Wall clock time and date at job start Tue Mar 31 2020 20:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47044 * 2 1 4 4 C 1.46498 * 120.00112 * 263.43548 * 3 2 1 5 5 C 1.52998 * 109.47451 * 270.00288 * 4 3 2 6 6 N 1.46498 * 109.47451 * 179.97438 * 5 4 3 7 7 C 1.36935 * 120.00337 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99646 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00077 * 180.02562 * 7 6 5 10 10 N 1.31622 * 119.99796 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99953 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47033 * 89.99934 * 11 9 7 13 13 H 1.48498 * 109.47058 * 209.99979 * 11 9 7 14 14 H 1.48496 * 109.47354 * 330.00163 * 11 9 7 15 15 C 1.34775 * 119.99754 * 83.44199 * 3 2 1 16 16 O 1.21592 * 120.00048 * 183.90454 * 15 3 2 17 17 C 1.47524 * 119.99993 * 3.90218 * 15 3 2 18 18 C 1.36597 * 125.77134 * 173.66562 * 17 15 3 19 19 N 1.34813 * 106.84238 * 180.02562 * 18 17 15 20 20 C 1.46501 * 126.59831 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47051 * 124.99767 * 20 19 18 22 22 H 1.08997 * 110.44184 * 303.90975 * 21 20 19 23 23 C 1.54815 * 110.48775 * 181.22326 * 21 20 19 24 24 C 1.54999 * 102.09270 * 220.44714 * 23 21 20 25 25 O 1.44380 * 103.49282 * 37.02068 * 24 23 21 26 26 C 1.43752 * 106.97404 * 319.94379 * 25 24 23 27 27 N 1.40217 * 106.80865 * 0.02562 * 19 18 17 28 28 N 1.28756 * 108.36732 * 359.71981 * 27 19 18 29 29 H 1.08999 * 109.46610 * 299.99946 * 1 2 3 30 30 H 1.08997 * 109.47095 * 59.99760 * 1 2 3 31 31 H 1.09004 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47013 * 239.99938 * 2 1 3 33 33 H 1.08996 * 109.46910 * 120.00755 * 2 1 3 34 34 H 1.08995 * 109.47180 * 30.00394 * 4 3 2 35 35 H 1.08998 * 109.46909 * 150.00307 * 4 3 2 36 36 H 1.08998 * 109.47518 * 300.00293 * 5 4 3 37 37 H 1.08998 * 109.47049 * 60.00104 * 5 4 3 38 38 H 0.97001 * 119.99816 * 0.02562 * 6 5 4 39 39 H 0.97000 * 119.99529 * 180.02562 * 10 9 7 40 40 H 1.07998 * 126.58124 * 0.02562 * 18 17 15 41 41 H 1.08990 * 109.47472 * 245.00419 * 20 19 18 42 42 H 1.09004 * 109.46467 * 5.00458 * 20 19 18 43 43 H 1.09000 * 110.90585 * 338.64398 * 23 21 20 44 44 H 1.08999 * 110.90621 * 102.25055 * 23 21 20 45 45 H 1.09001 * 110.61538 * 278.52234 * 24 23 21 46 46 H 1.08995 * 110.74987 * 155.59075 * 24 23 21 47 47 H 1.09001 * 109.87529 * 267.08427 * 26 25 24 48 48 H 1.08996 * 109.99980 * 146.00571 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3993 2.0235 -1.2604 5 6 3.8829 1.7694 -1.5343 6 7 4.2637 2.4112 -2.7950 7 6 5.5523 2.3181 -3.2489 8 1 6.2880 1.7719 -2.6772 9 6 5.9131 2.9267 -4.4432 10 7 7.1519 2.8377 -4.8792 11 14 4.6407 3.8720 -5.4315 12 1 4.6324 5.2923 -4.9980 13 1 4.9799 3.7971 -6.8753 14 1 3.2984 3.2781 -5.2070 15 6 2.1173 2.0609 1.1596 16 8 2.4546 3.2291 1.1527 17 6 1.8163 1.3877 2.4372 18 6 1.9936 1.9212 3.6821 19 7 1.5997 0.9847 4.5682 20 6 1.6085 1.1050 6.0283 21 6 0.2083 0.8150 6.5723 22 1 -0.5242 1.4769 6.1105 23 6 0.1836 0.9658 8.1129 24 6 -0.7071 -0.2279 8.5418 25 8 -0.3346 -1.2746 7.6198 26 6 -0.1693 -0.6594 6.3311 27 7 1.1810 -0.1273 3.8237 28 7 1.3171 0.1472 2.5731 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8035 1.6094 -2.0738 35 1 2.2215 3.0965 -1.1896 36 1 4.4788 2.1835 -0.7210 37 1 4.0607 0.6964 -1.6052 38 1 3.6030 2.9021 -3.3083 39 1 7.4041 3.2632 -5.7136 40 1 2.3760 2.9046 3.9124 41 1 2.3165 0.3903 6.4475 42 1 1.9046 2.1163 6.3076 43 1 1.1867 0.8719 8.5291 44 1 -0.2696 1.9135 8.4037 45 1 -1.7625 0.0220 8.4327 46 1 -0.4882 -0.5241 9.5677 47 1 -1.1026 -0.7161 5.7709 48 1 0.6256 -1.1599 5.7783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716247845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:48 Heat of formation + Delta-G solvation = 49.731725 kcal Electronic energy + Delta-G solvation = -29084.832671 eV Core-core repulsion = 24985.516739 eV Total energy + Delta-G solvation = -4099.315932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.55615 -40.07571 -39.51018 -36.27627 -35.75429 -34.67019 -32.79337 -31.87843 -31.14017 -30.41790 -29.93137 -27.99708 -27.06467 -24.47076 -23.54814 -23.38825 -22.58345 -22.33517 -21.39692 -21.20843 -19.55903 -17.84720 -17.46119 -17.14099 -16.85772 -16.49744 -16.25876 -15.95552 -15.48034 -15.13411 -14.94985 -14.39183 -14.31445 -13.91959 -13.83515 -13.81179 -13.57920 -13.53221 -13.29427 -12.70011 -12.60887 -12.44067 -12.26513 -12.03171 -11.93512 -11.75582 -11.57370 -11.49265 -11.47878 -11.09890 -11.08783 -10.82026 -10.68747 -10.48382 -10.18418 -10.12892 -9.95022 -9.55633 -9.51987 -8.85069 -8.50902 -7.19682 -5.72187 -3.08071 0.84638 1.55227 1.62707 2.98548 3.26702 3.34977 3.41836 3.45265 3.49457 3.65644 3.72162 3.90307 4.08326 4.30973 4.40257 4.45763 4.54079 4.60210 4.63809 4.69443 4.86334 4.97768 5.06213 5.11965 5.13244 5.22200 5.26434 5.34618 5.37599 5.47751 5.53973 5.54419 5.62628 5.65690 5.79162 5.87774 5.98638 6.03447 6.04992 6.31490 6.32663 6.55754 6.69764 6.87108 7.44315 7.68983 8.03261 8.20436 8.46192 9.24985 9.97152 10.16729 11.46162 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028957 B = 0.001998 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.704470 B =14008.057030 C =14362.211863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 N -0.591 5.591 4 C 0.104 3.896 5 C 0.146 3.854 6 N -0.753 5.753 7 C -0.242 4.242 8 H 0.090 0.910 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.277 1.277 15 C 0.599 3.401 16 O -0.535 6.535 17 C -0.092 4.092 18 C 0.095 3.905 19 N -0.364 5.364 20 C 0.130 3.870 21 C -0.137 4.137 22 H 0.093 0.907 23 C -0.147 4.147 24 C 0.045 3.955 25 O -0.377 6.377 26 C 0.051 3.949 27 N -0.072 5.072 28 N -0.195 5.195 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.031 0.969 37 H 0.028 0.972 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.205 0.795 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.062 0.938 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.012 -5.097 29.399 35.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.026 4.026 3 N -0.322 5.322 4 C -0.018 4.018 5 C 0.018 3.982 6 N -0.399 5.399 7 C -0.372 4.372 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.384 3.616 16 O -0.410 6.410 17 C -0.231 4.231 18 C -0.062 4.062 19 N -0.149 5.149 20 C 0.009 3.991 21 C -0.157 4.157 22 H 0.111 0.889 23 C -0.185 4.185 24 C -0.031 4.031 25 O -0.296 6.296 26 C -0.026 4.026 27 N -0.052 5.052 28 N -0.069 5.069 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.221 0.779 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.080 0.920 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.119 -6.184 29.521 35.711 hybrid contribution -0.427 1.957 -0.803 2.158 sum -19.546 -4.227 28.718 34.994 Atomic orbital electron populations 1.22045 0.95846 1.02011 1.01510 1.21940 0.94602 0.81683 1.04343 1.47700 1.63492 1.14650 1.06371 1.21774 0.97092 0.99215 0.83728 1.20900 0.91652 0.96357 0.89272 1.42554 1.09773 1.64682 1.22930 1.19039 0.85570 1.28519 1.04035 0.89242 1.24673 0.96107 1.00613 0.97839 1.69709 1.16411 1.49086 1.23061 0.86515 0.81466 0.80489 0.79883 1.21003 1.21738 1.20302 1.16811 0.77530 0.85340 0.81878 1.90834 1.48357 1.15377 1.86479 1.21509 1.13010 0.93552 0.95038 1.23391 0.97424 0.96621 0.88745 1.50488 1.44196 1.11909 1.08316 1.22155 0.98695 1.05072 0.73191 1.22901 0.96319 0.99467 0.96985 0.88909 1.23169 1.02113 1.00267 0.92982 1.23556 0.98048 0.86731 0.94795 1.88928 1.90017 1.31779 1.18829 1.23360 1.02434 0.90929 0.85861 1.81915 1.20468 1.06369 0.96403 1.74804 1.10143 1.12387 1.09554 0.92740 0.93043 0.91625 0.90223 0.87992 0.90287 0.89590 0.95117 0.95422 0.80653 0.93085 0.77864 0.87783 0.87165 0.89683 0.89431 0.92027 0.88603 0.91963 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.71 37.16 0.36 -1.33 16 2 C 0.10 1.20 5.70 -4.04 -0.02 1.18 16 3 N -0.59 -8.81 2.49 -174.92 -0.44 -9.25 16 4 C 0.10 1.76 5.52 -4.04 -0.02 1.74 16 5 C 0.15 3.04 6.58 -4.04 -0.03 3.02 16 6 N -0.75 -18.76 5.41 -59.91 -0.32 -19.08 16 7 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 10 N -0.93 -30.00 13.97 55.49 0.78 -29.22 16 11 Si 0.89 22.61 27.73 -169.99 -4.71 17.89 16 12 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 14 H -0.28 -6.58 6.52 56.52 0.37 -6.22 16 15 C 0.60 9.23 7.62 -12.48 -0.10 9.14 16 16 O -0.53 -9.76 16.43 5.28 0.09 -9.67 16 17 C -0.09 -1.14 6.52 -83.55 -0.54 -1.69 16 18 C 0.09 0.85 11.28 -16.83 -0.19 0.66 16 19 N -0.36 -2.81 3.69 -61.07 -0.23 -3.04 16 20 C 0.13 0.51 5.73 -4.04 -0.02 0.48 16 21 C -0.14 -0.58 3.30 -89.09 -0.29 -0.88 16 22 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 23 C -0.15 -0.39 6.71 -24.72 -0.17 -0.55 16 24 C 0.05 0.20 7.72 38.21 0.29 0.49 16 25 O -0.38 -3.03 11.52 -35.23 -0.41 -3.43 16 26 C 0.05 0.35 6.59 37.73 0.25 0.60 16 27 N -0.07 -0.75 11.46 60.35 0.69 -0.06 16 28 N -0.20 -2.33 7.52 32.85 0.25 -2.09 16 29 H 0.05 0.63 7.00 -51.93 -0.36 0.27 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 33 H 0.10 1.27 5.32 -51.93 -0.28 1.00 16 34 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.09 1.54 7.37 -51.93 -0.38 1.16 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.36 8.64 5.53 -40.82 -0.23 8.42 16 39 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 40 H 0.20 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 0.13 8.08 -51.93 -0.42 -0.29 16 43 H 0.08 0.16 7.87 -51.93 -0.41 -0.25 16 44 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.10 0.83 6.21 -51.93 -0.32 0.51 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -36.89 389.22 -6.65 -43.54 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.48 Total: 2.94 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.73 Total: 5.60 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.73 Total: -62.74 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.32 Total: -13.10 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.89 -6.65 -43.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716247845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.274 kcal (2) G-P(sol) polarization free energy of solvation -36.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds