Wall clock time and date at job start Tue Mar 31 2020 20:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47044 * 2 1 4 4 C 1.46498 * 120.00112 * 263.43548 * 3 2 1 5 5 C 1.52998 * 109.47451 * 270.00288 * 4 3 2 6 6 N 1.46498 * 109.47451 * 179.97438 * 5 4 3 7 7 C 1.36935 * 120.00337 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99646 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00077 * 180.02562 * 7 6 5 10 10 N 1.31622 * 119.99796 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99953 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47033 * 89.99934 * 11 9 7 13 13 H 1.48498 * 109.47058 * 209.99979 * 11 9 7 14 14 H 1.48496 * 109.47354 * 330.00163 * 11 9 7 15 15 C 1.34775 * 119.99754 * 83.44199 * 3 2 1 16 16 O 1.21592 * 120.00048 * 183.90454 * 15 3 2 17 17 C 1.47524 * 119.99993 * 3.90218 * 15 3 2 18 18 C 1.36597 * 125.77134 * 173.66562 * 17 15 3 19 19 N 1.34813 * 106.84238 * 180.02562 * 18 17 15 20 20 C 1.46501 * 126.59831 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47051 * 124.99767 * 20 19 18 22 22 H 1.08997 * 110.44184 * 303.90975 * 21 20 19 23 23 C 1.54815 * 110.48775 * 181.22326 * 21 20 19 24 24 C 1.54999 * 102.09270 * 220.44714 * 23 21 20 25 25 O 1.44380 * 103.49282 * 37.02068 * 24 23 21 26 26 C 1.43752 * 106.97404 * 319.94379 * 25 24 23 27 27 N 1.40217 * 106.80865 * 0.02562 * 19 18 17 28 28 N 1.28756 * 108.36732 * 359.71981 * 27 19 18 29 29 H 1.08999 * 109.46610 * 299.99946 * 1 2 3 30 30 H 1.08997 * 109.47095 * 59.99760 * 1 2 3 31 31 H 1.09004 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47013 * 239.99938 * 2 1 3 33 33 H 1.08996 * 109.46910 * 120.00755 * 2 1 3 34 34 H 1.08995 * 109.47180 * 30.00394 * 4 3 2 35 35 H 1.08998 * 109.46909 * 150.00307 * 4 3 2 36 36 H 1.08998 * 109.47518 * 300.00293 * 5 4 3 37 37 H 1.08998 * 109.47049 * 60.00104 * 5 4 3 38 38 H 0.97001 * 119.99816 * 0.02562 * 6 5 4 39 39 H 0.97000 * 119.99529 * 180.02562 * 10 9 7 40 40 H 1.07998 * 126.58124 * 0.02562 * 18 17 15 41 41 H 1.08990 * 109.47472 * 245.00419 * 20 19 18 42 42 H 1.09004 * 109.46467 * 5.00458 * 20 19 18 43 43 H 1.09000 * 110.90585 * 338.64398 * 23 21 20 44 44 H 1.08999 * 110.90621 * 102.25055 * 23 21 20 45 45 H 1.09001 * 110.61538 * 278.52234 * 24 23 21 46 46 H 1.08995 * 110.74987 * 155.59075 * 24 23 21 47 47 H 1.09001 * 109.87529 * 267.08427 * 26 25 24 48 48 H 1.08996 * 109.99980 * 146.00571 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3993 2.0235 -1.2604 5 6 3.8829 1.7694 -1.5343 6 7 4.2637 2.4112 -2.7950 7 6 5.5523 2.3181 -3.2489 8 1 6.2880 1.7719 -2.6772 9 6 5.9131 2.9267 -4.4432 10 7 7.1519 2.8377 -4.8792 11 14 4.6407 3.8720 -5.4315 12 1 4.6324 5.2923 -4.9980 13 1 4.9799 3.7971 -6.8753 14 1 3.2984 3.2781 -5.2070 15 6 2.1173 2.0609 1.1596 16 8 2.4546 3.2291 1.1527 17 6 1.8163 1.3877 2.4372 18 6 1.9936 1.9212 3.6821 19 7 1.5997 0.9847 4.5682 20 6 1.6085 1.1050 6.0283 21 6 0.2083 0.8150 6.5723 22 1 -0.5242 1.4769 6.1105 23 6 0.1836 0.9658 8.1129 24 6 -0.7071 -0.2279 8.5418 25 8 -0.3346 -1.2746 7.6198 26 6 -0.1693 -0.6594 6.3311 27 7 1.1810 -0.1273 3.8237 28 7 1.3171 0.1472 2.5731 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8035 1.6094 -2.0738 35 1 2.2215 3.0965 -1.1896 36 1 4.4788 2.1835 -0.7210 37 1 4.0607 0.6964 -1.6052 38 1 3.6030 2.9021 -3.3083 39 1 7.4041 3.2632 -5.7136 40 1 2.3760 2.9046 3.9124 41 1 2.3165 0.3903 6.4475 42 1 1.9046 2.1163 6.3076 43 1 1.1867 0.8719 8.5291 44 1 -0.2696 1.9135 8.4037 45 1 -1.7625 0.0220 8.4327 46 1 -0.4882 -0.5241 9.5677 47 1 -1.1026 -0.7161 5.7709 48 1 0.6256 -1.1599 5.7783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716247845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:46 Heat of formation + Delta-G solvation = 22.780248 kcal Electronic energy + Delta-G solvation = -29086.001375 eV Core-core repulsion = 24985.516739 eV Total energy + Delta-G solvation = -4100.484636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.32678 -40.82145 -40.36442 -37.63620 -36.64292 -36.13340 -33.83589 -33.30234 -32.15190 -31.65281 -30.42453 -29.42768 -27.64179 -25.92061 -24.70854 -24.00992 -23.74597 -23.07436 -22.81782 -21.73977 -20.60922 -19.64505 -18.59385 -17.58709 -17.57770 -17.34459 -17.30329 -16.67882 -16.51103 -16.21293 -15.93388 -15.77171 -15.39181 -15.33151 -15.05085 -14.75099 -14.66459 -14.59026 -14.15160 -13.82188 -13.66843 -13.39146 -13.18360 -13.00353 -12.87028 -12.76789 -12.66677 -12.47534 -12.35484 -12.31811 -12.08952 -12.07319 -11.82733 -11.81758 -11.64342 -11.26484 -11.08270 -11.00778 -10.67184 -10.36247 -9.72653 -9.35991 -8.04296 -5.40129 0.12824 0.61160 1.04798 1.38876 1.43916 1.50676 1.86338 2.19572 2.48519 2.96070 3.08544 3.23721 3.26668 3.40935 3.61614 3.68964 3.74020 3.92705 3.96740 4.07318 4.15634 4.17379 4.21372 4.24521 4.31348 4.41566 4.48447 4.49421 4.55318 4.59652 4.68868 4.79923 4.84378 4.87747 4.91437 4.98664 5.03252 5.07821 5.12183 5.16272 5.39794 5.44875 5.54154 5.72072 5.90047 6.18272 6.30263 6.83940 7.03653 7.08578 7.77087 7.99270 9.16918 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028957 B = 0.001998 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.704470 B =14008.057030 C =14362.211863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.097 3.903 3 N -0.593 5.593 4 C 0.118 3.882 5 C 0.150 3.850 6 N -0.753 5.753 7 C -0.242 4.242 8 H 0.052 0.948 9 C -0.063 4.063 10 N -0.982 5.982 11 Si 0.960 3.040 12 H -0.279 1.279 13 H -0.292 1.292 14 H -0.245 1.245 15 C 0.596 3.404 16 O -0.571 6.571 17 C -0.122 4.122 18 C 0.113 3.887 19 N -0.349 5.349 20 C 0.121 3.879 21 C -0.130 4.130 22 H 0.093 0.907 23 C -0.135 4.135 24 C 0.034 3.966 25 O -0.406 6.406 26 C 0.049 3.951 27 N -0.085 5.085 28 N -0.207 5.207 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.008 0.992 37 H 0.030 0.970 38 H 0.369 0.631 39 H 0.260 0.740 40 H 0.233 0.767 41 H 0.113 0.887 42 H 0.150 0.850 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.048 0.952 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.119 -4.181 30.915 37.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 N -0.323 5.323 4 C -0.005 4.005 5 C 0.023 3.977 6 N -0.400 5.400 7 C -0.373 4.373 8 H 0.070 0.930 9 C -0.254 4.254 10 N -0.632 5.632 11 Si 0.786 3.214 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.170 1.170 15 C 0.384 3.616 16 O -0.450 6.450 17 C -0.261 4.261 18 C -0.045 4.045 19 N -0.134 5.134 20 C 0.002 3.998 21 C -0.150 4.150 22 H 0.112 0.888 23 C -0.173 4.173 24 C -0.042 4.042 25 O -0.325 6.325 26 C -0.028 4.028 27 N -0.065 5.065 28 N -0.081 5.081 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.026 0.974 37 H 0.048 0.952 38 H 0.203 0.797 39 H 0.068 0.932 40 H 0.250 0.750 41 H 0.131 0.869 42 H 0.167 0.833 43 H 0.116 0.884 44 H 0.127 0.873 45 H 0.082 0.918 46 H 0.126 0.874 47 H 0.066 0.934 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.281 -5.319 31.102 38.059 hybrid contribution 0.278 1.570 -1.069 1.919 sum -21.002 -3.749 30.033 36.840 Atomic orbital electron populations 1.21954 0.94462 1.02936 1.01076 1.22076 0.95661 0.80242 1.04553 1.47780 1.63317 1.15518 1.05726 1.21491 0.94332 0.99170 0.85536 1.20945 0.94280 0.95710 0.86804 1.42479 1.08262 1.65044 1.24186 1.18980 0.86856 1.27638 1.03778 0.93009 1.25580 0.98542 1.02093 0.99222 1.69897 1.18992 1.50573 1.23742 0.85339 0.79783 0.78799 0.77475 1.20475 1.21808 1.16961 1.17207 0.76585 0.85033 0.82824 1.90799 1.50125 1.16904 1.87150 1.21271 1.15656 0.94394 0.94812 1.23776 0.95596 0.97340 0.87751 1.50732 1.42461 1.10630 1.09552 1.22621 0.98729 1.07734 0.70676 1.22841 0.96457 0.97293 0.98380 0.88833 1.23158 1.02625 1.00293 0.91263 1.23808 0.98730 0.86841 0.94787 1.88895 1.90251 1.33765 1.19629 1.23310 1.01242 0.92756 0.85489 1.81871 1.20900 1.07540 0.96176 1.74762 1.10528 1.12384 1.10421 0.93643 0.92887 0.90006 0.89688 0.88107 0.87981 0.90481 0.97384 0.95233 0.79726 0.93156 0.75044 0.86899 0.83267 0.88370 0.87320 0.91813 0.87438 0.93384 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.71 71.98 0.70 -2.26 16 2 C 0.10 2.30 5.70 86.38 0.49 2.79 16 3 N -0.59 -17.34 2.49 -825.59 -2.05 -19.40 16 4 C 0.12 3.86 5.52 86.38 0.48 4.34 16 5 C 0.15 6.26 6.58 86.38 0.57 6.83 16 6 N -0.75 -37.20 5.41 -343.46 -1.86 -39.06 16 7 C -0.24 -14.49 10.47 84.03 0.88 -13.61 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 9 C -0.06 -3.81 5.50 84.86 0.47 -3.35 16 10 N -0.98 -64.39 13.97 21.65 0.30 -64.09 16 11 Si 0.96 46.22 27.73 68.60 1.90 48.12 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 14 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 15 C 0.60 18.22 7.62 86.69 0.66 18.88 16 16 O -0.57 -20.84 16.43 -4.01 -0.07 -20.91 16 17 C -0.12 -2.93 6.52 40.82 0.27 -2.67 16 18 C 0.11 1.81 11.28 83.85 0.95 2.76 16 19 N -0.35 -4.67 3.69 -347.11 -1.28 -5.95 16 20 C 0.12 0.57 5.73 86.38 0.49 1.06 16 21 C -0.13 -0.80 3.30 -9.80 -0.03 -0.84 16 22 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 23 C -0.14 -0.30 6.71 31.90 0.21 -0.08 16 24 C 0.03 0.25 7.72 72.67 0.56 0.81 16 25 O -0.41 -6.34 11.52 -148.98 -1.72 -8.06 16 26 C 0.05 0.66 6.59 72.35 0.48 1.13 16 27 N -0.08 -1.71 11.46 37.02 0.42 -1.28 16 28 N -0.21 -4.83 7.52 -49.99 -0.38 -5.21 16 29 H 0.04 1.01 7.00 -2.39 -0.02 0.99 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.08 1.91 8.02 -2.38 -0.02 1.89 16 33 H 0.10 2.47 5.32 -2.39 -0.01 2.46 16 34 H 0.10 2.87 8.07 -2.39 -0.02 2.85 16 35 H 0.08 2.69 7.37 -2.39 -0.02 2.68 16 36 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.37 16.96 5.53 -92.71 -0.51 16.45 16 39 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 40 H 0.23 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.15 -0.37 8.08 -2.38 -0.02 -0.39 16 43 H 0.10 0.00 7.87 -2.39 -0.02 -0.02 16 44 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.09 1.41 6.21 -2.39 -0.01 1.39 16 Total: -1.00 -82.90 389.22 2.85 -80.06 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.40 Total: 19.98 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 7.17 Total: 15.80 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -4.84 Total: -134.99 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.78 Total: -28.97 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.90 Total: 48.12 kcal Total: -82.90 2.85 -80.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716247845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.836 kcal (2) G-P(sol) polarization free energy of solvation -82.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds