Wall clock time and date at job start Tue Mar 31 2020 20:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47225 * 2 1 4 4 C 1.46896 * 111.00072 * 59.18248 * 3 2 1 5 5 C 1.52999 * 109.47335 * 66.04589 * 4 3 2 6 6 N 1.46501 * 109.47183 * 179.97438 * 5 4 3 7 7 C 1.34772 * 119.99943 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00194 * 180.02562 * 7 6 5 10 10 N 1.46498 * 109.47587 * 179.97438 * 9 7 6 11 11 C 1.35035 * 126.40133 * 265.03197 * 10 9 7 12 12 N 1.30500 * 108.70247 * 180.20644 * 11 10 9 13 13 C 1.34128 * 109.25391 * 359.62261 * 12 11 10 14 14 C 1.34669 * 108.02009 * 0.37443 * 13 12 11 15 15 C 1.50700 * 126.59180 * 179.81025 * 14 13 12 16 16 C 1.46901 * 110.99830 * 295.22813 * 3 2 1 17 17 C 1.50707 * 109.46897 * 288.23817 * 16 3 2 18 18 O 1.21287 * 120.00188 * 354.30126 * 17 16 3 19 19 N 1.34777 * 119.99833 * 174.30025 * 17 16 3 20 20 C 1.37092 * 120.00360 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99470 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00633 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00082 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99629 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47054 * 89.99825 * 24 22 20 26 26 H 1.48498 * 109.47360 * 209.99714 * 24 22 20 27 27 H 1.48506 * 109.47267 * 329.99993 * 24 22 20 28 28 H 1.09000 * 109.47102 * 59.98568 * 1 2 3 29 29 H 1.08993 * 109.47280 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46956 * 299.99045 * 1 2 3 31 31 H 1.08998 * 109.47121 * 239.99912 * 2 1 3 32 32 H 1.09005 * 109.47181 * 119.99885 * 2 1 3 33 33 H 1.09001 * 109.46921 * 306.04488 * 4 3 2 34 34 H 1.09006 * 109.46891 * 186.04721 * 4 3 2 35 35 H 1.09001 * 109.46686 * 60.00194 * 5 4 3 36 36 H 1.08993 * 109.47215 * 300.00205 * 5 4 3 37 37 H 0.97000 * 119.99709 * 359.97438 * 6 5 4 38 38 H 1.09007 * 109.47099 * 59.99733 * 9 7 6 39 39 H 1.09000 * 109.46973 * 300.00585 * 9 7 6 40 40 H 1.07997 * 125.65233 * 359.93649 * 11 10 9 41 41 H 1.08005 * 125.99344 * 180.11539 * 13 12 11 42 42 H 1.09000 * 109.47477 * 269.96008 * 15 14 13 43 43 H 1.09000 * 109.46918 * 29.96168 * 15 14 13 44 44 H 1.09000 * 109.46890 * 149.95711 * 15 14 13 45 45 H 1.09000 * 109.47439 * 48.23494 * 16 3 2 46 46 H 1.08995 * 109.47278 * 168.24098 * 16 3 2 47 47 H 0.97010 * 120.00031 * 359.97438 * 19 17 16 48 48 H 0.97001 * 119.99696 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5328 2.1155 1.1778 5 6 2.1474 1.5122 2.4423 6 7 1.6623 2.2411 3.6168 7 6 2.0735 1.8832 4.8493 8 8 2.8456 0.9580 4.9861 9 6 1.5741 2.6327 6.0576 10 7 2.1627 2.0551 7.2684 11 6 1.6031 1.1173 8.0626 12 7 2.4225 0.8573 9.0445 13 6 3.5270 1.6061 8.9088 14 6 3.3831 2.3648 7.8055 15 6 4.3752 3.3624 7.2656 16 6 1.6440 2.0761 -1.2406 17 6 2.4641 1.5367 -2.3842 18 8 3.3516 0.7382 -2.1703 19 7 2.2113 1.9417 -3.6446 20 6 2.9569 1.4507 -4.6850 21 1 3.7467 0.7390 -4.4946 22 6 2.6960 1.8678 -5.9845 23 7 3.4110 1.3975 -6.9816 24 14 1.3296 3.0983 -6.3138 25 1 1.8778 4.4768 -6.2460 26 1 0.7614 2.8574 -7.6645 27 1 0.2632 2.9389 -5.2926 28 1 -0.3633 0.5141 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.4467 2.0388 1.2295 34 1 1.8196 3.1642 1.0990 35 1 3.2335 1.5889 2.3905 36 1 1.8606 0.4636 2.5210 37 1 1.0457 2.9819 3.5073 38 1 0.4880 2.5556 6.1096 39 1 1.8604 3.6814 5.9785 40 1 0.6356 0.6614 7.9129 41 1 4.3803 1.6044 9.5709 42 1 4.1782 4.3424 7.7000 43 1 5.3857 3.0465 7.5248 44 1 4.2793 3.4196 6.1813 45 1 0.5858 1.9106 -1.4427 46 1 1.8304 3.1445 -1.1321 47 1 1.5012 2.5802 -3.8157 48 1 3.2291 1.6890 -7.8887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714588384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:17 Heat of formation + Delta-G solvation = 11.930723 kcal Electronic energy + Delta-G solvation = -28508.121155 eV Core-core repulsion = 24407.166048 eV Total energy + Delta-G solvation = -4100.955107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.45451 -40.07040 -39.07974 -37.34962 -35.10148 -34.40419 -33.92599 -32.26543 -31.70859 -30.71319 -30.03691 -28.09116 -26.72037 -26.22527 -24.28225 -23.67915 -21.79841 -21.45965 -20.65218 -20.00576 -19.28322 -18.20974 -17.90624 -17.59762 -16.50376 -16.39669 -15.92850 -15.82903 -15.42221 -15.08178 -14.92893 -14.74733 -14.22572 -13.99632 -13.76129 -13.59888 -13.48842 -13.34556 -13.19702 -13.10442 -13.03957 -12.73641 -12.70860 -12.46457 -12.18762 -11.97649 -11.83350 -11.60755 -11.30983 -11.11115 -10.76443 -10.63681 -10.61183 -10.21784 -10.00564 -9.79998 -9.57851 -9.48280 -8.65900 -8.55324 -8.20658 -8.05760 -6.33468 -3.84954 1.60841 2.04773 2.20976 2.73619 2.95454 2.97878 3.02778 3.11509 3.71177 3.83111 4.06903 4.07234 4.14339 4.36264 4.37405 4.44139 4.60951 4.71138 4.81576 4.84291 5.08314 5.13233 5.16806 5.18897 5.21814 5.25988 5.41508 5.45597 5.46440 5.51800 5.61651 5.64558 5.73532 5.84119 5.91355 5.99596 6.03774 6.10609 6.37804 6.47203 6.78580 6.95142 7.03157 7.14004 7.55626 7.67451 7.80715 8.12065 8.57858 8.93211 9.39892 9.81275 10.79732 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028098 B = 0.001753 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.263676 B =15973.307283 C =16140.709395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.045 3.955 3 N -0.507 5.507 4 C 0.040 3.960 5 C 0.122 3.878 6 N -0.724 5.724 7 C 0.492 3.508 8 O -0.513 6.513 9 C 0.086 3.914 10 N -0.444 5.444 11 C 0.188 3.812 12 N -0.491 5.491 13 C -0.029 4.029 14 C -0.014 4.014 15 C -0.078 4.078 16 C 0.040 3.960 17 C 0.452 3.548 18 O -0.556 6.556 19 N -0.593 5.593 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.271 1.271 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.203 0.797 41 H 0.169 0.831 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.055 0.945 46 H 0.089 0.911 47 H 0.369 0.631 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.350 8.918 25.759 29.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.082 4.082 3 N -0.230 5.230 4 C -0.089 4.089 5 C -0.001 4.001 6 N -0.378 5.378 7 C 0.276 3.724 8 O -0.387 6.387 9 C -0.041 4.041 10 N -0.128 5.128 11 C -0.094 4.094 12 N -0.208 5.208 13 C -0.176 4.176 14 C -0.127 4.127 15 C -0.136 4.136 16 C -0.091 4.091 17 C 0.238 3.762 18 O -0.437 6.437 19 N -0.233 5.233 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.220 0.780 41 H 0.186 0.814 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.777 7.142 26.309 28.639 hybrid contribution -2.273 1.938 -1.453 3.322 sum -11.050 9.080 24.856 28.677 Atomic orbital electron populations 1.22457 0.98862 1.02490 1.01451 1.22298 0.91930 0.89678 1.04330 1.61650 1.59213 1.02137 1.00032 1.22281 0.97667 0.98612 0.90302 1.21377 1.00401 0.96012 0.82330 1.45861 1.49265 1.36653 1.05985 1.20688 0.82203 0.85052 0.84498 1.90839 1.33622 1.28591 1.85680 1.21648 1.00753 0.99115 0.82609 1.44855 1.15454 1.32545 1.19989 1.24875 1.01089 0.93675 0.89726 1.70264 1.03144 1.24175 1.23207 1.22027 0.98629 0.98238 0.98678 1.21236 0.88526 1.04637 0.98326 1.20221 0.96770 0.95946 1.00621 1.21957 0.98002 0.98942 0.90232 1.19616 0.87402 0.86171 0.83043 1.90570 1.33503 1.36021 1.83560 1.42214 1.33046 1.41552 1.06447 1.19423 1.14951 1.24751 0.84164 0.86272 1.25034 0.97842 0.97992 0.95318 1.69618 1.39484 1.43331 0.99695 0.86679 0.81981 0.81998 0.78724 1.19638 1.20208 1.19625 0.92335 0.91926 0.92904 0.88620 0.90749 0.93828 0.90265 0.90030 0.90945 0.76552 0.85700 0.86167 0.78048 0.81415 0.90951 0.89751 0.91908 0.92749 0.89276 0.79833 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 9.27 37.16 0.34 -1.82 16 2 C 0.05 0.64 5.52 -3.83 -0.02 0.62 16 3 N -0.51 -7.17 4.31 -236.07 -1.02 -8.19 16 4 C 0.04 0.38 4.81 -3.83 -0.02 0.36 16 5 C 0.12 1.19 5.60 -4.04 -0.02 1.16 16 6 N -0.72 -4.65 5.56 -60.30 -0.33 -4.99 16 7 C 0.49 4.10 7.90 -10.99 -0.09 4.01 16 8 O -0.51 -7.15 16.43 5.56 0.09 -7.06 16 9 C 0.09 0.40 6.27 -5.20 -0.03 0.37 16 10 N -0.44 -3.74 2.24 -115.28 -0.26 -4.00 16 11 C 0.19 1.79 12.56 -90.38 -1.13 0.66 16 12 N -0.49 -5.99 11.25 -14.67 -0.17 -6.16 16 13 C -0.03 -0.31 11.79 -17.81 -0.21 -0.52 16 14 C -0.01 -0.13 6.95 -81.60 -0.57 -0.70 16 15 C -0.08 -0.51 10.08 36.01 0.36 -0.14 16 16 C 0.04 0.61 5.34 -4.97 -0.03 0.58 16 17 C 0.45 9.84 7.36 -10.98 -0.08 9.76 16 18 O -0.56 -14.50 14.70 5.55 0.08 -14.41 16 19 N -0.59 -13.64 5.09 -10.96 -0.06 -13.69 16 20 C -0.30 -8.43 10.16 -14.94 -0.15 -8.59 16 21 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.44 13.96 55.50 0.77 -24.67 16 24 Si 0.88 18.89 27.74 -169.99 -4.71 14.17 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 28 H 0.06 0.69 6.29 -51.93 -0.33 0.36 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.49 6.26 -51.93 -0.33 0.16 16 31 H 0.10 1.70 6.54 -51.93 -0.34 1.36 16 32 H 0.07 0.98 6.51 -51.93 -0.34 0.64 16 33 H 0.04 0.34 5.98 -51.93 -0.31 0.03 16 34 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.81 6.57 -51.93 -0.34 0.47 16 37 H 0.40 1.11 8.47 -40.82 -0.35 0.76 16 38 H 0.13 0.16 8.13 -51.92 -0.42 -0.26 16 39 H 0.12 0.26 8.02 -51.93 -0.42 -0.16 16 40 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.43 7.96 -51.93 -0.41 0.02 16 45 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 46 H 0.09 1.15 7.81 -51.93 -0.41 0.75 16 47 H 0.37 7.40 5.76 -40.82 -0.24 7.16 16 48 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -38.71 393.62 -8.44 -47.14 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.03 Total: 9.16 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -1.74 Total: 6.76 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -1.06 Total: -61.70 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: 0.17 Total: -21.48 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.17 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.71 -8.44 -47.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714588384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.075 kcal (2) G-P(sol) polarization free energy of solvation -38.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds