Wall clock time and date at job start Tue Mar 31 2020 20:23:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46500 * 109.47044 * 2 1
4 4 C 1.46498 * 120.00112 * 263.43548 * 3 2 1
5 5 C 1.52998 * 109.47451 * 270.00288 * 4 3 2
6 6 N 1.46498 * 109.47451 * 179.97438 * 5 4 3
7 7 C 1.36935 * 120.00337 * 180.02562 * 6 5 4
8 8 H 1.08001 * 119.99646 * 359.97438 * 7 6 5
9 9 C 1.38814 * 120.00077 * 180.02562 * 7 6 5
10 10 N 1.31622 * 119.99796 * 179.97438 * 9 7 6
11 11 Si 1.86796 * 119.99953 * 359.97438 * 9 7 6
12 12 H 1.48499 * 109.47033 * 89.99934 * 11 9 7
13 13 H 1.48498 * 109.47058 * 209.99979 * 11 9 7
14 14 H 1.48496 * 109.47354 * 330.00163 * 11 9 7
15 15 C 1.34775 * 119.99754 * 83.44199 * 3 2 1
16 16 O 1.21592 * 120.00048 * 183.90454 * 15 3 2
17 17 C 1.47524 * 119.99993 * 3.90218 * 15 3 2
18 18 C 1.36597 * 125.77134 * 173.66562 * 17 15 3
19 19 N 1.34813 * 106.84238 * 180.02562 * 18 17 15
20 20 C 1.46501 * 126.59831 * 179.97438 * 19 18 17
21 21 C 1.52995 * 109.47051 * 124.99767 * 20 19 18
22 22 H 1.08997 * 110.44184 * 303.90975 * 21 20 19
23 23 C 1.54815 * 110.48775 * 181.22326 * 21 20 19
24 24 C 1.54999 * 102.09270 * 220.44714 * 23 21 20
25 25 O 1.44380 * 103.49282 * 37.02068 * 24 23 21
26 26 C 1.43752 * 106.97404 * 319.94379 * 25 24 23
27 27 N 1.40217 * 106.80865 * 0.02562 * 19 18 17
28 28 N 1.28756 * 108.36732 * 359.71981 * 27 19 18
29 29 H 1.08999 * 109.46610 * 299.99946 * 1 2 3
30 30 H 1.08997 * 109.47095 * 59.99760 * 1 2 3
31 31 H 1.09004 * 109.47214 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.47013 * 239.99938 * 2 1 3
33 33 H 1.08996 * 109.46910 * 120.00755 * 2 1 3
34 34 H 1.08995 * 109.47180 * 30.00394 * 4 3 2
35 35 H 1.08998 * 109.46909 * 150.00307 * 4 3 2
36 36 H 1.08998 * 109.47518 * 300.00293 * 5 4 3
37 37 H 1.08998 * 109.47049 * 60.00104 * 5 4 3
38 38 H 0.97001 * 119.99816 * 0.02562 * 6 5 4
39 39 H 0.97000 * 119.99529 * 180.02562 * 10 9 7
40 40 H 1.07998 * 126.58124 * 0.02562 * 18 17 15
41 41 H 1.08990 * 109.47472 * 245.00419 * 20 19 18
42 42 H 1.09004 * 109.46467 * 5.00458 * 20 19 18
43 43 H 1.09000 * 110.90585 * 338.64398 * 23 21 20
44 44 H 1.08999 * 110.90621 * 102.25055 * 23 21 20
45 45 H 1.09001 * 110.61538 * 278.52234 * 24 23 21
46 46 H 1.08995 * 110.74987 * 155.59075 * 24 23 21
47 47 H 1.09001 * 109.87529 * 267.08427 * 26 25 24
48 48 H 1.08996 * 109.99980 * 146.00571 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3993 2.0235 -1.2604
5 6 3.8829 1.7694 -1.5343
6 7 4.2637 2.4112 -2.7950
7 6 5.5523 2.3181 -3.2489
8 1 6.2880 1.7719 -2.6772
9 6 5.9131 2.9267 -4.4432
10 7 7.1519 2.8377 -4.8792
11 14 4.6407 3.8720 -5.4315
12 1 4.6324 5.2923 -4.9980
13 1 4.9799 3.7971 -6.8753
14 1 3.2984 3.2781 -5.2070
15 6 2.1173 2.0609 1.1596
16 8 2.4546 3.2291 1.1527
17 6 1.8163 1.3877 2.4372
18 6 1.9936 1.9212 3.6821
19 7 1.5997 0.9847 4.5682
20 6 1.6085 1.1050 6.0283
21 6 0.2083 0.8150 6.5723
22 1 -0.5242 1.4769 6.1105
23 6 0.1836 0.9658 8.1129
24 6 -0.7071 -0.2279 8.5418
25 8 -0.3346 -1.2746 7.6198
26 6 -0.1693 -0.6594 6.3311
27 7 1.1810 -0.1273 3.8237
28 7 1.3171 0.1472 2.5731
29 1 -0.3632 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8934 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 1.8035 1.6094 -2.0738
35 1 2.2215 3.0965 -1.1896
36 1 4.4788 2.1835 -0.7210
37 1 4.0607 0.6964 -1.6052
38 1 3.6030 2.9021 -3.3083
39 1 7.4041 3.2632 -5.7136
40 1 2.3760 2.9046 3.9124
41 1 2.3165 0.3903 6.4475
42 1 1.9046 2.1163 6.3076
43 1 1.1867 0.8719 8.5291
44 1 -0.2696 1.9135 8.4037
45 1 -1.7625 0.0220 8.4327
46 1 -0.4882 -0.5241 9.5677
47 1 -1.1026 -0.7161 5.7709
48 1 0.6256 -1.1599 5.7783
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001716247845.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:23:48
Heat of formation + Delta-G solvation = 49.731725 kcal
Electronic energy + Delta-G solvation = -29084.832671 eV
Core-core repulsion = 24985.516739 eV
Total energy + Delta-G solvation = -4099.315932 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 337.190 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.55615 -40.07571 -39.51018 -36.27627 -35.75429 -34.67019 -32.79337 -31.87843
-31.14017 -30.41790 -29.93137 -27.99708 -27.06467 -24.47076 -23.54814 -23.38825
-22.58345 -22.33517 -21.39692 -21.20843 -19.55903 -17.84720 -17.46119 -17.14099
-16.85772 -16.49744 -16.25876 -15.95552 -15.48034 -15.13411 -14.94985 -14.39183
-14.31445 -13.91959 -13.83515 -13.81179 -13.57920 -13.53221 -13.29427 -12.70011
-12.60887 -12.44067 -12.26513 -12.03171 -11.93512 -11.75582 -11.57370 -11.49265
-11.47878 -11.09890 -11.08783 -10.82026 -10.68747 -10.48382 -10.18418 -10.12892
-9.95022 -9.55633 -9.51987 -8.85069 -8.50902 -7.19682 -5.72187 -3.08071
0.84638 1.55227 1.62707 2.98548 3.26702 3.34977 3.41836 3.45265
3.49457 3.65644 3.72162 3.90307 4.08326 4.30973 4.40257 4.45763
4.54079 4.60210 4.63809 4.69443 4.86334 4.97768 5.06213 5.11965
5.13244 5.22200 5.26434 5.34618 5.37599 5.47751 5.53973 5.54419
5.62628 5.65690 5.79162 5.87774 5.98638 6.03447 6.04992 6.31490
6.32663 6.55754 6.69764 6.87108 7.44315 7.68983 8.03261 8.20436
8.46192 9.24985 9.97152 10.16729 11.46162
Molecular weight = 337.19amu
Principal moments of inertia in cm(-1)
A = 0.028957 B = 0.001998 C = 0.001949
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 966.704470 B =14008.057030 C =14362.211863
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.097 3.903
3 N -0.591 5.591
4 C 0.104 3.896
5 C 0.146 3.854
6 N -0.753 5.753
7 C -0.242 4.242
8 H 0.090 0.910
9 C 0.003 3.997
10 N -0.935 5.935
11 Si 0.886 3.114
12 H -0.283 1.283
13 H -0.291 1.291
14 H -0.277 1.277
15 C 0.599 3.401
16 O -0.535 6.535
17 C -0.092 4.092
18 C 0.095 3.905
19 N -0.364 5.364
20 C 0.130 3.870
21 C -0.137 4.137
22 H 0.093 0.907
23 C -0.147 4.147
24 C 0.045 3.955
25 O -0.377 6.377
26 C 0.051 3.949
27 N -0.072 5.072
28 N -0.195 5.195
29 H 0.054 0.946
30 H 0.050 0.950
31 H 0.065 0.935
32 H 0.079 0.921
33 H 0.102 0.898
34 H 0.079 0.921
35 H 0.086 0.914
36 H 0.031 0.969
37 H 0.028 0.972
38 H 0.361 0.639
39 H 0.259 0.741
40 H 0.205 0.795
41 H 0.104 0.896
42 H 0.110 0.890
43 H 0.085 0.915
44 H 0.087 0.913
45 H 0.061 0.939
46 H 0.096 0.904
47 H 0.062 0.938
48 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.012 -5.097 29.399 35.380
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.026 4.026
3 N -0.322 5.322
4 C -0.018 4.018
5 C 0.018 3.982
6 N -0.399 5.399
7 C -0.372 4.372
8 H 0.108 0.892
9 C -0.192 4.192
10 N -0.583 5.583
11 Si 0.716 3.284
12 H -0.210 1.210
13 H -0.217 1.217
14 H -0.203 1.203
15 C 0.384 3.616
16 O -0.410 6.410
17 C -0.231 4.231
18 C -0.062 4.062
19 N -0.149 5.149
20 C 0.009 3.991
21 C -0.157 4.157
22 H 0.111 0.889
23 C -0.185 4.185
24 C -0.031 4.031
25 O -0.296 6.296
26 C -0.026 4.026
27 N -0.052 5.052
28 N -0.069 5.069
29 H 0.073 0.927
30 H 0.070 0.930
31 H 0.084 0.916
32 H 0.098 0.902
33 H 0.120 0.880
34 H 0.097 0.903
35 H 0.104 0.896
36 H 0.049 0.951
37 H 0.046 0.954
38 H 0.193 0.807
39 H 0.069 0.931
40 H 0.221 0.779
41 H 0.122 0.878
42 H 0.128 0.872
43 H 0.103 0.897
44 H 0.106 0.894
45 H 0.080 0.920
46 H 0.114 0.886
47 H 0.080 0.920
48 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -19.119 -6.184 29.521 35.711
hybrid contribution -0.427 1.957 -0.803 2.158
sum -19.546 -4.227 28.718 34.994
Atomic orbital electron populations
1.22045 0.95846 1.02011 1.01510 1.21940 0.94602 0.81683 1.04343
1.47700 1.63492 1.14650 1.06371 1.21774 0.97092 0.99215 0.83728
1.20900 0.91652 0.96357 0.89272 1.42554 1.09773 1.64682 1.22930
1.19039 0.85570 1.28519 1.04035 0.89242 1.24673 0.96107 1.00613
0.97839 1.69709 1.16411 1.49086 1.23061 0.86515 0.81466 0.80489
0.79883 1.21003 1.21738 1.20302 1.16811 0.77530 0.85340 0.81878
1.90834 1.48357 1.15377 1.86479 1.21509 1.13010 0.93552 0.95038
1.23391 0.97424 0.96621 0.88745 1.50488 1.44196 1.11909 1.08316
1.22155 0.98695 1.05072 0.73191 1.22901 0.96319 0.99467 0.96985
0.88909 1.23169 1.02113 1.00267 0.92982 1.23556 0.98048 0.86731
0.94795 1.88928 1.90017 1.31779 1.18829 1.23360 1.02434 0.90929
0.85861 1.81915 1.20468 1.06369 0.96403 1.74804 1.10143 1.12387
1.09554 0.92740 0.93043 0.91625 0.90223 0.87992 0.90287 0.89590
0.95117 0.95422 0.80653 0.93085 0.77864 0.87783 0.87165 0.89683
0.89431 0.92027 0.88603 0.91963 0.87946
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.69 9.71 37.16 0.36 -1.33 16
2 C 0.10 1.20 5.70 -4.04 -0.02 1.18 16
3 N -0.59 -8.81 2.49 -174.92 -0.44 -9.25 16
4 C 0.10 1.76 5.52 -4.04 -0.02 1.74 16
5 C 0.15 3.04 6.58 -4.04 -0.03 3.02 16
6 N -0.75 -18.76 5.41 -59.91 -0.32 -19.08 16
7 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16
8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16
9 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16
10 N -0.93 -30.00 13.97 55.49 0.78 -29.22 16
11 Si 0.89 22.61 27.73 -169.99 -4.71 17.89 16
12 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16
13 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16
14 H -0.28 -6.58 6.52 56.52 0.37 -6.22 16
15 C 0.60 9.23 7.62 -12.48 -0.10 9.14 16
16 O -0.53 -9.76 16.43 5.28 0.09 -9.67 16
17 C -0.09 -1.14 6.52 -83.55 -0.54 -1.69 16
18 C 0.09 0.85 11.28 -16.83 -0.19 0.66 16
19 N -0.36 -2.81 3.69 -61.07 -0.23 -3.04 16
20 C 0.13 0.51 5.73 -4.04 -0.02 0.48 16
21 C -0.14 -0.58 3.30 -89.09 -0.29 -0.88 16
22 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16
23 C -0.15 -0.39 6.71 -24.72 -0.17 -0.55 16
24 C 0.05 0.20 7.72 38.21 0.29 0.49 16
25 O -0.38 -3.03 11.52 -35.23 -0.41 -3.43 16
26 C 0.05 0.35 6.59 37.73 0.25 0.60 16
27 N -0.07 -0.75 11.46 60.35 0.69 -0.06 16
28 N -0.20 -2.33 7.52 32.85 0.25 -2.09 16
29 H 0.05 0.63 7.00 -51.93 -0.36 0.27 16
30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16
33 H 0.10 1.27 5.32 -51.93 -0.28 1.00 16
34 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16
35 H 0.09 1.54 7.37 -51.93 -0.38 1.16 16
36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16
37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
38 H 0.36 8.64 5.53 -40.82 -0.23 8.42 16
39 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16
40 H 0.20 1.29 8.06 -52.49 -0.42 0.86 16
41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16
42 H 0.11 0.13 8.08 -51.93 -0.42 -0.29 16
43 H 0.08 0.16 7.87 -51.93 -0.41 -0.25 16
44 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16
45 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16
46 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16
47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
48 H 0.10 0.83 6.21 -51.93 -0.32 0.51 16
LS Contribution 389.22 15.07 5.87 5.87
Total: -1.00 -36.89 389.22 -6.65 -43.54
By element:
Atomic # 1 Polarization: 10.42 SS G_CDS: -7.48 Total: 2.94 kcal
Atomic # 6 Polarization: 6.33 SS G_CDS: -0.73 Total: 5.60 kcal
Atomic # 7 Polarization: -63.47 SS G_CDS: 0.73 Total: -62.74 kcal
Atomic # 8 Polarization: -12.78 SS G_CDS: -0.32 Total: -13.10 kcal
Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.89 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -36.89 -6.65 -43.54 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001716247845.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.274 kcal
(2) G-P(sol) polarization free energy of solvation -36.893 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.381 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.732 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds