Wall clock time and date at job start Tue Mar 31 2020 21:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37359 * 125.83074 * 2 1 4 4 N 1.29404 * 108.82513 * 179.77310 * 3 2 1 5 5 N 1.40167 * 108.14302 * 0.38601 * 4 3 2 6 6 C 1.46498 * 126.35435 * 179.88115 * 5 4 3 7 7 C 1.50705 * 109.46872 * 269.68891 * 6 5 4 8 8 O 1.21287 * 119.99862 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99871 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99623 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46704 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47070 * 180.02562 * 11 10 9 13 13 C 1.53349 * 109.42091 * 295.13062 * 12 11 10 14 14 C 1.53196 * 109.15353 * 178.67328 * 13 12 11 15 15 N 1.46928 * 108.89135 * 54.57497 * 14 13 12 16 16 C 1.36936 * 120.63013 * 126.29699 * 15 14 13 17 17 H 1.07999 * 120.00022 * 331.83633 * 16 15 14 18 18 C 1.38813 * 120.00005 * 151.82709 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.09585 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.09475 * 18 16 15 21 21 H 1.48494 * 109.47083 * 60.00061 * 20 18 16 22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47024 * 300.00112 * 20 18 16 24 24 C 1.46924 * 118.73859 * 306.32337 * 15 14 13 25 25 C 1.53044 * 109.46279 * 175.00212 * 12 11 10 26 26 C 1.34818 * 125.83257 * 180.02562 * 2 1 3 27 27 O 1.21815 * 126.29757 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47053 * 269.97896 * 1 2 3 29 29 H 1.09006 * 109.47250 * 29.97339 * 1 2 3 30 30 H 1.08994 * 109.47070 * 149.97585 * 1 2 3 31 31 H 1.08003 * 125.58829 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47515 * 149.68513 * 6 5 4 33 33 H 1.08997 * 109.46868 * 29.68134 * 6 5 4 34 34 H 0.96999 * 119.99865 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.46866 * 60.00504 * 10 9 7 36 36 H 1.08997 * 109.47192 * 299.99739 * 10 9 7 37 37 H 1.08996 * 109.47095 * 60.00212 * 11 10 9 38 38 H 1.08998 * 109.47427 * 300.00388 * 11 10 9 39 39 H 1.09003 * 109.46065 * 55.03141 * 12 11 10 40 40 H 1.08998 * 109.68701 * 58.70817 * 13 12 11 41 41 H 1.09000 * 109.47234 * 298.50885 * 13 12 11 42 42 H 1.08996 * 109.58345 * 294.72319 * 14 13 12 43 43 H 1.08994 * 109.58644 * 174.43734 * 14 13 12 44 44 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.58664 * 173.39523 * 24 15 14 46 46 H 1.08996 * 109.58580 * 293.67452 * 24 15 14 47 47 H 1.08992 * 109.49619 * 61.43154 * 25 12 11 48 48 H 1.08999 * 109.52313 * 301.35168 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7352 0.0049 5 7 3.5344 -0.6662 -0.0008 6 6 4.7313 -1.5110 -0.0005 7 6 5.1416 -1.8011 -1.4213 8 8 4.4974 -1.3473 -2.3433 9 7 6.2245 -2.5649 -1.6674 10 6 6.6230 -2.8474 -3.0486 11 6 7.8738 -3.7285 -3.0483 12 6 8.2904 -4.0231 -4.4907 13 6 7.2017 -4.8583 -5.1754 14 6 7.6096 -5.1214 -6.6285 15 7 8.9438 -5.7367 -6.6441 16 6 9.1600 -6.9171 -7.3036 17 1 8.3535 -7.6258 -7.4209 18 6 10.4158 -7.2029 -7.8215 19 7 11.2968 -6.2382 -7.9815 20 14 10.8554 -8.9566 -8.2913 21 1 9.9179 -9.4387 -9.3371 22 1 12.2444 -8.9953 -8.8151 23 1 10.7536 -9.8300 -7.0946 24 6 10.0413 -5.0615 -5.9383 25 6 9.6097 -4.7987 -4.4921 26 6 2.2543 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0006 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 1.9250 2.1374 0.0004 32 1 4.5150 -2.4474 0.5137 33 1 5.5413 -0.9932 0.5130 34 1 6.7399 -2.9275 -0.9300 35 1 6.8387 -1.9111 -3.5632 36 1 5.8130 -3.3658 -3.5616 37 1 7.6585 -4.6648 -2.5335 38 1 8.6836 -3.2098 -2.5353 39 1 8.4203 -3.0848 -5.0300 40 1 6.2562 -4.3164 -5.1555 41 1 7.0887 -5.8075 -4.6517 42 1 7.6350 -4.1799 -7.1770 43 1 6.8906 -5.7960 -7.0933 44 1 12.1744 -6.4380 -8.3431 45 1 10.9264 -5.6977 -5.9455 46 1 10.2667 -4.1164 -6.4322 47 1 9.4740 -5.7483 -3.9746 48 1 10.3766 -4.2139 -3.9842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715201350.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:58 Heat of formation + Delta-G solvation = -0.421158 kcal Electronic energy + Delta-G solvation = -28673.403290 eV Core-core repulsion = 24571.912566 eV Total energy + Delta-G solvation = -4101.490724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.41641 -40.79880 -39.50902 -38.43258 -36.83383 -36.17251 -35.11795 -33.24472 -32.76829 -31.61540 -30.39745 -29.16821 -27.78938 -26.65039 -24.69663 -23.84709 -23.45181 -22.48025 -22.19736 -21.53971 -20.62650 -18.80858 -18.70730 -18.55472 -17.37525 -17.24745 -17.06587 -16.84363 -16.56483 -16.43889 -15.77319 -15.42675 -15.38837 -15.30448 -15.05358 -14.88970 -14.39921 -14.30698 -14.08746 -13.85125 -13.57863 -13.48660 -13.30294 -13.03032 -12.93422 -12.92243 -12.83916 -12.54161 -12.30539 -12.15743 -11.95202 -11.82241 -11.67415 -11.49225 -11.43543 -11.09548 -10.99877 -10.75325 -10.52793 -10.15219 -9.66088 -8.67247 -7.87627 -5.33399 0.66648 1.07977 1.45510 1.47453 1.47748 1.54282 1.54918 2.08628 2.34387 2.50684 3.26114 3.46194 3.64381 3.72593 3.83244 3.91810 4.06885 4.10782 4.13210 4.14795 4.28302 4.40161 4.42719 4.52490 4.57526 4.64066 4.73184 4.76180 4.79126 4.88050 4.88850 4.99051 5.02381 5.04103 5.10181 5.25389 5.34383 5.38065 5.39500 5.46337 5.55561 5.66416 5.66987 5.80938 6.39196 6.45473 6.59711 6.91261 7.14671 7.15177 7.86968 8.38791 9.18251 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031496 B = 0.001724 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.801338 B =16238.337987 C =16567.526857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.560 5.560 3 C 0.278 3.722 4 N -0.311 5.311 5 N -0.446 5.446 6 C 0.142 3.858 7 C 0.490 3.510 8 O -0.583 6.583 9 N -0.708 5.708 10 C 0.124 3.876 11 C -0.107 4.107 12 C -0.070 4.070 13 C -0.118 4.118 14 C 0.138 3.862 15 N -0.611 5.611 16 C -0.265 4.265 17 H 0.063 0.937 18 C -0.052 4.052 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.277 1.277 24 C 0.173 3.827 25 C -0.120 4.120 26 C 0.629 3.371 27 O -0.600 6.600 28 H 0.091 0.909 29 H 0.129 0.871 30 H 0.066 0.934 31 H 0.289 0.711 32 H 0.141 0.859 33 H 0.163 0.837 34 H 0.421 0.579 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.008 0.992 43 H 0.046 0.954 44 H 0.250 0.750 45 H 0.052 0.948 46 H -0.008 1.008 47 H 0.053 0.947 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.593 17.668 24.390 34.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.287 5.287 3 C -0.020 4.020 4 N -0.132 5.132 5 N -0.265 5.265 6 C 0.017 3.983 7 C 0.276 3.724 8 O -0.462 6.462 9 N -0.362 5.362 10 C 0.001 3.999 11 C -0.145 4.145 12 C -0.090 4.090 13 C -0.157 4.157 14 C 0.012 3.988 15 N -0.335 5.335 16 C -0.396 4.396 17 H 0.080 0.920 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.796 3.204 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.203 1.203 24 C 0.048 3.952 25 C -0.159 4.159 26 C 0.328 3.672 27 O -0.478 6.478 28 H 0.110 0.890 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.304 0.696 32 H 0.158 0.842 33 H 0.180 0.820 34 H 0.259 0.741 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.010 0.990 47 H 0.072 0.928 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.152 17.415 23.666 34.023 hybrid contribution 0.025 -1.438 -0.837 1.664 sum -17.127 15.977 22.829 32.707 Atomic orbital electron populations 1.22168 0.71858 1.05833 1.05013 1.46131 1.10231 1.06010 1.66336 1.27115 0.84486 0.96135 0.94255 1.76995 1.20335 0.90271 1.25560 1.48394 1.05459 1.04189 1.68477 1.21467 0.86612 0.96701 0.93524 1.21521 0.80428 0.78037 0.92424 1.90720 1.54716 1.53039 1.47723 1.45801 1.28956 1.51669 1.09766 1.21328 0.97092 0.99074 0.82446 1.21700 0.96314 0.99989 0.96462 1.20940 0.94666 0.97836 0.95531 1.22030 0.97890 0.99665 0.96106 1.21055 0.86970 0.95160 0.95569 1.44326 1.05725 1.24174 1.59264 1.19476 0.96697 0.94367 1.29022 0.91971 1.25820 0.98401 1.01214 0.99263 1.70187 1.06859 1.31938 1.49134 0.85329 0.76688 0.80225 0.78125 1.20282 1.21812 1.20307 1.20632 0.91112 0.93976 0.89502 1.22008 0.96990 0.99570 0.97291 1.17093 0.82949 0.85516 0.81598 1.91034 1.78551 1.17347 1.60822 0.89001 0.85253 0.91507 0.69625 0.84152 0.81984 0.74078 0.92598 0.92887 0.90245 0.89199 0.92309 0.91148 0.92529 0.97435 0.93512 0.94076 0.92989 0.98984 0.92850 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 11.05 127.77 1.41 1.98 16 2 N -0.56 -8.16 3.14 -683.67 -2.15 -10.30 16 3 C 0.28 2.61 12.66 179.82 2.28 4.89 16 4 N -0.31 -5.43 12.53 -59.41 -0.74 -6.17 16 5 N -0.45 -9.67 3.11 -481.78 -1.50 -11.17 16 6 C 0.14 2.30 6.87 85.63 0.59 2.89 16 7 C 0.49 11.50 7.90 87.66 0.69 12.19 16 8 O -0.58 -20.15 16.43 -3.05 -0.05 -20.20 16 9 N -0.71 -12.80 5.56 -463.05 -2.57 -15.38 16 10 C 0.12 2.87 5.43 86.38 0.47 3.34 16 11 C -0.11 -2.28 4.80 30.59 0.15 -2.13 16 12 C -0.07 -2.16 2.15 -10.66 -0.02 -2.18 16 13 C -0.12 -4.04 5.16 30.78 0.16 -3.89 16 14 C 0.14 6.06 6.51 86.36 0.56 6.62 16 15 N -0.61 -31.89 2.99 -699.11 -2.09 -33.99 16 16 C -0.27 -15.14 9.58 84.03 0.81 -14.33 16 17 H 0.06 3.48 7.88 -2.91 -0.02 3.45 16 18 C -0.05 -2.96 4.92 84.86 0.42 -2.55 16 19 N -0.94 -56.57 11.20 21.65 0.24 -56.32 16 20 Si 0.97 45.84 29.59 68.60 2.03 47.87 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 C 0.17 8.51 5.30 86.36 0.46 8.96 16 25 C -0.12 -4.30 5.36 30.67 0.16 -4.13 16 26 C 0.63 15.67 8.60 178.99 1.54 17.21 16 27 O -0.60 -19.64 17.71 -4.72 -0.08 -19.72 16 28 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.13 -0.25 8.14 -2.38 -0.02 -0.27 16 30 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 31 H 0.29 -1.23 8.06 -2.91 -0.02 -1.26 16 32 H 0.14 1.79 8.11 -2.39 -0.02 1.77 16 33 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.42 4.13 8.47 -92.71 -0.79 3.35 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.45 6.54 -2.39 -0.02 1.44 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 2.16 6.52 -2.39 -0.02 2.14 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.05 2.88 6.06 -2.39 -0.01 2.87 16 46 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 47 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -92.52 393.53 2.93 -89.59 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.18 Total: 6.93 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 9.67 Total: 28.86 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -8.81 Total: -133.33 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -0.13 Total: -39.92 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -92.52 2.93 -89.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715201350.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.167 kcal (2) G-P(sol) polarization free energy of solvation -92.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds