Wall clock time and date at job start Tue Mar 31 2020 21:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37363 * 125.83445 * 2 1 4 4 N 1.29400 * 108.83085 * 179.77621 * 3 2 1 5 5 N 1.40168 * 108.13770 * 0.37828 * 4 3 2 6 6 C 1.46499 * 126.34689 * 179.88012 * 5 4 3 7 7 C 1.53011 * 109.47358 * 269.69136 * 6 5 4 8 8 C 1.50701 * 109.47101 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00136 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00070 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47170 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 14 14 N 1.46496 * 109.47499 * 179.97438 * 13 12 11 15 15 C 1.36943 * 120.00274 * 270.00442 * 14 13 12 16 16 H 1.07997 * 120.00300 * 144.92526 * 15 14 13 17 17 C 1.38817 * 119.99408 * 324.92321 * 15 14 13 18 18 N 1.31620 * 120.00119 * 337.93451 * 17 15 14 19 19 Si 1.86796 * 119.99584 * 157.93810 * 17 15 14 20 20 H 1.48491 * 109.47473 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47099 * 120.00190 * 19 17 15 22 22 H 1.48498 * 109.47119 * 239.99265 * 19 17 15 23 23 C 1.46504 * 120.00237 * 89.99677 * 14 13 12 24 24 C 1.53000 * 117.49921 * 183.24237 * 23 14 13 25 25 C 1.52998 * 117.49703 * 114.57839 * 23 14 13 26 26 C 1.34817 * 125.83553 * 180.02562 * 2 1 3 27 27 O 1.21820 * 126.29814 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47198 * 269.97697 * 1 2 3 29 29 H 1.08996 * 109.47251 * 29.97858 * 1 2 3 30 30 H 1.09006 * 109.47201 * 149.97312 * 1 2 3 31 31 H 1.07994 * 125.58125 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47433 * 149.69192 * 6 5 4 33 33 H 1.09002 * 109.47599 * 29.69024 * 6 5 4 34 34 H 1.08993 * 109.46695 * 60.00147 * 7 6 5 35 35 H 1.08996 * 109.46597 * 300.00033 * 7 6 5 36 36 H 0.96999 * 119.99980 * 0.02562 * 10 8 7 37 37 H 1.09005 * 109.47069 * 59.99877 * 11 10 8 38 38 H 1.08992 * 109.47135 * 300.00012 * 11 10 8 39 39 H 1.09005 * 109.47181 * 59.99999 * 12 11 10 40 40 H 1.09004 * 109.47441 * 300.00128 * 12 11 10 41 41 H 1.09005 * 109.47091 * 59.99879 * 13 12 11 42 42 H 1.08998 * 109.47356 * 300.00334 * 13 12 11 43 43 H 0.96995 * 119.99672 * 175.91349 * 18 17 15 44 44 H 1.09004 * 115.54877 * 328.91115 * 23 14 13 45 45 H 1.08998 * 117.50153 * 359.97438 * 24 23 14 46 46 H 1.08995 * 117.49708 * 145.02504 * 24 23 14 47 47 H 1.08995 * 117.49988 * 214.98174 * 25 23 14 48 48 H 1.08997 * 117.49880 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7352 0.0048 5 7 3.5343 -0.6662 -0.0007 6 6 4.7312 -1.5109 -0.0005 7 6 5.1479 -1.8056 -1.4430 8 6 6.3788 -2.6751 -1.4427 9 8 6.8738 -3.0250 -0.3922 10 7 6.9295 -3.0638 -2.6097 11 6 8.1264 -3.9085 -2.6095 12 6 8.5428 -4.2033 -4.0519 13 6 9.7925 -5.0861 -4.0517 14 7 10.1909 -5.3689 -5.4327 15 6 9.6929 -6.4696 -6.0774 16 1 9.4837 -6.4268 -7.1361 17 6 9.4569 -7.6405 -5.3700 18 7 10.0838 -7.8607 -4.2339 19 14 8.2496 -8.9035 -6.0308 20 1 7.6818 -8.4210 -7.3151 21 1 8.9536 -10.1921 -6.2532 22 1 7.1535 -9.1016 -5.0487 23 6 11.1222 -4.4740 -6.1244 24 6 11.4404 -4.7806 -7.5892 25 6 12.4918 -5.0384 -6.5068 26 6 2.2542 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0006 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5143 31 1 1.9249 2.1373 0.0004 32 1 4.5150 -2.4473 0.5137 33 1 5.5414 -0.9931 0.5130 34 1 5.3641 -0.8692 -1.9571 35 1 4.3378 -2.3234 -1.9564 36 1 6.5338 -2.7836 -3.4499 37 1 7.9100 -4.8451 -2.0956 38 1 8.9363 -3.3909 -2.0957 39 1 8.7591 -3.2669 -4.5662 40 1 7.7327 -4.7212 -4.5654 41 1 9.5757 -6.0225 -3.5375 42 1 10.6027 -4.5687 -3.5380 43 1 9.8754 -8.6500 -3.7101 44 1 11.0744 -3.4260 -5.8284 45 1 10.9572 -5.6484 -8.0382 46 1 11.6025 -3.9344 -8.2567 47 1 13.3451 -4.3617 -6.4630 48 1 12.7002 -6.0754 -6.2435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713769208.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:32 Heat of formation + Delta-G solvation = 55.241092 kcal Electronic energy + Delta-G solvation = -28232.753278 eV Core-core repulsion = 24133.676250 eV Total energy + Delta-G solvation = -4099.077028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.74294 -39.65418 -37.54814 -37.15397 -36.06774 -35.25366 -33.57810 -33.09107 -31.60882 -30.31005 -29.26477 -27.84987 -25.78446 -24.68900 -23.34798 -22.56924 -21.46795 -21.38245 -20.99401 -20.21584 -19.58834 -18.07479 -17.23130 -16.78757 -16.43677 -16.42210 -15.90927 -15.71765 -15.56940 -15.29597 -14.85951 -14.63963 -14.37835 -14.16869 -13.77339 -13.42842 -13.22517 -13.09151 -13.00844 -12.63506 -12.59105 -12.23553 -12.16581 -11.93286 -11.57677 -11.42557 -11.01899 -10.82859 -10.73476 -10.67935 -10.56154 -10.49026 -10.18513 -10.10249 -9.79474 -9.64238 -9.56681 -9.26964 -8.90101 -8.86737 -8.48337 -6.59342 -5.80395 -3.41351 1.40041 1.57699 2.34990 2.67667 2.72310 3.32240 3.36593 3.42989 3.44341 4.05557 4.32518 4.43095 4.54455 4.57529 4.73239 4.83068 4.89783 4.92158 5.02320 5.16680 5.21261 5.31700 5.35343 5.51094 5.61020 5.66136 5.75170 5.86935 5.90432 6.01436 6.11553 6.16958 6.26549 6.37845 6.39544 6.48670 6.64375 6.68363 6.76261 7.02875 7.10260 7.21991 7.26399 7.60181 7.66391 7.72142 7.78766 8.27809 8.45399 9.13161 9.76382 10.31885 11.15118 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015859 B = 0.001928 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.187829 B =14517.675228 C =15352.484444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.564 5.564 3 C 0.251 3.749 4 N -0.279 5.279 5 N -0.451 5.451 6 C 0.177 3.823 7 C -0.160 4.160 8 C 0.517 3.483 9 O -0.544 6.544 10 N -0.723 5.723 11 C 0.120 3.880 12 C -0.145 4.145 13 C 0.148 3.852 14 N -0.551 5.551 15 C -0.258 4.258 16 H 0.066 0.934 17 C 0.010 3.990 18 N -0.882 5.882 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.287 1.287 23 C 0.120 3.880 24 C -0.197 4.197 25 C -0.222 4.222 26 C 0.641 3.359 27 O -0.550 6.550 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.400 0.600 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.028 0.972 43 H 0.255 0.745 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.947 21.143 6.830 27.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.293 5.293 3 C -0.048 4.048 4 N -0.100 5.100 5 N -0.272 5.272 6 C 0.056 3.944 7 C -0.202 4.202 8 C 0.302 3.698 9 O -0.422 6.422 10 N -0.374 5.374 11 C -0.003 4.003 12 C -0.185 4.185 13 C 0.022 3.978 14 N -0.268 5.268 15 C -0.387 4.387 16 H 0.084 0.916 17 C -0.190 4.190 18 N -0.524 5.524 19 Si 0.724 3.276 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.011 3.989 24 C -0.235 4.235 25 C -0.264 4.264 26 C 0.341 3.659 27 O -0.423 6.423 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.247 0.753 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.234 0.766 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.115 0.885 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.796 20.089 7.698 26.690 hybrid contribution -1.561 -0.667 -0.875 1.910 sum -17.357 19.423 6.823 26.927 Atomic orbital electron populations 1.21827 0.74171 1.04785 1.03578 1.45969 1.08946 1.06729 1.67677 1.25948 0.85866 0.94760 0.98241 1.77021 1.18150 0.92114 1.22736 1.49063 1.06278 1.03057 1.68767 1.21211 0.83222 0.93688 0.96272 1.22040 0.97486 1.01399 0.99230 1.20221 0.84790 0.80641 0.84196 1.90726 1.63600 1.56743 1.31155 1.46157 1.30534 1.52534 1.08154 1.21480 0.85585 0.94050 0.99185 1.22440 1.02446 1.00739 0.92905 1.20863 0.91078 0.99464 0.86422 1.43411 1.46930 1.25183 1.11255 1.19100 1.36670 0.88414 0.94542 0.91614 1.25135 0.99380 0.96358 0.98163 1.70045 1.39026 1.27574 1.15747 0.86368 0.81240 0.81383 0.78654 1.20089 1.21629 1.21336 1.21227 0.90890 0.93266 0.93498 1.23034 1.05074 1.02818 0.92590 1.23367 0.94068 1.02519 1.06397 1.16833 0.82188 0.85146 0.81777 1.91122 1.77660 1.15170 1.58362 0.90856 0.89287 0.89350 0.75319 0.87703 0.87687 0.88143 0.88422 0.76646 0.91350 0.91824 0.93194 0.91564 0.87973 0.95337 0.93517 0.89622 0.88512 0.90820 0.91254 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.34 11.05 59.84 0.66 1.00 16 2 N -0.56 -4.09 3.14 -130.11 -0.41 -4.50 16 3 C 0.25 1.31 12.66 -89.12 -1.13 0.18 16 4 N -0.28 -2.48 12.53 29.87 0.37 -2.11 16 5 N -0.45 -4.98 3.63 -65.12 -0.24 -5.22 16 6 C 0.18 2.00 5.68 -4.04 -0.02 1.97 16 7 C -0.16 -1.70 6.02 -27.88 -0.17 -1.87 16 8 C 0.52 7.21 7.83 -10.99 -0.09 7.12 16 9 O -0.54 -9.58 15.98 5.56 0.09 -9.49 16 10 N -0.72 -9.82 5.56 -60.30 -0.33 -10.16 16 11 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 12 C -0.14 -2.61 5.65 -26.73 -0.15 -2.76 16 13 C 0.15 3.30 5.34 -4.05 -0.02 3.27 16 14 N -0.55 -13.19 2.78 -165.66 -0.46 -13.65 16 15 C -0.26 -6.76 8.63 -15.05 -0.13 -6.89 16 16 H 0.07 1.74 6.55 -52.49 -0.34 1.39 16 17 C 0.01 0.27 4.96 -17.43 -0.09 0.18 16 18 N -0.88 -24.82 11.33 55.49 0.63 -24.19 16 19 Si 0.89 21.26 29.61 -169.99 -5.03 16.22 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.12 2.53 6.56 -67.93 -0.45 2.08 16 24 C -0.20 -3.85 9.80 -26.69 -0.26 -4.11 16 25 C -0.22 -4.53 10.36 -26.69 -0.28 -4.81 16 26 C 0.64 7.63 8.60 -86.74 -0.75 6.89 16 27 O -0.55 -8.60 17.71 5.08 0.09 -8.51 16 28 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.09 0.41 8.08 -51.93 -0.42 0.00 16 31 H 0.23 -0.10 8.06 -52.49 -0.42 -0.52 16 32 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.40 4.42 8.47 -40.82 -0.35 4.08 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.10 2.61 5.35 -51.93 -0.28 2.33 16 42 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 43 H 0.25 6.95 8.32 -40.82 -0.34 6.61 16 44 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 45 H 0.10 2.06 6.37 -51.93 -0.33 1.73 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -35.60 405.54 -9.67 -45.27 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.61 Total: 6.00 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.89 Total: 4.22 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.44 Total: -59.82 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.18 Total: -18.00 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.60 -9.67 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713769208.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.510 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds