Wall clock time and date at job start Tue Mar 31 2020 21:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37362 * 125.83497 * 2 1 4 4 N 1.29394 * 108.82939 * 179.97438 * 3 2 1 5 5 N 1.40167 * 108.14612 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.35354 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46738 * 270.02001 * 6 5 4 8 8 C 1.50699 * 109.46703 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00496 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99771 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99806 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47000 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.52358 * 305.08147 * 12 11 10 14 14 C 1.53036 * 109.49370 * 185.00216 * 12 11 10 15 15 C 1.53049 * 109.52204 * 178.69272 * 14 12 11 16 16 C 1.53163 * 109.32731 * 61.37101 * 15 14 12 17 17 N 1.46926 * 108.76686 * 305.35365 * 16 15 14 18 18 C 1.36941 * 120.62963 * 233.59015 * 17 16 15 19 19 H 1.07994 * 119.99972 * 151.84875 * 18 17 16 20 20 C 1.38815 * 119.99858 * 331.84727 * 18 17 16 21 21 N 1.31614 * 120.00095 * 343.06725 * 20 18 17 22 22 Si 1.86794 * 119.99885 * 163.06326 * 20 18 17 23 23 H 1.48509 * 109.47251 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47263 * 120.00209 * 22 20 18 25 25 H 1.48500 * 109.47387 * 240.00602 * 22 20 18 26 26 C 1.46919 * 118.73978 * 53.61163 * 17 16 15 27 27 C 1.34820 * 125.83127 * 180.28638 * 2 1 3 28 28 O 1.21812 * 126.30403 * 0.04306 * 27 2 1 29 29 H 1.09005 * 109.46826 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47409 * 120.02146 * 1 2 3 31 31 H 1.08993 * 109.47111 * 240.02781 * 1 2 3 32 32 H 1.08001 * 125.58675 * 0.02562 * 3 2 1 33 33 H 1.09005 * 109.46774 * 150.01995 * 6 5 4 34 34 H 1.08994 * 109.47011 * 30.02131 * 6 5 4 35 35 H 1.08998 * 109.46869 * 60.00317 * 7 6 5 36 36 H 1.09004 * 109.47438 * 299.99707 * 7 6 5 37 37 H 0.96990 * 120.00169 * 359.97438 * 10 8 7 38 38 H 1.09006 * 109.47258 * 59.99972 * 11 10 8 39 39 H 1.08994 * 109.47011 * 299.99898 * 11 10 8 40 40 H 1.08996 * 109.46300 * 298.69898 * 14 12 11 41 41 H 1.08997 * 109.46535 * 58.67929 * 14 12 11 42 42 H 1.09001 * 109.49269 * 181.30814 * 15 14 12 43 43 H 1.09003 * 109.49439 * 301.40237 * 15 14 12 44 44 H 1.08998 * 109.58554 * 185.57050 * 16 15 14 45 45 H 1.08997 * 109.71004 * 65.21211 * 16 15 14 46 46 H 0.97003 * 120.00125 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.58964 * 186.59880 * 26 17 16 48 48 H 1.09007 * 109.70249 * 66.24730 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5065 0.7352 0.0005 5 7 3.5344 -0.6662 0.0003 6 6 4.7314 -1.5110 0.0013 7 6 5.1496 -1.8043 -1.4409 8 6 6.3805 -2.6738 -1.4399 9 8 6.8743 -3.0247 -0.3891 10 7 6.9326 -3.0615 -2.6067 11 6 8.1295 -3.9063 -2.6057 12 6 8.5478 -4.1998 -4.0479 13 1 7.7080 -4.6354 -4.5892 14 6 9.7213 -5.1821 -4.0495 15 6 10.1191 -5.5014 -5.4925 16 6 10.5655 -4.2140 -6.1919 17 7 9.4964 -3.2137 -6.0682 18 6 8.9947 -2.5879 -7.1781 19 1 7.9757 -2.2301 -7.1820 20 6 9.7959 -2.4134 -8.2982 21 7 11.1026 -2.5343 -8.1980 22 14 9.0193 -2.0070 -9.9478 23 1 7.5444 -1.9261 -9.7942 24 1 9.5384 -0.7025 -10.4314 25 1 9.3576 -3.0689 -10.9292 26 6 8.9762 -2.8974 -4.7311 27 6 2.2542 -1.0930 -0.0055 28 8 1.8805 -2.2524 -0.0120 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5141 -0.8897 31 1 -0.3633 -0.5134 0.8902 32 1 1.9251 2.1373 0.0004 33 1 4.5144 -2.4479 0.5145 34 1 5.5408 -0.9936 0.5163 35 1 5.3665 -0.8674 -1.9539 36 1 4.3402 -2.3218 -1.9559 37 1 6.5375 -2.7812 -3.4469 38 1 7.9125 -4.8434 -2.0928 39 1 8.9388 -3.3891 -2.0904 40 1 10.5690 -4.7360 -3.5295 41 1 9.4267 -6.1008 -3.5423 42 1 10.9397 -6.2188 -5.4933 43 1 9.2645 -5.9248 -6.0202 44 1 10.7552 -4.4176 -7.2458 45 1 11.4745 -3.8371 -5.7232 46 1 11.6624 -2.4127 -8.9808 47 1 8.1174 -2.2322 -4.8211 48 1 9.7532 -2.4129 -4.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714037839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:58 Heat of formation + Delta-G solvation = 22.272553 kcal Electronic energy + Delta-G solvation = -28825.084860 eV Core-core repulsion = 24724.578209 eV Total energy + Delta-G solvation = -4100.506651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.72329 -39.79305 -37.85523 -37.53120 -36.00220 -34.83390 -33.16369 -32.93344 -30.74633 -30.45227 -29.83857 -27.86925 -25.94959 -25.30466 -24.34875 -22.66964 -22.11524 -21.43627 -20.92959 -20.32147 -19.06072 -18.06185 -17.26652 -16.89614 -16.62845 -16.38215 -15.89516 -15.77353 -15.56720 -14.94305 -14.75847 -14.53945 -14.17853 -13.85082 -13.50038 -13.44079 -13.31572 -13.24363 -12.99050 -12.79821 -12.58381 -12.33131 -12.24421 -12.18999 -12.16277 -11.48737 -11.30027 -11.04064 -10.74727 -10.54796 -10.50223 -10.46646 -10.23474 -10.19730 -9.99719 -9.88749 -9.56998 -9.43280 -8.94765 -8.88380 -8.49277 -6.69566 -5.81542 -3.24722 1.41745 1.60892 2.36118 2.63041 2.73917 3.30799 3.34371 3.42328 3.44027 4.04721 4.34920 4.45633 4.54950 4.57666 4.76911 4.81089 4.91080 5.03085 5.10062 5.22398 5.28767 5.36251 5.42774 5.45762 5.52720 5.60649 5.62029 5.82331 5.87734 5.94745 5.99201 6.18809 6.22617 6.31727 6.36567 6.49022 6.57898 6.68865 6.76017 6.84816 6.94874 7.28557 7.38431 7.53991 7.65823 7.73241 7.76335 8.21831 8.42050 9.18268 9.81765 10.38716 11.26692 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.002197 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.944080 B =12741.889952 C =14192.531531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.564 5.564 3 C 0.251 3.749 4 N -0.278 5.278 5 N -0.451 5.451 6 C 0.178 3.822 7 C -0.162 4.162 8 C 0.520 3.480 9 O -0.548 6.548 10 N -0.721 5.721 11 C 0.127 3.873 12 C -0.118 4.118 13 H 0.073 0.927 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.154 3.846 27 C 0.642 3.358 28 O -0.552 6.552 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.231 0.769 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.404 0.596 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.018 0.982 46 H 0.253 0.747 47 H 0.049 0.951 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.408 5.824 16.078 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.293 5.293 3 C -0.048 4.048 4 N -0.099 5.099 5 N -0.272 5.272 6 C 0.057 3.943 7 C -0.203 4.203 8 C 0.306 3.694 9 O -0.426 6.426 10 N -0.372 5.372 11 C 0.003 3.997 12 C -0.139 4.139 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.027 3.973 27 C 0.341 3.659 28 O -0.425 6.425 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.247 0.753 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.239 0.761 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -17.155 5.009 16.684 24.449 hybrid contribution -1.283 0.271 -1.445 1.951 sum -18.438 5.280 15.239 24.497 Atomic orbital electron populations 1.21804 0.74152 1.04162 1.03992 1.45977 1.08940 1.06744 1.67651 1.25984 0.85864 0.94723 0.98216 1.77037 1.18143 0.92029 1.22706 1.49060 1.06246 1.03107 1.68744 1.21193 0.83270 0.93619 0.96217 1.22049 0.97338 1.01626 0.99289 1.20210 0.84782 0.80452 0.84007 1.90710 1.63832 1.56910 1.31170 1.46069 1.30133 1.52476 1.08515 1.21485 0.86305 0.93962 0.97946 1.21957 0.98871 0.99753 0.93284 0.90878 1.21341 0.97181 0.97362 0.97896 1.22166 1.00186 1.00348 0.95378 1.20790 0.89168 0.85176 1.00552 1.44044 1.42802 1.43849 1.00704 1.19187 0.94571 1.33029 0.91491 0.91749 1.25054 0.94983 1.00194 0.99423 1.70045 1.02497 1.53351 1.28635 0.86241 0.78729 0.77589 0.84291 1.20283 1.21728 1.21547 1.20893 0.96655 0.92263 0.87478 1.16814 0.82159 0.85124 0.81798 1.91106 1.77728 1.15202 1.58441 0.88829 0.90415 0.90485 0.75288 0.87800 0.87681 0.87852 0.88367 0.76093 0.91901 0.91463 0.92451 0.93421 0.93170 0.92759 0.89604 0.96410 0.93658 0.93206 0.96339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.36 11.08 59.85 0.66 1.02 16 2 N -0.56 -4.19 3.14 -130.11 -0.41 -4.59 16 3 C 0.25 1.40 12.61 -89.12 -1.12 0.28 16 4 N -0.28 -2.59 12.53 29.87 0.37 -2.21 16 5 N -0.45 -5.02 3.63 -65.12 -0.24 -5.26 16 6 C 0.18 1.98 5.68 -4.04 -0.02 1.96 16 7 C -0.16 -1.72 6.02 -27.88 -0.17 -1.89 16 8 C 0.52 6.95 7.83 -10.98 -0.09 6.86 16 9 O -0.55 -9.02 15.98 5.55 0.09 -8.93 16 10 N -0.72 -9.44 5.33 -60.29 -0.32 -9.76 16 11 C 0.13 1.83 5.07 -4.04 -0.02 1.81 16 12 C -0.12 -1.92 2.37 -90.50 -0.21 -2.14 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 14 C -0.10 -1.63 5.17 -26.69 -0.14 -1.77 16 15 C -0.14 -2.66 6.08 -26.62 -0.16 -2.82 16 16 C 0.17 3.97 5.30 -3.73 -0.02 3.95 16 17 N -0.59 -14.44 2.99 -172.34 -0.52 -14.95 16 18 C -0.25 -6.78 9.58 -15.06 -0.14 -6.93 16 19 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.93 11.20 55.49 0.62 -25.31 16 22 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.15 3.06 5.60 -3.72 -0.02 3.04 16 27 C 0.64 7.64 8.61 -86.72 -0.75 6.89 16 28 O -0.55 -8.49 17.77 5.09 0.09 -8.40 16 29 H 0.09 -0.02 8.07 -51.93 -0.42 -0.44 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.23 0.00 8.06 -52.49 -0.42 -0.43 16 33 H 0.10 1.24 8.07 -51.93 -0.42 0.83 16 34 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 4.77 7.71 -40.82 -0.31 4.46 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.05 0.95 7.14 -51.93 -0.37 0.57 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -36.26 394.63 -9.41 -45.67 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.73 Total: 1.21 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -2.29 Total: 10.24 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.49 Total: -62.09 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.18 Total: -17.33 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.26 -9.41 -45.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714037839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.943 kcal (2) G-P(sol) polarization free energy of solvation -36.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds