Wall clock time and date at job start Tue Mar 31 2020 21:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37363 * 125.83445 * 2 1 4 4 N 1.29400 * 108.83085 * 179.77621 * 3 2 1 5 5 N 1.40168 * 108.13770 * 0.37828 * 4 3 2 6 6 C 1.46499 * 126.34689 * 179.88012 * 5 4 3 7 7 C 1.53011 * 109.47358 * 269.69136 * 6 5 4 8 8 C 1.50701 * 109.47101 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00136 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00070 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47170 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 14 14 N 1.46496 * 109.47499 * 179.97438 * 13 12 11 15 15 C 1.36943 * 120.00274 * 270.00442 * 14 13 12 16 16 H 1.07997 * 120.00300 * 144.92526 * 15 14 13 17 17 C 1.38817 * 119.99408 * 324.92321 * 15 14 13 18 18 N 1.31620 * 120.00119 * 337.93451 * 17 15 14 19 19 Si 1.86796 * 119.99584 * 157.93810 * 17 15 14 20 20 H 1.48491 * 109.47473 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47099 * 120.00190 * 19 17 15 22 22 H 1.48498 * 109.47119 * 239.99265 * 19 17 15 23 23 C 1.46504 * 120.00237 * 89.99677 * 14 13 12 24 24 C 1.53000 * 117.49921 * 183.24237 * 23 14 13 25 25 C 1.52998 * 117.49703 * 114.57839 * 23 14 13 26 26 C 1.34817 * 125.83553 * 180.02562 * 2 1 3 27 27 O 1.21820 * 126.29814 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47198 * 269.97697 * 1 2 3 29 29 H 1.08996 * 109.47251 * 29.97858 * 1 2 3 30 30 H 1.09006 * 109.47201 * 149.97312 * 1 2 3 31 31 H 1.07994 * 125.58125 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47433 * 149.69192 * 6 5 4 33 33 H 1.09002 * 109.47599 * 29.69024 * 6 5 4 34 34 H 1.08993 * 109.46695 * 60.00147 * 7 6 5 35 35 H 1.08996 * 109.46597 * 300.00033 * 7 6 5 36 36 H 0.96999 * 119.99980 * 0.02562 * 10 8 7 37 37 H 1.09005 * 109.47069 * 59.99877 * 11 10 8 38 38 H 1.08992 * 109.47135 * 300.00012 * 11 10 8 39 39 H 1.09005 * 109.47181 * 59.99999 * 12 11 10 40 40 H 1.09004 * 109.47441 * 300.00128 * 12 11 10 41 41 H 1.09005 * 109.47091 * 59.99879 * 13 12 11 42 42 H 1.08998 * 109.47356 * 300.00334 * 13 12 11 43 43 H 0.96995 * 119.99672 * 175.91349 * 18 17 15 44 44 H 1.09004 * 115.54877 * 328.91115 * 23 14 13 45 45 H 1.08998 * 117.50153 * 359.97438 * 24 23 14 46 46 H 1.08995 * 117.49708 * 145.02504 * 24 23 14 47 47 H 1.08995 * 117.49988 * 214.98174 * 25 23 14 48 48 H 1.08997 * 117.49880 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7352 0.0048 5 7 3.5343 -0.6662 -0.0007 6 6 4.7312 -1.5109 -0.0005 7 6 5.1479 -1.8056 -1.4430 8 6 6.3788 -2.6751 -1.4427 9 8 6.8738 -3.0250 -0.3922 10 7 6.9295 -3.0638 -2.6097 11 6 8.1264 -3.9085 -2.6095 12 6 8.5428 -4.2033 -4.0519 13 6 9.7925 -5.0861 -4.0517 14 7 10.1909 -5.3689 -5.4327 15 6 9.6929 -6.4696 -6.0774 16 1 9.4837 -6.4268 -7.1361 17 6 9.4569 -7.6405 -5.3700 18 7 10.0838 -7.8607 -4.2339 19 14 8.2496 -8.9035 -6.0308 20 1 7.6818 -8.4210 -7.3151 21 1 8.9536 -10.1921 -6.2532 22 1 7.1535 -9.1016 -5.0487 23 6 11.1222 -4.4740 -6.1244 24 6 11.4404 -4.7806 -7.5892 25 6 12.4918 -5.0384 -6.5068 26 6 2.2542 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0006 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5143 31 1 1.9249 2.1373 0.0004 32 1 4.5150 -2.4473 0.5137 33 1 5.5414 -0.9931 0.5130 34 1 5.3641 -0.8692 -1.9571 35 1 4.3378 -2.3234 -1.9564 36 1 6.5338 -2.7836 -3.4499 37 1 7.9100 -4.8451 -2.0956 38 1 8.9363 -3.3909 -2.0957 39 1 8.7591 -3.2669 -4.5662 40 1 7.7327 -4.7212 -4.5654 41 1 9.5757 -6.0225 -3.5375 42 1 10.6027 -4.5687 -3.5380 43 1 9.8754 -8.6500 -3.7101 44 1 11.0744 -3.4260 -5.8284 45 1 10.9572 -5.6484 -8.0382 46 1 11.6025 -3.9344 -8.2567 47 1 13.3451 -4.3617 -6.4630 48 1 12.7002 -6.0754 -6.2435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713769208.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:30 Heat of formation + Delta-G solvation = 32.183353 kcal Electronic energy + Delta-G solvation = -28233.753137 eV Core-core repulsion = 24133.676250 eV Total energy + Delta-G solvation = -4100.076887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.41146 -40.84425 -38.86700 -38.43721 -36.94151 -36.48555 -35.27137 -33.89417 -33.27467 -31.47527 -30.60683 -28.38811 -27.26831 -25.96241 -24.73906 -23.29005 -23.03014 -22.49154 -22.17861 -21.59511 -21.17819 -18.84980 -18.28076 -17.99126 -17.65115 -17.36183 -17.17709 -16.89437 -16.70333 -16.55535 -16.32946 -15.89721 -15.55361 -15.32665 -14.84329 -14.51738 -14.29121 -14.28284 -13.95231 -13.85252 -13.64510 -13.50129 -13.24429 -13.20367 -12.88885 -12.79169 -12.61854 -12.46134 -12.39849 -12.28472 -12.00641 -11.83058 -11.44934 -11.40145 -11.29709 -11.19433 -10.94989 -10.84826 -10.47704 -10.12906 -9.67632 -8.54054 -7.79855 -5.45119 0.71069 1.09077 1.41545 1.46263 1.53633 1.54201 1.54674 2.08507 2.35307 2.48895 3.14634 3.41436 3.44448 3.50992 3.60417 3.84831 3.97391 4.11994 4.18289 4.26890 4.28320 4.32830 4.34950 4.47146 4.53194 4.55550 4.60623 4.64691 4.68282 4.77273 4.81936 4.94417 4.94978 4.95968 5.08227 5.09027 5.13140 5.37008 5.42078 5.47906 5.55438 5.68937 5.69627 5.86489 6.44891 6.49263 6.62800 6.92622 7.14738 7.17118 7.86326 8.35144 9.10419 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015859 B = 0.001928 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.187829 B =14517.675228 C =15352.484444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.559 5.559 3 C 0.281 3.719 4 N -0.314 5.314 5 N -0.458 5.458 6 C 0.179 3.821 7 C -0.141 4.141 8 C 0.517 3.483 9 O -0.584 6.584 10 N -0.714 5.714 11 C 0.133 3.867 12 C -0.121 4.121 13 C 0.147 3.853 14 N -0.568 5.568 15 C -0.254 4.254 16 H 0.063 0.937 17 C -0.040 4.040 18 N -0.914 5.914 19 Si 0.950 3.050 20 H -0.265 1.265 21 H -0.295 1.295 22 H -0.291 1.291 23 C 0.101 3.899 24 C -0.181 4.181 25 C -0.223 4.223 26 C 0.623 3.377 27 O -0.602 6.602 28 H 0.084 0.916 29 H 0.134 0.866 30 H 0.069 0.931 31 H 0.291 0.709 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.415 0.585 37 H 0.042 0.958 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.031 0.969 43 H 0.249 0.751 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.112 0.888 47 H 0.101 0.899 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.456 25.061 5.520 31.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.017 4.017 4 N -0.135 5.135 5 N -0.277 5.277 6 C 0.057 3.943 7 C -0.182 4.182 8 C 0.304 3.696 9 O -0.464 6.464 10 N -0.365 5.365 11 C 0.008 3.992 12 C -0.161 4.161 13 C 0.020 3.980 14 N -0.285 5.285 15 C -0.384 4.384 16 H 0.081 0.919 17 C -0.237 4.237 18 N -0.558 5.558 19 Si 0.778 3.222 20 H -0.189 1.189 21 H -0.223 1.223 22 H -0.218 1.218 23 C -0.007 4.007 24 C -0.219 4.219 25 C -0.264 4.264 26 C 0.322 3.678 27 O -0.479 6.479 28 H 0.102 0.898 29 H 0.152 0.848 30 H 0.088 0.912 31 H 0.306 0.694 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.252 0.748 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.133 0.867 45 H 0.092 0.908 46 H 0.131 0.869 47 H 0.119 0.881 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.337 24.082 6.346 30.345 hybrid contribution -1.099 -1.755 -0.461 2.121 sum -18.436 22.328 5.885 29.548 Atomic orbital electron populations 1.22174 0.71843 1.06123 1.04775 1.46186 1.10210 1.05961 1.66238 1.27182 0.84357 0.96095 0.94051 1.77060 1.20348 0.90254 1.25871 1.49011 1.05728 1.04283 1.68691 1.21022 0.83676 0.93114 0.96482 1.21897 0.95501 1.01647 0.99134 1.20761 0.85229 0.80251 0.83407 1.90712 1.64901 1.58238 1.32595 1.45976 1.29683 1.51829 1.09050 1.21136 0.86741 0.93480 0.97824 1.22080 0.99789 1.00521 0.93750 1.20771 0.92949 0.98638 0.85621 1.43612 1.48036 1.25201 1.11667 1.19270 1.35684 0.88980 0.94458 0.91947 1.25762 1.01127 0.98131 0.98682 1.70175 1.40588 1.28048 1.17035 0.85492 0.79241 0.79144 0.78307 1.18934 1.22260 1.21801 1.21578 0.90551 0.94060 0.94472 1.23043 1.03437 1.03155 0.92243 1.23289 0.95153 1.00918 1.07029 1.17180 0.82977 0.85541 0.82107 1.91064 1.78577 1.17511 1.60790 0.89779 0.84776 0.91175 0.69420 0.90066 0.87554 0.85553 0.88055 0.74823 0.93963 0.91748 0.90924 0.92923 0.91531 0.95062 0.94153 0.86654 0.90796 0.86934 0.88052 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.05 127.77 1.41 1.79 16 2 N -0.56 -6.84 3.14 -683.70 -2.15 -8.99 16 3 C 0.28 1.87 12.66 179.82 2.28 4.15 16 4 N -0.31 -4.89 12.53 -59.42 -0.74 -5.63 16 5 N -0.46 -9.91 3.63 -478.00 -1.73 -11.64 16 6 C 0.18 4.13 5.68 86.38 0.49 4.62 16 7 C -0.14 -2.89 6.02 29.85 0.18 -2.71 16 8 C 0.52 14.35 7.83 87.66 0.69 15.03 16 9 O -0.58 -21.12 15.98 -3.03 -0.05 -21.17 16 10 N -0.71 -18.82 5.56 -463.07 -2.57 -21.39 16 11 C 0.13 4.37 5.67 86.38 0.49 4.86 16 12 C -0.12 -4.29 5.65 30.59 0.17 -4.12 16 13 C 0.15 6.59 5.34 86.38 0.46 7.05 16 14 N -0.57 -27.11 2.78 -678.03 -1.88 -29.00 16 15 C -0.25 -13.43 8.63 84.03 0.73 -12.70 16 16 H 0.06 3.30 6.55 -2.91 -0.02 3.29 16 17 C -0.04 -2.19 4.96 84.86 0.42 -1.77 16 18 N -0.91 -53.43 11.33 21.65 0.25 -53.18 16 19 Si 0.95 44.70 29.61 68.60 2.03 46.73 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 C 0.10 4.08 6.56 44.99 0.30 4.38 16 24 C -0.18 -6.66 9.80 30.62 0.30 -6.36 16 25 C -0.22 -8.79 10.36 30.62 0.32 -8.47 16 26 C 0.62 14.76 8.60 178.99 1.54 16.30 16 27 O -0.60 -19.68 17.71 -4.73 -0.08 -19.76 16 28 H 0.08 0.20 8.14 -2.39 -0.02 0.19 16 29 H 0.13 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H 0.07 0.60 8.08 -2.38 -0.02 0.58 16 31 H 0.29 -2.06 8.06 -2.91 -0.02 -2.09 16 32 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 33 H 0.11 2.36 8.10 -2.39 -0.02 2.34 16 34 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.42 8.42 8.47 -92.71 -0.79 7.63 16 37 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.07 3.54 5.35 -2.38 -0.01 3.53 16 42 H 0.03 1.35 8.07 -2.39 -0.02 1.33 16 43 H 0.25 14.21 8.32 -92.71 -0.77 13.44 16 44 H 0.12 3.95 8.14 -2.38 -0.02 3.93 16 45 H 0.07 3.08 6.37 -2.39 -0.02 3.06 16 46 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 47 H 0.10 3.31 8.14 -2.39 -0.02 3.30 16 48 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -82.91 405.54 3.01 -79.90 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.18 Total: 22.08 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 9.77 Total: 22.06 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -8.84 Total: -129.84 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.13 Total: -40.94 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -82.91 3.01 -79.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713769208.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.085 kcal (2) G-P(sol) polarization free energy of solvation -82.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds