1.77012 0.89711 1.24066 1.22697 1.27178 1.01195 0.93115 0.80378 1.46139 1.09806 1.55118 1.17543 1.22170 1.02368 0.97537 0.82565 1.17054 0.84433 0.81737 0.83752 1.91024 1.42253 1.65203 1.49228 1.21940 1.01251 0.80242 0.97994 1.21807 0.99359 1.00306 0.94313 0.98288 0.96656 0.95325 0.94693 0.93972 0.94442 0.92029 0.89588 0.92398 0.90460 0.90536 0.83253 0.84589 0.69378 0.83828 0.91481 0.90440 0.87718 0.90072 0.90266 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.59 8.98 127.77 1.15 9.74 16 2 N -0.62 -29.18 2.80 -726.95 -2.03 -31.22 16 3 C -0.24 -12.51 8.15 84.03 0.69 -11.82 16 4 H 0.08 3.90 6.72 -2.91 -0.02 3.88 16 5 C -0.06 -3.35 5.08 84.86 0.43 -2.92 16 6 N -0.94 -55.47 10.72 21.65 0.23 -55.24 16 7 Si 0.96 43.77 29.58 68.60 2.03 45.80 16 8 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 9 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 C 0.15 5.85 5.15 86.38 0.44 6.30 16 12 C -0.09 -2.83 2.36 -10.77 -0.03 -2.86 16 13 C -0.11 -2.92 5.36 30.67 0.16 -2.76 16 14 C 0.12 2.95 6.44 86.36 0.56 3.51 16 15 N -0.60 -15.47 2.98 -819.71 -2.44 -17.91 16 16 C 0.50 14.38 7.77 87.66 0.68 15.06 16 17 O -0.58 -21.34 15.84 -3.03 -0.05 -21.39 16 18 C 0.14 3.25 5.22 85.63 0.45 3.70 16 19 N -0.45 -11.56 3.11 -481.79 -1.50 -13.06 16 20 N -0.31 -6.66 12.53 -59.42 -0.74 -7.40 16 21 C 0.28 3.28 12.61 179.82 2.27 5.55 16 22 N -0.56 -9.25 3.14 -683.70 -2.15 -11.40 16 23 C 0.09 0.68 11.08 127.77 1.42 2.10 16 24 C 0.63 17.42 8.60 178.99 1.54 18.97 16 25 O -0.60 -21.02 17.76 -4.73 -0.08 -21.11 16 26 C 0.11 2.44 6.31 86.22 0.54 2.98 16 27 C -0.12 -3.47 4.60 30.53 0.14 -3.33 16 28 H 0.00 -0.06 7.36 -2.39 -0.02 -0.08 16 29 H 0.01 0.78 7.31 -2.39 -0.02 0.76 16 30 H 0.03 1.16 8.03 -2.39 -0.02 1.14 16 31 H 0.24 14.11 8.31 -92.72 -0.77 13.34 16 32 H 0.04 1.52 8.07 -2.39 -0.02 1.50 16 33 H 0.04 1.46 8.04 -2.39 -0.02 1.44 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 2.14 7.00 -2.39 -0.02 2.12 16 39 H 0.15 2.66 7.68 -2.39 -0.02 2.64 16 40 H 0.14 2.73 7.92 -2.39 -0.02 2.71 16 41 H 0.29 -0.72 8.06 -2.91 -0.02 -0.75 16 42 H 0.14 -0.43 8.07 -2.39 -0.02 -0.45 16 43 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.10 1.81 5.94 -2.39 -0.01 1.80 16 46 H 0.08 1.76 8.14 -2.38 -0.02 1.75 16 47 H 0.08 2.75 5.95 -2.39 -0.01 2.74 16 48 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -85.03 387.08 4.66 -80.37 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.96 Total: 8.34 kcal Atomic # 6 Polarization: 33.77 SS G_CDS: 10.44 Total: 44.21 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -8.64 Total: -136.22 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.13 Total: -42.49 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -85.03 4.66 -80.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713764813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.956 kcal (2) G-P(sol) polarization free energy of solvation -85.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds