Wall clock time and date at job start Tue Mar 31 2020 21:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37362 * 125.83497 * 2 1 4 4 N 1.29394 * 108.82939 * 179.97438 * 3 2 1 5 5 N 1.40167 * 108.14612 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.35354 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46738 * 270.02001 * 6 5 4 8 8 C 1.50699 * 109.46703 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00496 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99771 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99806 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47000 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.52358 * 305.08147 * 12 11 10 14 14 C 1.53036 * 109.49370 * 185.00216 * 12 11 10 15 15 C 1.53049 * 109.52204 * 178.69272 * 14 12 11 16 16 C 1.53163 * 109.32731 * 61.37101 * 15 14 12 17 17 N 1.46926 * 108.76686 * 305.35365 * 16 15 14 18 18 C 1.36941 * 120.62963 * 233.59015 * 17 16 15 19 19 H 1.07994 * 119.99972 * 151.84875 * 18 17 16 20 20 C 1.38815 * 119.99858 * 331.84727 * 18 17 16 21 21 N 1.31614 * 120.00095 * 343.06725 * 20 18 17 22 22 Si 1.86794 * 119.99885 * 163.06326 * 20 18 17 23 23 H 1.48509 * 109.47251 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47263 * 120.00209 * 22 20 18 25 25 H 1.48500 * 109.47387 * 240.00602 * 22 20 18 26 26 C 1.46919 * 118.73978 * 53.61163 * 17 16 15 27 27 C 1.34820 * 125.83127 * 180.28638 * 2 1 3 28 28 O 1.21812 * 126.30403 * 0.04306 * 27 2 1 29 29 H 1.09005 * 109.46826 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47409 * 120.02146 * 1 2 3 31 31 H 1.08993 * 109.47111 * 240.02781 * 1 2 3 32 32 H 1.08001 * 125.58675 * 0.02562 * 3 2 1 33 33 H 1.09005 * 109.46774 * 150.01995 * 6 5 4 34 34 H 1.08994 * 109.47011 * 30.02131 * 6 5 4 35 35 H 1.08998 * 109.46869 * 60.00317 * 7 6 5 36 36 H 1.09004 * 109.47438 * 299.99707 * 7 6 5 37 37 H 0.96990 * 120.00169 * 359.97438 * 10 8 7 38 38 H 1.09006 * 109.47258 * 59.99972 * 11 10 8 39 39 H 1.08994 * 109.47011 * 299.99898 * 11 10 8 40 40 H 1.08996 * 109.46300 * 298.69898 * 14 12 11 41 41 H 1.08997 * 109.46535 * 58.67929 * 14 12 11 42 42 H 1.09001 * 109.49269 * 181.30814 * 15 14 12 43 43 H 1.09003 * 109.49439 * 301.40237 * 15 14 12 44 44 H 1.08998 * 109.58554 * 185.57050 * 16 15 14 45 45 H 1.08997 * 109.71004 * 65.21211 * 16 15 14 46 46 H 0.97003 * 120.00125 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.58964 * 186.59880 * 26 17 16 48 48 H 1.09007 * 109.70249 * 66.24730 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5065 0.7352 0.0005 5 7 3.5344 -0.6662 0.0003 6 6 4.7314 -1.5110 0.0013 7 6 5.1496 -1.8043 -1.4409 8 6 6.3805 -2.6738 -1.4399 9 8 6.8743 -3.0247 -0.3891 10 7 6.9326 -3.0615 -2.6067 11 6 8.1295 -3.9063 -2.6057 12 6 8.5478 -4.1998 -4.0479 13 1 7.7080 -4.6354 -4.5892 14 6 9.7213 -5.1821 -4.0495 15 6 10.1191 -5.5014 -5.4925 16 6 10.5655 -4.2140 -6.1919 17 7 9.4964 -3.2137 -6.0682 18 6 8.9947 -2.5879 -7.1781 19 1 7.9757 -2.2301 -7.1820 20 6 9.7959 -2.4134 -8.2982 21 7 11.1026 -2.5343 -8.1980 22 14 9.0193 -2.0070 -9.9478 23 1 7.5444 -1.9261 -9.7942 24 1 9.5384 -0.7025 -10.4314 25 1 9.3576 -3.0689 -10.9292 26 6 8.9762 -2.8974 -4.7311 27 6 2.2542 -1.0930 -0.0055 28 8 1.8805 -2.2524 -0.0120 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5141 -0.8897 31 1 -0.3633 -0.5134 0.8902 32 1 1.9251 2.1373 0.0004 33 1 4.5144 -2.4479 0.5145 34 1 5.5408 -0.9936 0.5163 35 1 5.3665 -0.8674 -1.9539 36 1 4.3402 -2.3218 -1.9559 37 1 6.5375 -2.7812 -3.4469 38 1 7.9125 -4.8434 -2.0928 39 1 8.9388 -3.3891 -2.0904 40 1 10.5690 -4.7360 -3.5295 41 1 9.4267 -6.1008 -3.5423 42 1 10.9397 -6.2188 -5.4933 43 1 9.2645 -5.9248 -6.0202 44 1 10.7552 -4.4176 -7.2458 45 1 11.4745 -3.8371 -5.7232 46 1 11.6624 -2.4127 -8.9808 47 1 8.1174 -2.2322 -4.8211 48 1 9.7532 -2.4129 -4.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714037839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:56 Heat of formation + Delta-G solvation = -1.718587 kcal Electronic energy + Delta-G solvation = -28826.125194 eV Core-core repulsion = 24724.578209 eV Total energy + Delta-G solvation = -4101.546985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.40126 -40.93212 -39.38528 -38.41938 -36.76173 -36.22006 -34.68904 -33.81826 -32.30816 -32.05597 -30.82211 -28.40554 -27.29434 -26.99173 -25.33291 -23.83664 -23.32459 -22.52556 -22.10949 -21.46566 -20.56610 -18.86526 -18.65444 -17.97204 -17.65774 -17.19315 -16.93702 -16.79064 -16.72050 -16.50744 -15.89694 -15.66545 -15.42959 -15.06751 -14.84292 -14.55962 -14.44090 -14.38443 -14.02446 -13.87300 -13.74319 -13.49258 -13.45695 -13.24990 -13.00904 -12.89830 -12.88747 -12.52307 -12.39050 -12.24243 -11.95628 -11.82658 -11.58528 -11.39201 -11.35892 -11.16339 -11.09400 -10.86155 -10.54340 -10.09327 -9.66557 -8.67832 -7.86963 -5.32999 0.73123 1.09712 1.45984 1.48147 1.54477 1.56010 1.58166 2.10832 2.37116 2.50840 3.27905 3.45303 3.58746 3.63829 3.85693 3.97617 3.98964 4.02221 4.07721 4.13166 4.30243 4.34146 4.40878 4.50161 4.57499 4.61652 4.65583 4.70239 4.77092 4.81894 4.88419 4.91088 4.96514 5.00918 5.10205 5.10753 5.22604 5.33163 5.38292 5.47189 5.57145 5.66848 5.69908 5.78466 6.38943 6.48036 6.63598 6.93471 7.14897 7.15424 7.86292 8.38419 9.19398 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.002197 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.944080 B =12741.889952 C =14192.531531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.559 5.559 3 C 0.279 3.721 4 N -0.317 5.317 5 N -0.458 5.458 6 C 0.180 3.820 7 C -0.146 4.146 8 C 0.522 3.478 9 O -0.580 6.580 10 N -0.717 5.717 11 C 0.137 3.863 12 C -0.101 4.101 13 H 0.075 0.925 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.610 5.610 18 C -0.259 4.259 19 H 0.070 0.930 20 C -0.054 4.054 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.292 1.292 26 C 0.152 3.848 27 C 0.624 3.376 28 O -0.600 6.600 29 H 0.142 0.858 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.290 0.710 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.412 0.588 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.051 0.949 45 H -0.007 1.007 46 H 0.249 0.751 47 H 0.057 0.943 48 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.867 7.022 16.624 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.286 5.286 3 C -0.018 4.018 4 N -0.138 5.138 5 N -0.278 5.278 6 C 0.059 3.941 7 C -0.187 4.187 8 C 0.309 3.691 9 O -0.460 6.460 10 N -0.369 5.369 11 C 0.013 3.987 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.333 5.333 18 C -0.389 4.389 19 H 0.088 0.912 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.188 1.188 24 H -0.221 1.221 25 H -0.219 1.219 26 C 0.026 3.974 27 C 0.323 3.677 28 O -0.477 6.477 29 H 0.160 0.840 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.305 0.695 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.248 0.752 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.011 0.989 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -19.662 6.246 17.242 26.887 hybrid contribution -0.569 0.002 -1.555 1.656 sum -20.231 6.248 15.687 26.352 Atomic orbital electron populations 1.22161 0.71812 1.07222 1.03534 1.46202 1.10222 1.05969 1.66230 1.27192 0.84417 0.96095 0.94102 1.77069 1.20393 0.90473 1.25854 1.49043 1.05845 1.04198 1.68671 1.21034 0.83592 0.93230 0.96292 1.21923 0.95973 1.01581 0.99239 1.20578 0.85066 0.80091 0.83378 1.90698 1.64889 1.58156 1.32279 1.46026 1.29709 1.52175 1.08943 1.21290 0.86593 0.94518 0.96329 1.21718 0.98868 0.97557 0.93953 0.90631 1.21341 0.97122 0.98771 0.96319 1.21996 1.00705 0.97863 0.96354 1.20622 0.88541 0.87328 0.98799 1.44319 1.42875 1.44202 1.01900 1.19558 0.94810 1.32129 0.92425 0.91206 1.25823 0.95386 1.00999 1.02686 1.70202 1.03796 1.55167 1.29100 0.85224 0.78523 0.76738 0.80058 1.18797 1.22099 1.21889 1.21026 0.96319 0.94437 0.85573 1.17156 0.82896 0.85541 0.82100 1.91050 1.78585 1.17348 1.60722 0.83983 0.91015 0.90917 0.69533 0.89452 0.87730 0.86468 0.87932 0.75190 0.90997 0.92221 0.92570 0.90225 0.91271 0.92879 0.93101 0.98893 0.94207 0.92454 0.97525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.08 127.77 1.42 1.83 16 2 N -0.56 -7.08 3.14 -683.69 -2.15 -9.23 16 3 C 0.28 2.15 12.61 179.82 2.27 4.42 16 4 N -0.32 -5.29 12.53 -59.42 -0.74 -6.04 16 5 N -0.46 -10.02 3.63 -478.00 -1.73 -11.75 16 6 C 0.18 4.06 5.68 86.38 0.49 4.55 16 7 C -0.15 -3.02 6.02 29.85 0.18 -2.84 16 8 C 0.52 13.56 7.83 87.66 0.69 14.24 16 9 O -0.58 -18.94 15.98 -3.05 -0.05 -18.99 16 10 N -0.72 -17.78 5.33 -463.03 -2.47 -20.25 16 11 C 0.14 3.72 5.07 86.38 0.44 4.16 16 12 C -0.10 -3.11 2.37 -10.72 -0.03 -3.13 16 13 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 14 C -0.10 -2.99 5.17 30.62 0.16 -2.83 16 15 C -0.13 -4.74 6.08 30.67 0.19 -4.56 16 16 C 0.17 8.30 5.30 86.35 0.46 8.76 16 17 N -0.61 -29.96 2.99 -699.17 -2.09 -32.05 16 18 C -0.26 -13.92 9.58 84.03 0.81 -13.12 16 19 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 20 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 21 N -0.94 -55.48 11.20 21.65 0.24 -55.24 16 22 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 C 0.15 5.97 5.60 86.36 0.48 6.46 16 27 C 0.62 14.69 8.61 178.99 1.54 16.23 16 28 O -0.60 -19.03 17.77 -4.71 -0.08 -19.12 16 29 H 0.14 -0.76 8.07 -2.38 -0.02 -0.78 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.29 -1.70 8.06 -2.91 -0.02 -1.73 16 33 H 0.09 2.21 8.07 -2.38 -0.02 2.20 16 34 H 0.10 2.30 8.10 -2.39 -0.02 2.28 16 35 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.41 9.03 7.71 -92.72 -0.71 8.31 16 38 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.05 2.78 6.06 -2.39 -0.01 2.77 16 45 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.06 2.12 7.14 -2.39 -0.02 2.11 16 48 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 Total: -1.00 -82.72 394.63 2.70 -80.01 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.25 Total: 14.68 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: 9.50 Total: 31.60 kcal Atomic # 7 Polarization: -125.62 SS G_CDS: -8.94 Total: -134.57 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.13 Total: -38.11 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -82.72 2.70 -80.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714037839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.296 kcal (2) G-P(sol) polarization free energy of solvation -82.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds