Wall clock time and date at job start Tue Mar 31 2020 20:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47225 * 2 1 4 4 C 1.46896 * 111.00072 * 59.18248 * 3 2 1 5 5 C 1.52999 * 109.47335 * 66.04589 * 4 3 2 6 6 N 1.46501 * 109.47183 * 179.97438 * 5 4 3 7 7 C 1.34772 * 119.99943 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00194 * 180.02562 * 7 6 5 10 10 N 1.46498 * 109.47587 * 179.97438 * 9 7 6 11 11 C 1.35035 * 126.40133 * 265.03197 * 10 9 7 12 12 N 1.30500 * 108.70247 * 180.20644 * 11 10 9 13 13 C 1.34128 * 109.25391 * 359.62261 * 12 11 10 14 14 C 1.34669 * 108.02009 * 0.37443 * 13 12 11 15 15 C 1.50700 * 126.59180 * 179.81025 * 14 13 12 16 16 C 1.46901 * 110.99830 * 295.22813 * 3 2 1 17 17 C 1.50707 * 109.46897 * 288.23817 * 16 3 2 18 18 O 1.21287 * 120.00188 * 354.30126 * 17 16 3 19 19 N 1.34777 * 119.99833 * 174.30025 * 17 16 3 20 20 C 1.37092 * 120.00360 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99470 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00633 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00082 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99629 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47054 * 89.99825 * 24 22 20 26 26 H 1.48498 * 109.47360 * 209.99714 * 24 22 20 27 27 H 1.48506 * 109.47267 * 329.99993 * 24 22 20 28 28 H 1.09000 * 109.47102 * 59.98568 * 1 2 3 29 29 H 1.08993 * 109.47280 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46956 * 299.99045 * 1 2 3 31 31 H 1.08998 * 109.47121 * 239.99912 * 2 1 3 32 32 H 1.09005 * 109.47181 * 119.99885 * 2 1 3 33 33 H 1.09001 * 109.46921 * 306.04488 * 4 3 2 34 34 H 1.09006 * 109.46891 * 186.04721 * 4 3 2 35 35 H 1.09001 * 109.46686 * 60.00194 * 5 4 3 36 36 H 1.08993 * 109.47215 * 300.00205 * 5 4 3 37 37 H 0.97000 * 119.99709 * 359.97438 * 6 5 4 38 38 H 1.09007 * 109.47099 * 59.99733 * 9 7 6 39 39 H 1.09000 * 109.46973 * 300.00585 * 9 7 6 40 40 H 1.07997 * 125.65233 * 359.93649 * 11 10 9 41 41 H 1.08005 * 125.99344 * 180.11539 * 13 12 11 42 42 H 1.09000 * 109.47477 * 269.96008 * 15 14 13 43 43 H 1.09000 * 109.46918 * 29.96168 * 15 14 13 44 44 H 1.09000 * 109.46890 * 149.95711 * 15 14 13 45 45 H 1.09000 * 109.47439 * 48.23494 * 16 3 2 46 46 H 1.08995 * 109.47278 * 168.24098 * 16 3 2 47 47 H 0.97010 * 120.00031 * 359.97438 * 19 17 16 48 48 H 0.97001 * 119.99696 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5328 2.1155 1.1778 5 6 2.1474 1.5122 2.4423 6 7 1.6623 2.2411 3.6168 7 6 2.0735 1.8832 4.8493 8 8 2.8456 0.9580 4.9861 9 6 1.5741 2.6327 6.0576 10 7 2.1627 2.0551 7.2684 11 6 1.6031 1.1173 8.0626 12 7 2.4225 0.8573 9.0445 13 6 3.5270 1.6061 8.9088 14 6 3.3831 2.3648 7.8055 15 6 4.3752 3.3624 7.2656 16 6 1.6440 2.0761 -1.2406 17 6 2.4641 1.5367 -2.3842 18 8 3.3516 0.7382 -2.1703 19 7 2.2113 1.9417 -3.6446 20 6 2.9569 1.4507 -4.6850 21 1 3.7467 0.7390 -4.4946 22 6 2.6960 1.8678 -5.9845 23 7 3.4110 1.3975 -6.9816 24 14 1.3296 3.0983 -6.3138 25 1 1.8778 4.4768 -6.2460 26 1 0.7614 2.8574 -7.6645 27 1 0.2632 2.9389 -5.2926 28 1 -0.3633 0.5141 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.4467 2.0388 1.2295 34 1 1.8196 3.1642 1.0990 35 1 3.2335 1.5889 2.3905 36 1 1.8606 0.4636 2.5210 37 1 1.0457 2.9819 3.5073 38 1 0.4880 2.5556 6.1096 39 1 1.8604 3.6814 5.9785 40 1 0.6356 0.6614 7.9129 41 1 4.3803 1.6044 9.5709 42 1 4.1782 4.3424 7.7000 43 1 5.3857 3.0465 7.5248 44 1 4.2793 3.4196 6.1813 45 1 0.5858 1.9106 -1.4427 46 1 1.8304 3.1445 -1.1321 47 1 1.5012 2.5802 -3.8157 48 1 3.2291 1.6890 -7.8887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714588384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:16 Heat of formation + Delta-G solvation = -19.582148 kcal Electronic energy + Delta-G solvation = -28509.487655 eV Core-core repulsion = 24407.166048 eV Total energy + Delta-G solvation = -4102.321607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.09057 -40.87284 -40.45362 -38.68299 -36.06440 -35.72591 -35.02636 -33.73377 -32.84979 -31.59376 -31.08664 -28.88626 -27.47936 -27.32152 -25.78705 -24.67523 -22.47600 -22.13226 -21.72301 -21.09601 -20.67223 -19.97319 -18.53766 -18.20555 -17.69137 -17.32071 -17.12545 -16.77431 -16.62354 -16.18074 -15.92478 -15.55696 -15.28130 -15.09578 -14.86931 -14.69465 -14.55658 -14.49866 -14.20349 -14.02505 -13.92317 -13.61109 -13.60852 -13.26709 -13.17988 -13.09343 -12.99990 -12.77572 -12.50761 -12.39948 -12.13694 -11.96988 -11.67937 -11.51345 -11.42104 -10.94045 -10.48243 -10.38096 -10.21874 -10.19004 -9.22872 -9.15113 -8.39405 -6.00286 0.96444 1.30271 1.37143 1.45379 1.45760 1.68071 2.00648 2.10787 2.23202 2.24774 2.75721 3.16756 3.28334 3.63775 3.79451 3.81511 3.85144 3.90989 4.02283 4.10170 4.15744 4.20319 4.26097 4.30680 4.40344 4.43439 4.52696 4.55838 4.58940 4.73417 4.84979 4.85394 4.88047 5.01703 5.03219 5.12483 5.29810 5.34030 5.40449 5.54965 5.81315 5.90777 6.02385 6.18507 6.20958 6.48087 6.62638 6.91754 7.11824 7.15423 7.43385 8.02541 8.78565 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028098 B = 0.001753 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.263676 B =15973.307283 C =16140.709395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.048 3.952 3 N -0.538 5.538 4 C 0.049 3.951 5 C 0.130 3.870 6 N -0.703 5.703 7 C 0.492 3.508 8 O -0.578 6.578 9 C 0.089 3.911 10 N -0.446 5.446 11 C 0.182 3.818 12 N -0.536 5.536 13 C -0.063 4.063 14 C -0.017 4.017 15 C -0.074 4.074 16 C 0.054 3.946 17 C 0.450 3.550 18 O -0.609 6.609 19 N -0.593 5.593 20 C -0.327 4.327 21 H 0.051 0.949 22 C -0.018 4.018 23 N -0.938 5.938 24 Si 0.967 3.033 25 H -0.256 1.256 26 H -0.278 1.278 27 H -0.228 1.228 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.424 0.576 38 H 0.170 0.830 39 H 0.155 0.845 40 H 0.232 0.768 41 H 0.174 0.826 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.126 0.874 47 H 0.389 0.611 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.754 12.948 26.939 33.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.080 4.080 3 N -0.262 5.262 4 C -0.079 4.079 5 C 0.006 3.994 6 N -0.357 5.357 7 C 0.278 3.722 8 O -0.457 6.457 9 C -0.037 4.037 10 N -0.129 5.129 11 C -0.100 4.100 12 N -0.254 5.254 13 C -0.209 4.209 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.076 4.076 17 C 0.237 3.763 18 O -0.493 6.493 19 N -0.236 5.236 20 C -0.456 4.456 21 H 0.069 0.931 22 C -0.217 4.217 23 N -0.579 5.579 24 Si 0.787 3.213 25 H -0.181 1.181 26 H -0.203 1.203 27 H -0.151 1.151 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.263 0.737 38 H 0.187 0.813 39 H 0.172 0.828 40 H 0.248 0.752 41 H 0.191 0.809 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.144 0.856 47 H 0.225 0.775 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.232 11.228 27.509 32.526 hybrid contribution -0.763 0.565 -1.768 2.007 sum -13.995 11.792 25.741 31.584 Atomic orbital electron populations 1.22357 0.95969 1.03195 1.02667 1.22115 0.94236 0.89764 1.01866 1.61476 1.61016 1.02417 1.01284 1.22309 0.99205 0.98837 0.87522 1.21062 0.98632 0.95750 0.83998 1.45590 1.48932 1.36643 1.04535 1.21370 0.80972 0.84199 0.85704 1.90830 1.36644 1.31637 1.86600 1.22026 1.02899 0.99627 0.79119 1.45045 1.15053 1.32133 1.20682 1.25469 1.01759 0.93550 0.89270 1.70193 1.04314 1.25635 1.25251 1.22332 0.99078 0.99355 1.00178 1.21652 0.89270 1.04440 0.97811 1.20282 0.96086 0.96381 1.00408 1.21865 0.97884 1.00221 0.87664 1.21051 0.86703 0.84381 0.84133 1.90554 1.36015 1.38148 1.84575 1.42029 1.33356 1.42285 1.05912 1.18974 1.15071 1.25001 0.86564 0.93062 1.26156 1.01147 1.00299 0.94054 1.69817 1.42075 1.45455 1.00503 0.85339 0.78298 0.78303 0.79376 1.18055 1.20310 1.15120 0.92453 0.91708 0.89987 0.93682 0.90777 0.90693 0.87961 0.93349 0.92728 0.73750 0.81299 0.82789 0.75184 0.80910 0.88557 0.89768 0.92077 0.89563 0.85635 0.77493 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.54 9.27 71.98 0.67 -2.87 16 2 C 0.05 1.33 5.52 86.30 0.48 1.81 16 3 N -0.54 -14.14 4.31 -900.79 -3.88 -18.02 16 4 C 0.05 0.71 4.81 86.30 0.41 1.13 16 5 C 0.13 2.27 5.60 86.38 0.48 2.76 16 6 N -0.70 -6.46 5.56 -463.08 -2.57 -9.03 16 7 C 0.49 6.92 7.90 87.66 0.69 7.62 16 8 O -0.58 -15.94 16.43 -3.02 -0.05 -15.99 16 9 C 0.09 0.46 6.27 85.63 0.54 1.00 16 10 N -0.45 -6.58 2.24 -518.62 -1.16 -7.74 16 11 C 0.18 3.23 12.56 180.26 2.26 5.50 16 12 N -0.54 -13.23 11.25 -200.32 -2.25 -15.48 16 13 C -0.06 -1.40 11.79 83.52 0.98 -0.42 16 14 C -0.02 -0.30 6.95 40.95 0.28 -0.02 16 15 C -0.07 -0.85 10.08 71.24 0.72 -0.13 16 16 C 0.05 1.48 5.34 85.56 0.46 1.93 16 17 C 0.45 19.58 7.36 87.66 0.65 20.22 16 18 O -0.61 -33.58 14.70 -3.05 -0.04 -33.63 16 19 N -0.59 -27.09 5.09 -306.98 -1.56 -28.65 16 20 C -0.33 -18.96 10.16 84.04 0.85 -18.11 16 21 H 0.05 3.59 7.39 -2.91 -0.02 3.56 16 22 C -0.02 -1.01 5.50 84.93 0.47 -0.55 16 23 N -0.94 -56.42 13.96 21.66 0.30 -56.12 16 24 Si 0.97 37.65 27.74 68.60 1.90 39.55 16 25 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 26 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.23 -7.25 6.52 99.48 0.65 -6.60 16 28 H 0.06 1.13 6.29 -2.39 -0.02 1.11 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.11 6.26 -2.38 -0.01 1.09 16 31 H 0.04 1.69 6.54 -2.39 -0.02 1.68 16 32 H 0.07 1.99 6.51 -2.38 -0.02 1.98 16 33 H 0.08 0.69 5.98 -2.39 -0.01 0.68 16 34 H 0.10 1.10 7.86 -2.38 -0.02 1.08 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.17 6.57 -2.39 -0.02 1.15 16 37 H 0.42 -0.04 8.47 -92.71 -0.79 -0.83 16 38 H 0.17 -0.56 8.13 -2.38 -0.02 -0.58 16 39 H 0.15 -0.17 8.02 -2.39 -0.02 -0.18 16 40 H 0.23 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 42 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 0.73 7.96 -2.39 -0.02 0.71 16 45 H 0.09 1.85 5.97 -2.39 -0.01 1.84 16 46 H 0.13 2.56 7.81 -2.39 -0.02 2.54 16 47 H 0.39 14.37 5.76 -92.70 -0.53 13.84 16 48 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -97.43 393.62 0.25 -97.18 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.37 Total: 28.06 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 9.95 Total: 19.87 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -11.13 Total: -135.04 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -0.09 Total: -49.62 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 1.90 Total: 39.55 kcal Total: -97.43 0.25 -97.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714588384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.597 kcal (2) G-P(sol) polarization free energy of solvation -97.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds