Wall clock time and date at job start Tue Mar 31 2020 20:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46870 * 2 1 4 4 C 1.46494 * 120.00432 * 90.14082 * 3 2 1 5 5 C 1.52998 * 109.47475 * 89.99454 * 4 3 2 6 6 N 1.46897 * 109.47250 * 180.02562 * 5 4 3 7 7 C 1.46898 * 111.00024 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47361 * 180.02562 * 7 6 5 9 9 O 1.21291 * 119.99805 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00215 * 180.02562 * 8 7 6 11 11 C 1.37100 * 119.99842 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99976 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99805 * 179.97438 * 11 10 8 14 14 N 1.31419 * 119.99922 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00117 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46951 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47191 * 119.99823 * 15 13 11 18 18 H 1.48493 * 109.47118 * 240.00084 * 15 13 11 19 19 C 1.34779 * 119.99515 * 270.13461 * 3 2 1 20 20 O 1.21678 * 120.00126 * 4.94268 * 19 3 2 21 21 C 1.46770 * 120.00045 * 184.94122 * 19 3 2 22 22 N 1.38145 * 126.84124 * 103.10488 * 21 19 3 23 23 H 0.96998 * 126.47954 * 359.97438 * 22 21 19 24 24 C 1.34495 * 107.05357 * 179.97438 * 22 21 19 25 25 C 1.50696 * 125.42200 * 180.02562 * 24 22 21 26 26 N 1.30865 * 109.16356 * 359.97438 * 24 22 21 27 27 C 1.33317 * 109.68335 * 359.76868 * 26 24 22 28 28 C 1.50695 * 126.10821 * 180.27204 * 27 26 24 29 29 H 1.09000 * 109.47345 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47107 * 300.00393 * 1 2 3 31 31 H 1.09001 * 109.47296 * 60.00363 * 1 2 3 32 32 H 1.08991 * 109.47065 * 239.99960 * 2 1 3 33 33 H 1.08996 * 109.46865 * 119.99476 * 2 1 3 34 34 H 1.09000 * 109.46950 * 210.00097 * 4 3 2 35 35 H 1.09002 * 109.47185 * 329.99662 * 4 3 2 36 36 H 1.08995 * 109.47119 * 300.00124 * 5 4 3 37 37 H 1.09002 * 109.46744 * 59.99938 * 5 4 3 38 38 H 1.00901 * 111.00084 * 56.04931 * 6 5 4 39 39 H 1.09000 * 109.47409 * 299.99987 * 7 6 5 40 40 H 1.08994 * 109.47330 * 60.00139 * 7 6 5 41 41 H 0.96999 * 120.00216 * 359.97438 * 10 8 7 42 42 H 0.97000 * 119.99619 * 179.97438 * 14 13 11 43 43 H 1.09000 * 109.47632 * 89.99257 * 25 24 22 44 44 H 1.09003 * 109.47429 * 209.99959 * 25 24 22 45 45 H 1.09005 * 109.46966 * 329.99397 * 25 24 22 46 46 H 1.09002 * 109.47075 * 270.12271 * 28 27 26 47 47 H 1.08999 * 109.47417 * 30.12370 * 28 27 26 48 48 H 1.08999 * 109.47397 * 150.12376 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2654 2.0709 1.2686 5 6 3.7113 1.8302 1.7069 6 7 3.9589 2.5212 2.9793 7 6 5.3408 2.3124 3.4316 8 6 5.5566 3.0339 4.7369 9 8 4.6484 3.6601 5.2411 10 7 6.7588 2.9834 5.3441 11 6 6.9549 3.6394 6.5319 12 1 6.1462 4.1970 6.9808 13 6 8.1941 3.5869 7.1582 14 7 9.1780 2.9080 6.6122 15 14 8.4616 4.4813 8.7762 16 1 7.2062 5.1659 9.1768 17 1 8.8476 3.5030 9.8246 18 1 9.5435 5.4854 8.6137 19 6 2.2402 2.0174 -1.1673 20 8 1.9506 1.4781 -2.2188 21 6 2.8313 3.3609 -1.1700 22 7 4.1388 3.6900 -1.4709 23 1 4.8453 3.0745 -1.7216 24 6 4.2471 5.0251 -1.3505 25 6 5.5028 5.8243 -1.5864 26 7 3.0884 5.5201 -0.9971 27 6 2.1962 4.5362 -0.8818 28 6 0.7470 4.6919 -0.4991 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5137 0.8900 34 1 2.0980 3.1402 1.1394 35 1 1.5863 1.6862 2.0296 36 1 3.8786 0.7609 1.8360 37 1 4.3904 2.2148 0.9459 38 1 3.2992 2.2282 3.6843 39 1 5.5200 1.2464 3.5722 40 1 6.0309 2.7011 2.6828 41 1 7.4850 2.4823 4.9412 42 1 10.0433 2.8717 7.0492 43 1 5.5499 6.1268 -2.6325 44 1 5.4940 6.7106 -0.9519 45 1 6.3729 5.2135 -1.3453 46 1 0.6477 4.6211 0.5841 47 1 0.3850 5.6637 -0.8344 48 1 0.1601 3.9033 -0.9700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715757365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:14 Heat of formation + Delta-G solvation = -16.917171 kcal Electronic energy + Delta-G solvation = -29511.799119 eV Core-core repulsion = 25409.593074 eV Total energy + Delta-G solvation = -4102.206045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.43579 -39.92168 -38.36079 -36.79372 -35.11450 -33.87411 -33.64596 -32.59550 -31.43198 -31.20578 -29.37113 -29.12677 -26.77574 -26.03452 -24.08021 -23.72552 -22.50429 -21.43765 -20.97017 -19.52804 -19.19795 -18.03794 -17.80431 -17.15683 -16.59224 -16.25381 -15.62728 -15.50465 -15.08882 -14.66104 -14.57715 -14.26223 -14.06648 -13.94609 -13.82809 -13.45886 -13.44316 -13.26473 -13.16242 -12.83186 -12.68296 -12.60721 -12.35648 -12.27381 -12.20612 -12.08851 -11.64314 -11.54536 -11.35790 -11.28214 -11.07032 -10.68389 -10.36854 -10.26037 -10.08845 -9.99517 -9.55697 -9.11929 -8.52795 -8.40967 -8.16855 -8.00301 -6.45589 -3.86417 1.49993 1.94718 2.54902 2.86773 3.06308 3.13860 3.24884 3.32217 3.85563 3.99643 4.12854 4.22852 4.45468 4.67038 4.73392 4.80527 4.85571 4.91413 5.01978 5.08857 5.11012 5.19294 5.21312 5.27292 5.28264 5.36787 5.52770 5.55843 5.57290 5.61063 5.69321 5.71348 5.75095 5.82594 5.86951 5.87947 5.91314 6.18004 6.20773 6.45943 6.92207 7.06585 7.07984 7.52046 7.52928 7.73197 7.85817 8.02374 8.56740 9.14128 9.49714 10.00811 10.72180 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.002601 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.131240 B =10760.672928 C =11937.522900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.597 5.597 4 C 0.105 3.895 5 C 0.048 3.952 6 N -0.663 5.663 7 C 0.054 3.946 8 C 0.441 3.559 9 O -0.581 6.581 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.929 3.071 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.601 3.399 20 O -0.528 6.528 21 C -0.079 4.079 22 N -0.540 5.540 23 H 0.421 0.579 24 C 0.237 3.763 25 C -0.073 4.073 26 N -0.483 5.483 27 C 0.065 3.935 28 C -0.077 4.077 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.029 0.971 37 H 0.065 0.935 38 H 0.351 0.649 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 -4.346 -17.080 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.329 5.329 4 C -0.018 4.018 5 C -0.083 4.083 6 N -0.296 5.296 7 C -0.079 4.079 8 C 0.226 3.774 9 O -0.465 6.465 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.386 3.614 20 O -0.404 6.404 21 C -0.196 4.196 22 N -0.144 5.144 23 H 0.260 0.740 24 C -0.027 4.027 25 C -0.131 4.131 26 N -0.204 5.204 27 C -0.068 4.068 28 C -0.134 4.134 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.170 0.830 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.330 -2.826 -17.379 20.937 hybrid contribution 1.384 -2.048 0.665 2.560 sum -9.946 -4.874 -16.714 20.051 Atomic orbital electron populations 1.22131 0.95413 1.02430 1.02669 1.21522 0.94907 0.81363 1.03353 1.47903 1.64964 1.14221 1.05856 1.21693 0.96303 0.99344 0.84435 1.22275 0.96546 0.96122 0.93370 1.59942 1.04096 1.60790 1.04803 1.21641 0.90666 0.98269 0.97294 1.19750 0.84256 0.86483 0.86933 1.90531 1.42611 1.46405 1.66951 1.41862 1.10584 1.46190 1.21345 1.19762 0.97861 1.27680 0.97516 0.87815 1.25270 0.95161 0.97604 0.99909 1.69622 1.03133 1.41510 1.40078 0.85797 0.78575 0.78929 0.81049 1.19154 1.20769 1.20706 1.16967 0.77955 0.82924 0.83517 1.90834 1.51706 1.66575 1.31244 1.20360 0.86586 0.95618 1.17078 1.42959 1.09745 1.09025 1.52659 0.74044 1.23308 0.97113 0.80602 1.01664 1.20292 0.89644 0.99567 1.03613 1.69991 0.98954 1.31691 1.19725 1.20827 0.96787 0.87008 1.02228 1.20195 0.88096 1.03209 1.01942 0.91440 0.92208 0.92020 0.89870 0.90067 0.88407 0.89708 0.95283 0.91618 0.82993 0.93898 0.89863 0.77519 0.91912 0.89870 0.88454 0.90373 0.90359 0.90312 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 37.16 0.38 -0.87 16 2 C 0.11 0.91 6.09 -4.04 -0.02 0.89 16 3 N -0.60 -5.96 2.47 -175.21 -0.43 -6.39 16 4 C 0.11 1.07 5.43 -4.05 -0.02 1.05 16 5 C 0.05 0.56 6.01 -3.83 -0.02 0.53 16 6 N -0.66 -10.10 6.13 -115.07 -0.70 -10.81 16 7 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 8 C 0.44 10.17 7.82 -10.99 -0.09 10.09 16 9 O -0.58 -15.49 15.78 5.55 0.09 -15.40 16 10 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 11 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 12 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 13 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 14 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 15 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.60 7.37 7.15 -12.81 -0.09 7.28 16 20 O -0.53 -7.91 16.74 5.21 0.09 -7.82 16 21 C -0.08 -0.98 5.50 -82.14 -0.45 -1.43 16 22 N -0.54 -5.72 6.19 -7.02 -0.04 -5.76 16 23 H 0.42 3.33 8.96 -40.82 -0.37 2.97 16 24 C 0.24 2.71 8.12 -155.61 -1.26 1.45 16 25 C -0.07 -0.56 10.51 36.00 0.38 -0.18 16 26 N -0.48 -6.73 11.20 -6.85 -0.08 -6.81 16 27 C 0.06 0.84 6.15 -82.52 -0.51 0.34 16 28 C -0.08 -0.81 9.81 36.00 0.35 -0.45 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.75 7.50 -51.93 -0.39 0.36 16 33 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 34 H 0.10 1.14 5.03 -51.93 -0.26 0.88 16 35 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.80 8.00 -51.93 -0.42 0.39 16 38 H 0.35 5.37 8.43 -39.29 -0.33 5.04 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.76 7.49 -51.93 -0.39 0.37 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 LS Contribution 406.16 15.07 6.12 6.12 Total: -1.00 -34.91 406.16 -8.41 -43.32 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -7.46 Total: 13.66 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -1.63 Total: 11.69 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -0.59 Total: -67.34 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.17 Total: -23.23 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.91 -8.41 -43.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715757365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.403 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds