Wall clock time and date at job start Tue Mar 31 2020 21:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00091 * 2 1 4 4 C 1.53001 * 109.47459 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47181 * 64.99896 * 4 3 2 6 6 C 1.36944 * 119.99797 * 270.00382 * 5 4 3 7 7 H 1.08005 * 119.99923 * 143.89721 * 6 5 4 8 8 C 1.38810 * 119.99985 * 323.89480 * 6 5 4 9 9 N 1.31621 * 119.99769 * 337.43695 * 8 6 5 10 10 Si 1.86797 * 120.00109 * 157.43780 * 8 6 5 11 11 H 1.48501 * 109.47256 * 90.00012 * 10 8 6 12 12 H 1.48501 * 109.47037 * 209.99959 * 10 8 6 13 13 H 1.48501 * 109.46946 * 330.00297 * 10 8 6 14 14 C 1.46494 * 120.00215 * 89.99849 * 5 4 3 15 15 C 1.53042 * 109.45924 * 114.79565 * 14 5 4 16 16 C 1.53197 * 109.31406 * 181.38942 * 15 14 5 17 17 N 1.46926 * 108.77186 * 305.35981 * 16 15 14 18 18 C 1.34773 * 120.63057 * 233.58363 * 17 16 15 19 19 O 1.21557 * 119.99970 * 355.08494 * 18 17 16 20 20 C 1.47804 * 120.00124 * 175.35534 * 18 17 16 21 21 C 1.40922 * 127.23753 * 185.52967 * 20 18 17 22 22 N 1.31135 * 105.77306 * 180.02562 * 21 20 18 23 23 N 1.28510 * 109.06103 * 359.97438 * 22 21 20 24 24 C 1.46502 * 124.44424 * 180.02562 * 23 22 21 25 25 N 1.28597 * 111.11624 * 359.72461 * 23 22 21 26 26 C 1.46924 * 118.73626 * 53.86240 * 17 16 15 27 27 C 1.53039 * 109.46377 * 234.85824 * 14 5 4 28 28 H 1.08996 * 109.46738 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47421 * 300.00237 * 1 2 3 30 30 H 1.09002 * 109.46793 * 60.00337 * 1 2 3 31 31 H 1.09003 * 109.47228 * 59.99679 * 3 2 1 32 32 H 1.09006 * 109.47072 * 300.00069 * 3 2 1 33 33 H 1.08997 * 109.46685 * 304.99548 * 4 3 2 34 34 H 1.09003 * 109.47084 * 184.99871 * 4 3 2 35 35 H 0.97005 * 119.99764 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.46092 * 354.82272 * 14 5 4 37 37 H 1.08996 * 109.50484 * 61.43416 * 15 14 5 38 38 H 1.09004 * 109.49981 * 301.33447 * 15 14 5 39 39 H 1.09003 * 109.58644 * 185.57278 * 16 15 14 40 40 H 1.09000 * 109.70204 * 65.21938 * 16 15 14 41 41 H 1.07992 * 127.11489 * 0.02681 * 21 20 18 42 42 H 1.08998 * 109.47023 * 90.02485 * 24 23 22 43 43 H 1.09003 * 109.47385 * 210.02594 * 24 23 22 44 44 H 1.08991 * 109.47039 * 330.02448 * 24 23 22 45 45 H 1.09006 * 109.58564 * 65.92855 * 26 17 16 46 46 H 1.08999 * 109.58666 * 186.34878 * 26 17 16 47 47 H 1.08992 * 109.50317 * 298.56926 * 27 14 5 48 48 H 1.09001 * 109.49487 * 58.66506 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0978 -0.7975 -1.3343 7 1 3.8458 -1.3067 -2.2528 8 6 4.5446 -1.5230 -0.2385 9 7 5.2570 -0.9311 0.6966 10 14 4.1348 -3.3395 -0.0911 11 1 5.2006 -4.1420 -0.7433 12 1 4.0432 -3.7114 1.3437 13 1 2.8349 -3.6093 -0.7564 14 6 4.2883 1.3998 -2.4129 15 6 5.7785 1.2818 -2.7409 16 6 6.1074 2.1837 -3.9348 17 7 5.2151 1.8369 -5.0493 18 6 5.7177 1.5310 -6.2618 19 8 6.9121 1.6267 -6.4664 20 6 4.8159 1.0849 -7.3446 21 6 5.1830 0.6268 -8.6257 22 7 4.0588 0.3448 -9.2392 23 7 3.0761 0.5906 -8.4484 24 6 1.6659 0.3938 -8.7931 25 7 3.4932 1.0259 -7.3125 26 6 3.7641 1.8360 -4.8185 27 6 3.4617 0.9328 -3.6132 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8507 0.5687 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.5695 -1.4382 1.4622 36 1 4.0470 2.4387 -2.1882 37 1 6.0155 0.2475 -2.9901 38 1 6.3668 1.5925 -1.8775 39 1 7.1439 2.0291 -4.2349 40 1 5.9588 3.2276 -3.6588 41 1 6.1833 0.5283 -9.0206 42 1 1.3629 -0.6172 -8.5208 43 1 1.0550 1.1149 -8.2499 44 1 1.5305 0.5375 -9.8650 45 1 3.4264 2.8516 -4.6115 46 1 3.2538 1.4520 -5.7018 47 1 3.7204 -0.0982 -3.8542 48 1 2.4008 0.9949 -3.3706 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716716355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:31 Heat of formation + Delta-G solvation = 78.063735 kcal Electronic energy + Delta-G solvation = -30793.882193 eV Core-core repulsion = 26695.794829 eV Total energy + Delta-G solvation = -4098.087364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.78652 -39.72839 -37.60352 -36.80697 -34.94442 -33.99950 -33.02491 -31.83894 -30.60787 -30.44431 -28.38117 -27.90679 -25.66339 -25.22742 -23.93597 -23.20941 -22.35331 -22.11874 -20.78909 -20.04295 -19.00482 -17.47519 -17.14495 -16.99379 -16.16556 -15.79184 -15.61423 -15.04022 -14.94663 -14.81883 -14.72971 -14.01549 -13.87296 -13.80800 -13.47215 -13.41523 -13.28356 -13.04634 -12.91210 -12.39080 -12.19968 -11.94119 -11.71351 -11.53943 -11.29883 -10.94732 -10.87055 -10.75243 -10.61136 -10.55107 -10.50934 -10.34072 -10.07165 -9.88594 -9.77037 -9.64621 -9.55336 -9.35889 -8.81489 -8.34216 -8.30637 -6.47567 -5.65936 -3.18561 1.22593 1.85677 1.97764 3.13630 3.35618 3.46574 3.53596 3.59352 3.79303 4.54643 4.60212 4.69437 4.70204 4.82260 4.93315 4.96420 5.26359 5.38164 5.48126 5.53007 5.61575 5.67906 5.71760 5.74199 5.78413 5.88240 5.93905 6.05113 6.06808 6.11986 6.16003 6.20046 6.32503 6.43554 6.51506 6.64000 6.68684 6.72125 6.79915 6.92125 7.17961 7.27567 7.58166 7.69890 7.95731 7.97898 8.09271 8.27971 8.64640 9.30134 9.95349 10.49388 11.36101 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.003574 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.728341 B = 7833.053148 C = 8274.314134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.047 3.953 4 C 0.142 3.858 5 N -0.572 5.572 6 C -0.232 4.232 7 H 0.055 0.945 8 C 0.018 3.982 9 N -0.892 5.892 10 Si 0.893 3.107 11 H -0.292 1.292 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.175 3.825 15 C -0.135 4.135 16 C 0.113 3.887 17 N -0.585 5.585 18 C 0.603 3.397 19 O -0.538 6.538 20 C -0.033 4.033 21 C 0.033 3.967 22 N -0.291 5.291 23 N -0.149 5.149 24 C 0.102 3.898 25 N -0.247 5.247 26 C 0.076 3.924 27 C -0.133 4.133 28 H 0.073 0.927 29 H 0.025 0.975 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.026 0.974 33 H 0.105 0.895 34 H 0.038 0.962 35 H 0.251 0.749 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.208 0.792 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.126 0.874 47 H 0.067 0.933 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 7.156 -13.864 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C -0.032 4.032 4 C 0.016 3.984 5 N -0.291 5.291 6 C -0.362 4.362 7 H 0.073 0.927 8 C -0.181 4.181 9 N -0.536 5.536 10 Si 0.723 3.277 11 H -0.219 1.219 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.068 3.932 15 C -0.175 4.175 16 C -0.010 4.010 17 N -0.317 5.317 18 C 0.388 3.612 19 O -0.414 6.414 20 C -0.195 4.195 21 C -0.150 4.150 22 N -0.131 5.131 23 N -0.051 5.051 24 C -0.037 4.037 25 N -0.095 5.095 26 C -0.048 4.048 27 C -0.172 4.172 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.122 0.878 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.224 0.776 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.078 0.922 46 H 0.143 0.857 47 H 0.086 0.914 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.864 6.779 -14.124 18.000 hybrid contribution 0.130 -0.681 0.505 0.858 sum -8.734 6.097 -13.619 17.290 Atomic orbital electron populations 1.22622 0.84432 1.01381 0.98309 1.88231 1.16372 1.27692 1.94786 1.23454 0.99037 0.84051 0.96644 1.21046 0.87366 0.96593 0.93423 1.43755 1.75110 1.02709 1.07490 1.18706 1.36957 0.81516 0.98993 0.92705 1.24940 0.96798 0.97271 0.99070 1.69967 1.35282 1.35825 1.12485 0.86470 0.78298 0.86164 0.76773 1.21934 1.21797 1.20518 1.20366 0.91480 0.93239 0.88142 1.22355 0.99524 1.00131 0.95465 1.21839 0.94382 0.98671 0.86064 1.47976 1.08567 1.65844 1.09288 1.16750 0.85977 0.77576 0.80927 1.90779 1.14524 1.54713 1.81416 1.23210 0.89720 1.08686 0.97894 1.24796 0.98282 1.00572 0.91384 1.73980 0.95665 1.20358 1.23138 1.48276 1.08694 1.42387 1.05700 1.22254 0.72598 1.04947 1.03931 1.74197 1.12619 1.16064 1.06580 1.22840 0.79369 1.00360 1.02215 1.22325 1.00462 0.99854 0.94601 0.90837 0.95613 0.95385 0.95938 0.95590 0.87792 0.94335 0.93904 0.93606 0.91034 0.90905 0.89593 0.91918 0.77559 0.88760 0.87571 0.87706 0.92204 0.85748 0.91383 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.62 10.18 -35.23 -0.36 -7.98 16 3 C 0.05 0.93 6.28 37.16 0.23 1.16 16 4 C 0.14 3.19 5.68 -4.04 -0.02 3.16 16 5 N -0.57 -13.26 2.35 -165.62 -0.39 -13.65 16 6 C -0.23 -6.10 7.89 -15.06 -0.12 -6.22 16 7 H 0.06 1.49 6.70 -52.48 -0.35 1.14 16 8 C 0.02 0.50 4.94 -17.43 -0.09 0.42 16 9 N -0.89 -25.30 11.44 55.49 0.63 -24.67 16 10 Si 0.89 22.32 29.61 -169.99 -5.03 17.28 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.18 3.40 2.58 -67.89 -0.18 3.22 16 15 C -0.13 -2.59 5.38 -26.61 -0.14 -2.73 16 16 C 0.11 1.83 6.42 -3.71 -0.02 1.81 16 17 N -0.59 -9.45 2.97 -173.63 -0.51 -9.96 16 18 C 0.60 10.05 7.70 -12.35 -0.10 9.95 16 19 O -0.54 -10.07 16.39 5.32 0.09 -9.98 16 20 C -0.03 -0.48 6.95 -82.68 -0.57 -1.05 16 21 C 0.03 0.42 12.05 -16.83 -0.20 0.21 16 22 N -0.29 -3.54 12.01 30.89 0.37 -3.17 16 23 N -0.15 -1.65 4.35 -16.64 -0.07 -1.72 16 24 C 0.10 0.58 11.55 59.85 0.69 1.27 16 25 N -0.25 -3.26 8.50 33.42 0.28 -2.98 16 26 C 0.08 1.13 6.36 -3.49 -0.02 1.11 16 27 C -0.13 -2.34 5.21 -26.39 -0.14 -2.47 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 2.72 5.45 -51.93 -0.28 2.44 16 34 H 0.04 0.79 7.97 -51.93 -0.41 0.38 16 35 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 36 H 0.05 0.83 7.84 -51.93 -0.41 0.42 16 37 H 0.07 1.59 7.82 -51.93 -0.41 1.18 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.09 1.44 7.03 -51.93 -0.37 1.08 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.21 2.13 8.06 -52.49 -0.42 1.70 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.13 1.77 3.73 -109.39 -0.41 1.36 16 47 H 0.07 1.38 6.90 -51.93 -0.36 1.02 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -33.04 386.63 -6.36 -39.39 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.62 Total: 0.17 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 0.43 Total: 11.45 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.31 Total: -56.15 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.27 Total: -17.96 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.04 -6.36 -39.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716716355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.457 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds