Wall clock time and date at job start Tue Mar 31 2020 20:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46870 * 2 1 4 4 C 1.46494 * 120.00432 * 90.14082 * 3 2 1 5 5 C 1.52998 * 109.47475 * 89.99454 * 4 3 2 6 6 N 1.46897 * 109.47250 * 180.02562 * 5 4 3 7 7 C 1.46898 * 111.00024 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47361 * 180.02562 * 7 6 5 9 9 O 1.21291 * 119.99805 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00215 * 180.02562 * 8 7 6 11 11 C 1.37100 * 119.99842 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99976 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99805 * 179.97438 * 11 10 8 14 14 N 1.31419 * 119.99922 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00117 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46951 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47191 * 119.99823 * 15 13 11 18 18 H 1.48493 * 109.47118 * 240.00084 * 15 13 11 19 19 C 1.34779 * 119.99515 * 270.13461 * 3 2 1 20 20 O 1.21678 * 120.00126 * 4.94268 * 19 3 2 21 21 C 1.46770 * 120.00045 * 184.94122 * 19 3 2 22 22 N 1.38145 * 126.84124 * 103.10488 * 21 19 3 23 23 H 0.96998 * 126.47954 * 359.97438 * 22 21 19 24 24 C 1.34495 * 107.05357 * 179.97438 * 22 21 19 25 25 C 1.50696 * 125.42200 * 180.02562 * 24 22 21 26 26 N 1.30865 * 109.16356 * 359.97438 * 24 22 21 27 27 C 1.33317 * 109.68335 * 359.76868 * 26 24 22 28 28 C 1.50695 * 126.10821 * 180.27204 * 27 26 24 29 29 H 1.09000 * 109.47345 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47107 * 300.00393 * 1 2 3 31 31 H 1.09001 * 109.47296 * 60.00363 * 1 2 3 32 32 H 1.08991 * 109.47065 * 239.99960 * 2 1 3 33 33 H 1.08996 * 109.46865 * 119.99476 * 2 1 3 34 34 H 1.09000 * 109.46950 * 210.00097 * 4 3 2 35 35 H 1.09002 * 109.47185 * 329.99662 * 4 3 2 36 36 H 1.08995 * 109.47119 * 300.00124 * 5 4 3 37 37 H 1.09002 * 109.46744 * 59.99938 * 5 4 3 38 38 H 1.00901 * 111.00084 * 56.04931 * 6 5 4 39 39 H 1.09000 * 109.47409 * 299.99987 * 7 6 5 40 40 H 1.08994 * 109.47330 * 60.00139 * 7 6 5 41 41 H 0.96999 * 120.00216 * 359.97438 * 10 8 7 42 42 H 0.97000 * 119.99619 * 179.97438 * 14 13 11 43 43 H 1.09000 * 109.47632 * 89.99257 * 25 24 22 44 44 H 1.09003 * 109.47429 * 209.99959 * 25 24 22 45 45 H 1.09005 * 109.46966 * 329.99397 * 25 24 22 46 46 H 1.09002 * 109.47075 * 270.12271 * 28 27 26 47 47 H 1.08999 * 109.47417 * 30.12370 * 28 27 26 48 48 H 1.08999 * 109.47397 * 150.12376 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2654 2.0709 1.2686 5 6 3.7113 1.8302 1.7069 6 7 3.9589 2.5212 2.9793 7 6 5.3408 2.3124 3.4316 8 6 5.5566 3.0339 4.7369 9 8 4.6484 3.6601 5.2411 10 7 6.7588 2.9834 5.3441 11 6 6.9549 3.6394 6.5319 12 1 6.1462 4.1970 6.9808 13 6 8.1941 3.5869 7.1582 14 7 9.1780 2.9080 6.6122 15 14 8.4616 4.4813 8.7762 16 1 7.2062 5.1659 9.1768 17 1 8.8476 3.5030 9.8246 18 1 9.5435 5.4854 8.6137 19 6 2.2402 2.0174 -1.1673 20 8 1.9506 1.4781 -2.2188 21 6 2.8313 3.3609 -1.1700 22 7 4.1388 3.6900 -1.4709 23 1 4.8453 3.0745 -1.7216 24 6 4.2471 5.0251 -1.3505 25 6 5.5028 5.8243 -1.5864 26 7 3.0884 5.5201 -0.9971 27 6 2.1962 4.5362 -0.8818 28 6 0.7470 4.6919 -0.4991 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5137 0.8900 34 1 2.0980 3.1402 1.1394 35 1 1.5863 1.6862 2.0296 36 1 3.8786 0.7609 1.8360 37 1 4.3904 2.2148 0.9459 38 1 3.2992 2.2282 3.6843 39 1 5.5200 1.2464 3.5722 40 1 6.0309 2.7011 2.6828 41 1 7.4850 2.4823 4.9412 42 1 10.0433 2.8717 7.0492 43 1 5.5499 6.1268 -2.6325 44 1 5.4940 6.7106 -0.9519 45 1 6.3729 5.2135 -1.3453 46 1 0.6477 4.6211 0.5841 47 1 0.3850 5.6637 -0.8344 48 1 0.1601 3.9033 -0.9700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715757365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:12 Heat of formation + Delta-G solvation = -43.149197 kcal Electronic energy + Delta-G solvation = -29512.936625 eV Core-core repulsion = 25409.593074 eV Total energy + Delta-G solvation = -4103.343551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.31779 -40.83386 -40.14864 -37.85709 -36.35324 -35.72986 -34.50125 -33.44867 -33.26174 -32.15062 -30.28368 -30.09369 -27.83472 -27.36860 -25.67433 -24.46707 -23.53634 -22.27520 -21.85676 -21.15125 -20.23353 -19.90235 -18.78300 -18.06916 -17.89005 -17.35850 -17.07172 -16.47818 -16.35241 -16.01853 -15.93773 -15.44945 -15.35611 -14.99361 -14.83470 -14.68934 -14.36587 -14.19678 -13.97765 -13.84306 -13.72906 -13.46784 -13.39222 -13.35153 -13.24106 -13.04472 -12.93346 -12.86106 -12.77852 -12.40258 -12.23325 -12.11100 -11.96787 -11.63236 -11.51195 -11.00393 -10.94327 -10.39618 -10.01415 -9.93639 -9.39488 -9.29869 -8.47014 -5.95428 0.61147 1.04822 1.36855 1.42828 1.56604 1.67984 1.95441 2.04534 2.21383 2.31222 2.92744 3.20446 3.30697 3.45623 3.60209 3.87999 3.94069 4.00249 4.09591 4.14876 4.27493 4.31455 4.39539 4.45409 4.50139 4.54095 4.55784 4.61325 4.71080 4.73515 4.75938 4.85797 4.87622 4.94746 4.97896 5.07114 5.10348 5.29930 5.41514 5.42464 5.59084 5.80330 6.03386 6.08524 6.31238 6.36552 6.59553 6.82793 6.96627 7.12776 7.55798 8.10934 8.70524 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.002601 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.131240 B =10760.672928 C =11937.522900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.585 5.585 4 C 0.111 3.889 5 C 0.055 3.945 6 N -0.677 5.677 7 C 0.070 3.930 8 C 0.438 3.562 9 O -0.621 6.621 10 N -0.573 5.573 11 C -0.332 4.332 12 H 0.079 0.921 13 C -0.012 4.012 14 N -0.920 5.920 15 Si 0.991 3.009 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.272 1.272 19 C 0.604 3.396 20 O -0.561 6.561 21 C -0.090 4.090 22 N -0.533 5.533 23 H 0.433 0.567 24 C 0.235 3.765 25 C -0.071 4.071 26 N -0.521 5.521 27 C 0.048 3.952 28 C -0.074 4.074 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.350 0.650 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.171 -5.344 -17.011 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.316 5.316 4 C -0.012 4.012 5 C -0.075 4.075 6 N -0.310 5.310 7 C -0.063 4.063 8 C 0.225 3.775 9 O -0.507 6.507 10 N -0.210 5.210 11 C -0.462 4.462 12 H 0.097 0.903 13 C -0.212 4.212 14 N -0.561 5.561 15 Si 0.815 3.185 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.197 1.197 19 C 0.390 3.610 20 O -0.439 6.439 21 C -0.207 4.207 22 N -0.138 5.138 23 H 0.273 0.727 24 C -0.029 4.029 25 C -0.129 4.129 26 N -0.243 5.243 27 C -0.086 4.086 28 C -0.132 4.132 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.169 0.831 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.785 -3.863 -17.320 20.765 hybrid contribution 1.196 -1.742 0.609 2.199 sum -9.589 -5.605 -16.711 20.065 Atomic orbital electron populations 1.22088 0.94702 1.03371 1.01964 1.21730 0.95499 0.80216 1.04104 1.47900 1.63909 1.14735 1.05100 1.21621 0.96002 0.98784 0.84766 1.22249 0.97189 0.96732 0.91346 1.59890 1.03053 1.62157 1.05948 1.21469 0.92182 0.98726 0.93902 1.20821 0.82931 0.85443 0.88263 1.90502 1.43678 1.47990 1.68521 1.41922 1.11489 1.46497 1.21077 1.19695 0.97961 1.29249 0.99261 0.90319 1.26013 0.94478 0.97938 1.02741 1.69675 1.03465 1.41799 1.41183 0.84894 0.78223 0.78057 0.77333 1.19774 1.19600 1.19684 1.16981 0.77630 0.82787 0.83629 1.90817 1.53331 1.67370 1.32393 1.20427 0.87267 0.95537 1.17506 1.42948 1.09603 1.09089 1.52203 0.72664 1.23958 0.97556 0.81066 1.00334 1.20449 0.88663 0.99159 1.04680 1.69986 1.00154 1.32723 1.21399 1.21212 0.97638 0.87223 1.02483 1.20219 0.87177 1.03470 1.02292 0.89722 0.91569 0.93990 0.90645 0.87732 0.89817 0.87656 0.93414 0.92070 0.83087 0.91341 0.88400 0.77008 0.91318 0.88001 0.89044 0.88408 0.89813 0.90153 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.24 71.98 0.74 -1.39 16 2 C 0.11 1.52 6.09 86.38 0.53 2.05 16 3 N -0.59 -10.75 2.47 -826.45 -2.04 -12.80 16 4 C 0.11 2.05 5.43 86.38 0.47 2.52 16 5 C 0.05 1.14 6.01 86.30 0.52 1.66 16 6 N -0.68 -19.39 6.13 -517.96 -3.17 -22.56 16 7 C 0.07 2.23 6.17 85.56 0.53 2.76 16 8 C 0.44 20.12 7.82 87.66 0.69 20.80 16 9 O -0.62 -33.47 15.78 -3.06 -0.05 -33.51 16 10 N -0.57 -28.59 5.29 -306.99 -1.62 -30.22 16 11 C -0.33 -18.54 9.68 84.04 0.81 -17.72 16 12 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 13 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 14 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16 15 Si 0.99 42.25 29.55 68.60 2.03 44.28 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 19 C 0.60 14.41 7.15 86.47 0.62 15.03 16 20 O -0.56 -16.72 16.74 -4.28 -0.07 -16.80 16 21 C -0.09 -2.18 5.50 40.01 0.22 -1.96 16 22 N -0.53 -10.86 6.19 -176.11 -1.09 -11.95 16 23 H 0.43 6.34 8.96 -92.71 -0.83 5.51 16 24 C 0.23 5.22 8.12 138.19 1.12 6.34 16 25 C -0.07 -1.01 10.51 71.23 0.75 -0.26 16 26 N -0.52 -14.56 11.20 -175.58 -1.97 -16.53 16 27 C 0.05 1.24 6.15 41.96 0.26 1.50 16 28 C -0.07 -1.56 9.81 71.23 0.70 -0.86 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.25 7.50 -2.39 -0.02 1.23 16 33 H 0.10 1.05 8.07 -2.39 -0.02 1.03 16 34 H 0.08 1.86 5.03 -2.39 -0.01 1.84 16 35 H 0.11 1.54 8.07 -2.39 -0.02 1.52 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 1.35 8.00 -2.39 -0.02 1.33 16 38 H 0.35 10.15 8.43 -89.69 -0.76 9.40 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 42 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 43 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.08 1.63 7.49 -2.39 -0.02 1.61 16 47 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.07 1.40 7.94 -2.39 -0.02 1.38 16 Total: -1.00 -76.09 406.16 -0.61 -76.70 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -1.31 Total: 41.49 kcal Atomic # 6 Polarization: 21.89 SS G_CDS: 8.41 Total: 30.30 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -9.61 Total: -142.46 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -0.12 Total: -50.31 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -76.09 -0.61 -76.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715757365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.546 kcal (2) G-P(sol) polarization free energy of solvation -76.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds