Wall clock time and date at job start Tue Mar 31 2020 20:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47044 * 2 1 4 4 C 1.46499 * 120.00316 * 277.10906 * 3 2 1 5 5 C 1.52994 * 109.47370 * 270.00545 * 4 3 2 6 6 N 1.46899 * 109.47171 * 180.02562 * 5 4 3 7 7 C 1.46900 * 111.00108 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47339 * 179.97438 * 7 6 5 9 9 O 1.21286 * 119.99825 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99846 * 179.97438 * 8 7 6 11 11 C 1.37098 * 119.99596 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99930 * 0.02562 * 11 10 8 13 13 C 1.38950 * 119.99958 * 180.02562 * 11 10 8 14 14 N 1.31408 * 119.99678 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99913 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47228 * 90.00076 * 15 13 11 17 17 H 1.48508 * 109.46762 * 209.99843 * 15 13 11 18 18 H 1.48499 * 109.47314 * 329.99477 * 15 13 11 19 19 C 1.34777 * 119.99415 * 97.11611 * 3 2 1 20 20 O 1.21608 * 119.99913 * 187.17334 * 19 3 2 21 21 C 1.47432 * 120.00566 * 7.17471 * 19 3 2 22 22 C 1.38050 * 126.40753 * 331.57407 * 21 19 3 23 23 N 1.34264 * 107.40848 * 179.89473 * 22 21 19 24 24 C 1.46498 * 125.74682 * 180.13601 * 23 22 21 25 25 N 1.39929 * 108.49511 * 0.37587 * 23 22 21 26 26 C 1.30448 * 108.89759 * 359.75820 * 25 23 22 27 27 C 1.50697 * 125.98738 * 179.97438 * 26 25 23 28 28 H 1.09004 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46610 * 299.99946 * 1 2 3 30 30 H 1.08997 * 109.47095 * 59.99760 * 1 2 3 31 31 H 1.09005 * 109.47013 * 239.99938 * 2 1 3 32 32 H 1.08996 * 109.46910 * 120.00755 * 2 1 3 33 33 H 1.09001 * 109.46911 * 30.00169 * 4 3 2 34 34 H 1.09001 * 109.46694 * 150.00198 * 4 3 2 35 35 H 1.09005 * 109.47249 * 299.99847 * 5 4 3 36 36 H 1.09005 * 109.47267 * 59.99678 * 5 4 3 37 37 H 1.00899 * 111.00235 * 56.04531 * 6 5 4 38 38 H 1.09001 * 109.47146 * 300.00222 * 7 6 5 39 39 H 1.09000 * 109.47192 * 59.99723 * 7 6 5 40 40 H 0.97001 * 120.00302 * 359.97438 * 10 8 7 41 41 H 0.97002 * 119.99827 * 180.02562 * 14 13 11 42 42 H 1.07997 * 126.29579 * 0.02562 * 22 21 19 43 43 H 1.09002 * 109.47224 * 270.24959 * 24 23 22 44 44 H 1.08995 * 109.47429 * 30.25219 * 24 23 22 45 45 H 1.09008 * 109.47064 * 150.25019 * 24 23 22 46 46 H 1.09000 * 109.47574 * 270.03157 * 27 26 25 47 47 H 1.09001 * 109.47445 * 30.03601 * 27 26 25 48 48 H 1.09004 * 109.47067 * 150.02882 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1145 2.1242 -1.2589 5 6 3.4974 1.9057 -1.8758 6 7 3.5940 2.6513 -3.1379 7 6 4.9118 2.4651 -3.7598 8 6 4.9730 3.2424 -5.0494 9 8 4.0131 3.8876 -5.4147 10 7 6.0944 3.2207 -5.7967 11 6 6.1498 3.9274 -6.9702 12 1 5.2951 4.5019 -7.2955 13 6 7.3057 3.9046 -7.7410 14 7 8.3455 3.2051 -7.3454 15 14 7.3815 4.8682 -9.3395 16 1 7.8870 6.2379 -9.0683 17 1 8.2953 4.1821 -10.2881 18 1 6.0227 4.9503 -9.9329 19 6 2.3793 1.9683 1.1583 20 8 2.6597 3.1514 1.1788 21 6 2.4342 1.1762 2.4005 22 6 1.6774 0.0596 2.6944 23 7 2.0361 -0.3578 3.9191 24 6 1.4840 -1.5174 4.6239 25 7 3.0220 0.5048 4.4110 26 6 3.2666 1.4212 3.5155 27 6 4.2621 2.5449 3.6474 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3488 1.7702 -1.9491 34 1 1.9665 3.1867 -1.0659 35 1 4.2633 2.2598 -1.1856 36 1 3.6454 0.8431 -2.0688 37 1 3.3969 3.6305 -2.9954 38 1 5.6871 2.8228 -3.0823 39 1 5.0699 1.4066 -3.9662 40 1 6.8622 2.7049 -5.5044 41 1 9.1525 3.1895 -7.8833 42 1 0.9351 -0.3958 2.0558 43 1 0.6195 -1.2079 5.2113 44 1 1.1793 -2.2720 3.8989 45 1 2.2425 -1.9351 5.2861 46 1 3.7741 3.4125 4.0915 47 1 5.0873 2.2264 4.2844 48 1 4.6452 2.8085 2.6615 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716210147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:27 Heat of formation + Delta-G solvation = 23.609370 kcal Electronic energy + Delta-G solvation = -28651.215908 eV Core-core repulsion = 24550.767226 eV Total energy + Delta-G solvation = -4100.448682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.92643 -39.66482 -38.23078 -36.59968 -35.33791 -34.34539 -33.81678 -31.88928 -31.16533 -30.73659 -29.75457 -28.94597 -26.52635 -25.70960 -24.01540 -23.87792 -22.59869 -21.86959 -20.63895 -19.39578 -19.07557 -17.84916 -17.47340 -16.89734 -16.28948 -16.11530 -16.03478 -15.46635 -15.14688 -15.09886 -14.52947 -14.23598 -13.96734 -13.87871 -13.76122 -13.65805 -13.51831 -13.27448 -13.18897 -12.91158 -12.79890 -12.54787 -12.31584 -12.28542 -12.13006 -11.96343 -11.54736 -11.47894 -11.45540 -11.14131 -11.04729 -10.91317 -10.36598 -10.18634 -9.99443 -9.68027 -9.47516 -9.03374 -8.83702 -8.41020 -8.03299 -7.92311 -6.38303 -3.78970 1.14116 1.88983 1.92985 2.74846 3.11762 3.20665 3.28944 3.35204 3.92607 3.95127 4.12616 4.16961 4.39511 4.48334 4.55366 4.57467 4.62087 4.75275 4.84074 4.89716 4.98673 5.07313 5.13580 5.22617 5.24363 5.30246 5.31717 5.38410 5.49169 5.57295 5.62957 5.69632 5.76780 5.82404 5.91936 5.97776 6.04248 6.20603 6.28021 6.35419 6.41785 7.16683 7.23015 7.29053 7.58595 7.69204 8.09569 8.10092 8.65079 9.21386 9.58121 10.09717 10.79528 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.001845 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.960643 B =15175.334435 C =15680.959037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 N -0.607 5.607 4 C 0.119 3.881 5 C 0.046 3.954 6 N -0.667 5.667 7 C 0.052 3.948 8 C 0.442 3.558 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.593 3.407 20 O -0.533 6.533 21 C -0.283 4.283 22 C 0.082 3.918 23 N -0.364 5.364 24 C 0.096 3.904 25 N -0.301 5.301 26 C 0.131 3.869 27 C -0.074 4.074 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.351 0.649 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.196 0.804 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.659 -13.797 24.535 31.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.041 4.041 3 N -0.340 5.340 4 C -0.004 4.004 5 C -0.084 4.084 6 N -0.300 5.300 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.194 1.194 19 C 0.382 3.618 20 O -0.410 6.410 21 C -0.298 4.298 22 C -0.068 4.068 23 N -0.142 5.142 24 C -0.045 4.045 25 N -0.123 5.123 26 C -0.036 4.036 27 C -0.132 4.132 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.170 0.830 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.212 0.788 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.102 0.898 47 H 0.091 0.909 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.037 -13.831 25.069 31.887 hybrid contribution 0.839 0.594 -0.887 1.358 sum -13.198 -13.237 24.182 30.564 Atomic orbital electron populations 1.22308 0.95725 1.02498 1.03288 1.22087 0.94453 0.83227 1.04292 1.47711 1.65373 1.14144 1.06798 1.21382 0.97482 0.98055 0.83442 1.22261 0.96481 0.99299 0.90408 1.60024 1.29696 1.16870 1.23362 1.21653 0.89916 1.01042 0.95427 1.19802 0.84469 0.86386 0.86621 1.90519 1.36504 1.46537 1.73103 1.41862 1.13297 1.44376 1.20581 1.19711 1.00559 1.25388 0.97158 0.87902 1.25265 0.95076 0.97779 0.99905 1.69616 1.04082 1.41050 1.39632 0.85850 0.78302 0.79164 0.80919 1.20434 1.20958 1.19412 1.17331 0.76291 0.86188 0.82014 1.90787 1.49327 1.14947 1.85900 1.20253 1.08137 1.02362 0.99032 1.23761 0.99797 0.95386 0.87875 1.48361 1.29963 1.23181 1.12710 1.22000 0.99875 0.84427 0.98186 1.77192 1.08144 1.04653 1.22360 1.22454 0.96224 0.95286 0.89678 1.20267 0.95507 0.93354 1.04095 0.91174 0.92313 0.91177 0.89891 0.89153 0.89399 0.89460 0.95170 0.91210 0.82953 0.93809 0.89674 0.77460 0.91912 0.78806 0.90215 0.89014 0.88757 0.89806 0.90862 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.89 9.21 37.16 0.34 -0.55 16 2 C 0.08 0.54 5.64 -4.04 -0.02 0.52 16 3 N -0.61 -6.23 2.48 -174.95 -0.43 -6.67 16 4 C 0.12 1.40 5.74 -4.05 -0.02 1.37 16 5 C 0.05 0.62 6.01 -3.83 -0.02 0.59 16 6 N -0.67 -11.21 6.13 -115.06 -0.70 -11.92 16 7 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 8 C 0.44 10.71 7.82 -10.98 -0.09 10.63 16 9 O -0.58 -16.15 15.78 5.55 0.09 -16.06 16 10 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 11 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 12 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 15 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.59 7.45 7.50 -12.52 -0.09 7.35 16 20 O -0.53 -8.53 15.35 5.27 0.08 -8.45 16 21 C -0.28 -3.08 5.73 -105.07 -0.60 -3.68 16 22 C 0.08 0.62 9.07 -16.56 -0.15 0.47 16 23 N -0.36 -2.83 3.98 -67.59 -0.27 -3.09 16 24 C 0.10 0.28 11.44 59.85 0.68 0.96 16 25 N -0.30 -3.31 12.50 33.89 0.42 -2.89 16 26 C 0.13 1.50 7.26 -82.02 -0.60 0.91 16 27 C -0.07 -0.75 9.82 36.00 0.35 -0.39 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.30 7.38 -51.93 -0.38 -0.08 16 30 H 0.07 0.43 8.04 -51.93 -0.42 0.01 16 31 H 0.08 0.51 8.12 -51.93 -0.42 0.08 16 32 H 0.09 0.50 4.04 -51.93 -0.21 0.29 16 33 H 0.09 0.94 7.97 -51.93 -0.41 0.53 16 34 H 0.09 1.17 7.34 -51.93 -0.38 0.79 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.35 6.20 8.43 -39.29 -0.33 5.87 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 42 H 0.20 0.81 4.15 -52.49 -0.22 0.59 16 43 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 44 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 45 H 0.09 0.25 8.14 -51.92 -0.42 -0.17 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.09 0.96 7.39 -51.93 -0.38 0.58 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -36.64 399.65 -6.86 -43.49 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.22 Total: 11.12 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -0.49 Total: 10.97 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.32 Total: -63.41 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.17 Total: -24.51 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.64 -6.86 -43.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716210147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.102 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds