Wall clock time and date at job start Tue Mar 31 2020 21:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37359 * 125.83074 * 2 1 4 4 N 1.29404 * 108.82513 * 179.77310 * 3 2 1 5 5 N 1.40167 * 108.14302 * 0.38601 * 4 3 2 6 6 C 1.46498 * 126.35435 * 179.88115 * 5 4 3 7 7 C 1.50705 * 109.46872 * 269.68891 * 6 5 4 8 8 O 1.21287 * 119.99862 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99871 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99623 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46704 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47070 * 180.02562 * 11 10 9 13 13 C 1.53349 * 109.42091 * 295.13062 * 12 11 10 14 14 C 1.53196 * 109.15353 * 178.67328 * 13 12 11 15 15 N 1.46928 * 108.89135 * 54.57497 * 14 13 12 16 16 C 1.36936 * 120.63013 * 126.29699 * 15 14 13 17 17 H 1.07999 * 120.00022 * 331.83633 * 16 15 14 18 18 C 1.38813 * 120.00005 * 151.82709 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.09585 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.09475 * 18 16 15 21 21 H 1.48494 * 109.47083 * 60.00061 * 20 18 16 22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47024 * 300.00112 * 20 18 16 24 24 C 1.46924 * 118.73859 * 306.32337 * 15 14 13 25 25 C 1.53044 * 109.46279 * 175.00212 * 12 11 10 26 26 C 1.34818 * 125.83257 * 180.02562 * 2 1 3 27 27 O 1.21815 * 126.29757 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47053 * 269.97896 * 1 2 3 29 29 H 1.09006 * 109.47250 * 29.97339 * 1 2 3 30 30 H 1.08994 * 109.47070 * 149.97585 * 1 2 3 31 31 H 1.08003 * 125.58829 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47515 * 149.68513 * 6 5 4 33 33 H 1.08997 * 109.46868 * 29.68134 * 6 5 4 34 34 H 0.96999 * 119.99865 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.46866 * 60.00504 * 10 9 7 36 36 H 1.08997 * 109.47192 * 299.99739 * 10 9 7 37 37 H 1.08996 * 109.47095 * 60.00212 * 11 10 9 38 38 H 1.08998 * 109.47427 * 300.00388 * 11 10 9 39 39 H 1.09003 * 109.46065 * 55.03141 * 12 11 10 40 40 H 1.08998 * 109.68701 * 58.70817 * 13 12 11 41 41 H 1.09000 * 109.47234 * 298.50885 * 13 12 11 42 42 H 1.08996 * 109.58345 * 294.72319 * 14 13 12 43 43 H 1.08994 * 109.58644 * 174.43734 * 14 13 12 44 44 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.58664 * 173.39523 * 24 15 14 46 46 H 1.08996 * 109.58580 * 293.67452 * 24 15 14 47 47 H 1.08992 * 109.49619 * 61.43154 * 25 12 11 48 48 H 1.08999 * 109.52313 * 301.35168 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7352 0.0049 5 7 3.5344 -0.6662 -0.0008 6 6 4.7313 -1.5110 -0.0005 7 6 5.1416 -1.8011 -1.4213 8 8 4.4974 -1.3473 -2.3433 9 7 6.2245 -2.5649 -1.6674 10 6 6.6230 -2.8474 -3.0486 11 6 7.8738 -3.7285 -3.0483 12 6 8.2904 -4.0231 -4.4907 13 6 7.2017 -4.8583 -5.1754 14 6 7.6096 -5.1214 -6.6285 15 7 8.9438 -5.7367 -6.6441 16 6 9.1600 -6.9171 -7.3036 17 1 8.3535 -7.6258 -7.4209 18 6 10.4158 -7.2029 -7.8215 19 7 11.2968 -6.2382 -7.9815 20 14 10.8554 -8.9566 -8.2913 21 1 9.9179 -9.4387 -9.3371 22 1 12.2444 -8.9953 -8.8151 23 1 10.7536 -9.8300 -7.0946 24 6 10.0413 -5.0615 -5.9383 25 6 9.6097 -4.7987 -4.4921 26 6 2.2543 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0006 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 1.9250 2.1374 0.0004 32 1 4.5150 -2.4474 0.5137 33 1 5.5413 -0.9932 0.5130 34 1 6.7399 -2.9275 -0.9300 35 1 6.8387 -1.9111 -3.5632 36 1 5.8130 -3.3658 -3.5616 37 1 7.6585 -4.6648 -2.5335 38 1 8.6836 -3.2098 -2.5353 39 1 8.4203 -3.0848 -5.0300 40 1 6.2562 -4.3164 -5.1555 41 1 7.0887 -5.8075 -4.6517 42 1 7.6350 -4.1799 -7.1770 43 1 6.8906 -5.7960 -7.0933 44 1 12.1744 -6.4380 -8.3431 45 1 10.9264 -5.6977 -5.9455 46 1 10.2667 -4.1164 -6.4322 47 1 9.4740 -5.7483 -3.9746 48 1 10.3766 -4.2139 -3.9842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715201350.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:00 Heat of formation + Delta-G solvation = 27.384028 kcal Electronic energy + Delta-G solvation = -28672.197567 eV Core-core repulsion = 24571.912566 eV Total energy + Delta-G solvation = -4100.285001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.74594 -39.82990 -37.97707 -37.54472 -35.77110 -35.28329 -33.58001 -32.29758 -31.24404 -30.00094 -29.15796 -28.22884 -27.09906 -25.02865 -23.37165 -22.87364 -22.03656 -21.65077 -20.96512 -20.41775 -19.04793 -18.09254 -17.78419 -16.76301 -16.60810 -16.52959 -16.19859 -15.73151 -15.53778 -14.89072 -14.74540 -14.40766 -14.27015 -13.85120 -13.61725 -13.46077 -13.37345 -13.20867 -12.85389 -12.81850 -12.73986 -12.40308 -12.24513 -12.15921 -11.55821 -11.31253 -11.18876 -10.89751 -10.84119 -10.67264 -10.59887 -10.43495 -10.18886 -10.12992 -9.98968 -9.81635 -9.43270 -9.37038 -9.15404 -8.88930 -8.42185 -6.60954 -5.74505 -3.16557 1.30000 1.60594 2.34314 2.37802 2.69384 3.08039 3.40834 3.46126 3.47732 4.01412 4.33540 4.44359 4.52550 4.53371 4.70644 4.76271 4.94582 4.96719 5.05327 5.07157 5.31174 5.41705 5.44456 5.49299 5.63064 5.67987 5.77494 5.82573 6.03687 6.05781 6.12936 6.14739 6.24784 6.33940 6.41608 6.59907 6.68118 6.75268 6.87266 6.90920 7.06792 7.23970 7.25764 7.42902 7.70560 7.70863 7.83414 7.98559 8.50286 9.26536 9.90310 10.47664 11.33957 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031496 B = 0.001724 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.801338 B =16238.337987 C =16567.526857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.562 5.562 3 C 0.257 3.743 4 N -0.274 5.274 5 N -0.438 5.438 6 C 0.144 3.856 7 C 0.493 3.507 8 O -0.526 6.526 9 N -0.725 5.725 10 C 0.118 3.882 11 C -0.125 4.125 12 C -0.075 4.075 13 C -0.130 4.130 14 C 0.144 3.856 15 N -0.592 5.592 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.170 3.830 25 C -0.134 4.134 26 C 0.652 3.348 27 O -0.551 6.551 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.232 0.768 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.401 0.599 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.016 0.984 43 H 0.051 0.949 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.016 0.984 47 H 0.054 0.946 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.726 16.438 21.903 32.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.291 5.291 3 C -0.043 4.043 4 N -0.095 5.095 5 N -0.258 5.258 6 C 0.018 3.982 7 C 0.277 3.723 8 O -0.401 6.401 9 N -0.378 5.378 10 C -0.005 4.005 11 C -0.163 4.163 12 C -0.094 4.094 13 C -0.169 4.169 14 C 0.018 3.982 15 N -0.315 5.315 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.198 4.198 19 N -0.549 5.549 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.044 3.956 25 C -0.173 4.173 26 C 0.352 3.648 27 O -0.424 6.424 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.248 0.752 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.035 0.965 47 H 0.073 0.927 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.281 16.159 21.127 31.185 hybrid contribution -0.172 -1.155 -0.011 1.168 sum -16.452 15.004 21.116 30.687 Atomic orbital electron populations 1.21837 0.74019 1.04940 1.03481 1.45858 1.08924 1.06603 1.67676 1.25932 0.85739 0.94790 0.97803 1.76989 1.18314 0.91359 1.22830 1.48155 1.05421 1.03205 1.69026 1.21214 0.85920 0.95443 0.95636 1.20886 0.80922 0.78943 0.91544 1.90750 1.52867 1.50689 1.45819 1.45997 1.29341 1.52485 1.09948 1.21566 0.97694 0.99827 0.81389 1.21909 0.95840 0.99175 0.99341 1.21026 0.96528 0.98967 0.92862 1.22178 0.96497 0.99107 0.99161 1.20894 0.88627 0.96019 0.92661 1.44040 1.04219 1.24319 1.58955 1.19152 0.96481 0.93312 1.29099 0.91847 1.25041 0.98449 0.97467 0.98799 1.70026 1.06758 1.30080 1.47998 0.86375 0.77273 0.84871 0.78291 1.20918 1.21659 1.21094 1.20761 0.92264 0.96193 0.86333 1.22212 0.94989 0.98740 1.01351 1.16651 0.81911 0.85116 0.81171 1.91098 1.77598 1.15267 1.58426 0.90808 0.89221 0.89348 0.75193 0.85714 0.85620 0.76500 0.91457 0.90949 0.91481 0.91681 0.91708 0.93091 0.92413 0.96614 0.93020 0.93655 0.89619 0.96544 0.92750 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.40 11.05 59.85 0.66 1.06 16 2 N -0.56 -4.54 3.14 -130.10 -0.41 -4.95 16 3 C 0.26 1.57 12.66 -89.12 -1.13 0.44 16 4 N -0.27 -2.65 12.53 29.87 0.37 -2.27 16 5 N -0.44 -4.94 3.11 -66.31 -0.21 -5.15 16 6 C 0.14 1.27 6.87 -5.19 -0.04 1.23 16 7 C 0.49 6.03 7.90 -10.98 -0.09 5.94 16 8 O -0.53 -9.03 16.43 5.55 0.09 -8.94 16 9 N -0.73 -7.32 5.56 -60.29 -0.33 -7.65 16 10 C 0.12 1.46 5.43 -4.04 -0.02 1.44 16 11 C -0.12 -1.52 4.80 -26.73 -0.13 -1.65 16 12 C -0.07 -1.20 2.15 -90.42 -0.19 -1.40 16 13 C -0.13 -2.29 5.16 -26.45 -0.14 -2.43 16 14 C 0.14 3.13 6.51 -3.71 -0.02 3.10 16 15 N -0.59 -15.13 2.99 -172.32 -0.52 -15.64 16 16 C -0.25 -7.02 9.58 -15.06 -0.14 -7.16 16 17 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 18 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 19 N -0.90 -26.57 11.20 55.49 0.62 -25.95 16 20 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 25 C -0.13 -2.48 5.36 -26.61 -0.14 -2.63 16 26 C 0.65 8.16 8.60 -86.73 -0.75 7.42 16 27 O -0.55 -8.73 17.71 5.09 0.09 -8.64 16 28 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 30 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.23 0.08 8.06 -52.48 -0.42 -0.34 16 32 H 0.13 0.88 8.11 -51.93 -0.42 0.46 16 33 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 2.63 8.47 -40.82 -0.35 2.28 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.81 6.52 -51.93 -0.34 0.47 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -39.74 393.53 -9.26 -48.99 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.64 Total: -2.07 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -2.23 Total: 9.39 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -0.47 Total: -61.62 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.18 Total: -17.57 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.74 -9.26 -48.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715201350.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.379 kcal (2) G-P(sol) polarization free energy of solvation -39.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds