Wall clock time and date at job start Tue Mar 31 2020 21:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00091 * 2 1 4 4 C 1.53001 * 109.47459 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47181 * 64.99896 * 4 3 2 6 6 C 1.36944 * 119.99797 * 270.00382 * 5 4 3 7 7 H 1.08005 * 119.99923 * 143.89721 * 6 5 4 8 8 C 1.38810 * 119.99985 * 323.89480 * 6 5 4 9 9 N 1.31621 * 119.99769 * 337.43695 * 8 6 5 10 10 Si 1.86797 * 120.00109 * 157.43780 * 8 6 5 11 11 H 1.48501 * 109.47256 * 90.00012 * 10 8 6 12 12 H 1.48501 * 109.47037 * 209.99959 * 10 8 6 13 13 H 1.48501 * 109.46946 * 330.00297 * 10 8 6 14 14 C 1.46494 * 120.00215 * 89.99849 * 5 4 3 15 15 C 1.53042 * 109.45924 * 114.79565 * 14 5 4 16 16 C 1.53197 * 109.31406 * 181.38942 * 15 14 5 17 17 N 1.46926 * 108.77186 * 305.35981 * 16 15 14 18 18 C 1.34773 * 120.63057 * 233.58363 * 17 16 15 19 19 O 1.21557 * 119.99970 * 355.08494 * 18 17 16 20 20 C 1.47804 * 120.00124 * 175.35534 * 18 17 16 21 21 C 1.40922 * 127.23753 * 185.52967 * 20 18 17 22 22 N 1.31135 * 105.77306 * 180.02562 * 21 20 18 23 23 N 1.28510 * 109.06103 * 359.97438 * 22 21 20 24 24 C 1.46502 * 124.44424 * 180.02562 * 23 22 21 25 25 N 1.28597 * 111.11624 * 359.72461 * 23 22 21 26 26 C 1.46924 * 118.73626 * 53.86240 * 17 16 15 27 27 C 1.53039 * 109.46377 * 234.85824 * 14 5 4 28 28 H 1.08996 * 109.46738 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47421 * 300.00237 * 1 2 3 30 30 H 1.09002 * 109.46793 * 60.00337 * 1 2 3 31 31 H 1.09003 * 109.47228 * 59.99679 * 3 2 1 32 32 H 1.09006 * 109.47072 * 300.00069 * 3 2 1 33 33 H 1.08997 * 109.46685 * 304.99548 * 4 3 2 34 34 H 1.09003 * 109.47084 * 184.99871 * 4 3 2 35 35 H 0.97005 * 119.99764 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.46092 * 354.82272 * 14 5 4 37 37 H 1.08996 * 109.50484 * 61.43416 * 15 14 5 38 38 H 1.09004 * 109.49981 * 301.33447 * 15 14 5 39 39 H 1.09003 * 109.58644 * 185.57278 * 16 15 14 40 40 H 1.09000 * 109.70204 * 65.21938 * 16 15 14 41 41 H 1.07992 * 127.11489 * 0.02681 * 21 20 18 42 42 H 1.08998 * 109.47023 * 90.02485 * 24 23 22 43 43 H 1.09003 * 109.47385 * 210.02594 * 24 23 22 44 44 H 1.08991 * 109.47039 * 330.02448 * 24 23 22 45 45 H 1.09006 * 109.58564 * 65.92855 * 26 17 16 46 46 H 1.08999 * 109.58666 * 186.34878 * 26 17 16 47 47 H 1.08992 * 109.50317 * 298.56926 * 27 14 5 48 48 H 1.09001 * 109.49487 * 58.66506 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0978 -0.7975 -1.3343 7 1 3.8458 -1.3067 -2.2528 8 6 4.5446 -1.5230 -0.2385 9 7 5.2570 -0.9311 0.6966 10 14 4.1348 -3.3395 -0.0911 11 1 5.2006 -4.1420 -0.7433 12 1 4.0432 -3.7114 1.3437 13 1 2.8349 -3.6093 -0.7564 14 6 4.2883 1.3998 -2.4129 15 6 5.7785 1.2818 -2.7409 16 6 6.1074 2.1837 -3.9348 17 7 5.2151 1.8369 -5.0493 18 6 5.7177 1.5310 -6.2618 19 8 6.9121 1.6267 -6.4664 20 6 4.8159 1.0849 -7.3446 21 6 5.1830 0.6268 -8.6257 22 7 4.0588 0.3448 -9.2392 23 7 3.0761 0.5906 -8.4484 24 6 1.6659 0.3938 -8.7931 25 7 3.4932 1.0259 -7.3125 26 6 3.7641 1.8360 -4.8185 27 6 3.4617 0.9328 -3.6132 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8507 0.5687 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.5695 -1.4382 1.4622 36 1 4.0470 2.4387 -2.1882 37 1 6.0155 0.2475 -2.9901 38 1 6.3668 1.5925 -1.8775 39 1 7.1439 2.0291 -4.2349 40 1 5.9588 3.2276 -3.6588 41 1 6.1833 0.5283 -9.0206 42 1 1.3629 -0.6172 -8.5208 43 1 1.0550 1.1149 -8.2499 44 1 1.5305 0.5375 -9.8650 45 1 3.4264 2.8516 -4.6115 46 1 3.2538 1.4520 -5.7018 47 1 3.7204 -0.0982 -3.8542 48 1 2.4008 0.9949 -3.3706 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716716355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:29 Heat of formation + Delta-G solvation = 55.523466 kcal Electronic energy + Delta-G solvation = -30794.859612 eV Core-core repulsion = 26695.794829 eV Total energy + Delta-G solvation = -4099.064783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.73237 -41.05089 -39.15435 -38.27283 -36.55700 -34.86039 -34.14275 -33.50614 -32.22347 -31.84813 -29.81221 -28.91022 -27.13677 -26.65871 -25.39349 -24.59395 -23.70610 -23.07373 -22.29544 -21.59718 -20.40797 -18.48995 -18.34310 -18.02526 -17.82244 -17.27497 -16.95676 -16.62712 -16.51086 -16.12581 -15.79195 -15.65032 -15.49937 -15.17525 -15.08910 -14.59366 -14.42300 -13.88285 -13.71964 -13.62746 -13.57429 -13.39113 -13.24127 -12.99393 -12.82661 -12.70923 -12.57142 -12.39652 -12.22360 -12.09191 -11.92185 -11.68603 -11.56013 -11.46384 -11.36907 -11.22010 -10.87564 -10.47916 -10.35433 -10.27226 -9.64627 -8.42067 -7.69550 -5.23971 0.17301 0.87550 1.22869 1.43748 1.47557 1.56001 1.94376 2.15491 2.59542 2.82436 3.25782 3.41817 3.55775 3.64165 3.90591 4.08273 4.23543 4.28160 4.31822 4.33666 4.40130 4.45682 4.48302 4.49080 4.57052 4.66067 4.67834 4.68498 4.74055 4.80003 4.84570 4.85874 4.92602 4.95722 5.03328 5.08620 5.13380 5.24692 5.46048 5.60105 5.64603 5.79503 5.81713 5.90920 6.31673 6.54154 6.72891 6.91367 7.10622 7.32381 8.03015 8.50739 9.27143 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.003574 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.728341 B = 7833.053148 C = 8274.314134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.056 3.944 4 C 0.139 3.861 5 N -0.583 5.583 6 C -0.216 4.216 7 H 0.041 0.959 8 C -0.028 4.028 9 N -0.917 5.917 10 Si 0.934 3.066 11 H -0.294 1.294 12 H -0.296 1.296 13 H -0.279 1.279 14 C 0.171 3.829 15 C -0.122 4.122 16 C 0.122 3.878 17 N -0.590 5.590 18 C 0.601 3.399 19 O -0.566 6.566 20 C -0.061 4.061 21 C 0.029 3.971 22 N -0.294 5.294 23 N -0.135 5.135 24 C 0.085 3.915 25 N -0.250 5.250 26 C 0.085 3.915 27 C -0.118 4.118 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.244 0.756 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.223 0.777 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.086 0.914 46 H 0.136 0.864 47 H 0.034 0.966 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.779 8.579 -15.561 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.022 4.022 4 C 0.012 3.988 5 N -0.303 5.303 6 C -0.347 4.347 7 H 0.059 0.941 8 C -0.224 4.224 9 N -0.563 5.563 10 Si 0.765 3.235 11 H -0.222 1.222 12 H -0.222 1.222 13 H -0.205 1.205 14 C 0.065 3.935 15 C -0.163 4.163 16 C 0.000 4.000 17 N -0.320 5.320 18 C 0.387 3.613 19 O -0.445 6.445 20 C -0.221 4.221 21 C -0.153 4.153 22 N -0.135 5.135 23 N -0.039 5.039 24 C -0.052 4.052 25 N -0.099 5.099 26 C -0.038 4.038 27 C -0.158 4.158 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.239 0.761 42 H 0.126 0.874 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.104 0.896 46 H 0.153 0.847 47 H 0.053 0.947 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.306 8.212 -15.838 21.122 hybrid contribution 0.745 -1.124 0.945 1.647 sum -10.561 7.088 -14.893 19.585 Atomic orbital electron populations 1.22798 0.81766 1.02380 1.00065 1.88152 1.19429 1.28884 1.95176 1.23248 0.96697 0.83871 0.98400 1.20993 0.89764 0.96325 0.91687 1.43921 1.75464 1.02114 1.08769 1.18692 1.34757 0.83264 0.97956 0.94140 1.25381 0.97835 0.99589 0.99590 1.70072 1.36989 1.36384 1.12897 0.85795 0.77828 0.83652 0.76195 1.22210 1.22230 1.20482 1.20569 0.91575 0.93904 0.87481 1.22162 0.99454 0.98371 0.96282 1.21691 0.94153 0.99285 0.84879 1.48048 1.09064 1.65791 1.09142 1.17010 0.85954 0.76911 0.81399 1.90752 1.15800 1.55873 1.82054 1.22928 0.90192 1.10908 0.98077 1.25094 0.99312 1.00067 0.90797 1.74006 0.95747 1.20531 1.23182 1.48850 1.10153 1.40190 1.04720 1.22830 0.69986 1.06457 1.05921 1.74026 1.11970 1.16288 1.07612 1.22869 0.78663 1.01080 1.01195 1.22127 1.00202 0.98516 0.94962 0.90367 0.93659 0.93651 0.93760 0.93917 0.91626 0.92818 0.94645 0.91197 0.95042 0.92432 0.90397 0.89017 0.76086 0.87368 0.85585 0.85347 0.89570 0.84714 0.94736 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -16.66 10.18 -148.98 -1.52 -18.18 16 3 C 0.06 2.11 6.28 71.98 0.45 2.56 16 4 C 0.14 6.14 5.68 86.38 0.49 6.63 16 5 N -0.58 -27.07 2.35 -677.90 -1.60 -28.67 16 6 C -0.22 -11.57 7.89 84.03 0.66 -10.91 16 7 H 0.04 2.27 6.70 -2.91 -0.02 2.25 16 8 C -0.03 -1.56 4.94 84.86 0.42 -1.14 16 9 N -0.92 -53.70 11.44 21.65 0.25 -53.46 16 10 Si 0.93 46.93 29.61 68.60 2.03 48.96 16 11 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 12 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 13 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 14 C 0.17 6.49 2.58 45.02 0.12 6.60 16 15 C -0.12 -4.76 5.38 30.67 0.17 -4.60 16 16 C 0.12 3.88 6.42 86.36 0.55 4.44 16 17 N -0.59 -18.37 2.97 -821.51 -2.44 -20.81 16 18 C 0.60 19.71 7.70 86.77 0.67 20.38 16 19 O -0.57 -21.26 16.39 -3.89 -0.06 -21.33 16 20 C -0.06 -1.70 6.95 42.24 0.29 -1.41 16 21 C 0.03 0.71 12.05 85.45 1.03 1.74 16 22 N -0.29 -6.54 12.01 -56.17 -0.67 -7.21 16 23 N -0.14 -2.65 4.35 -206.54 -0.90 -3.55 16 24 C 0.09 0.67 11.55 127.77 1.48 2.15 16 25 N -0.25 -6.07 8.50 -48.17 -0.41 -6.48 16 26 C 0.09 2.33 6.36 86.51 0.55 2.88 16 27 C -0.12 -4.03 5.21 30.82 0.16 -3.86 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.07 3.50 5.45 -2.39 -0.01 3.48 16 34 H 0.05 2.15 7.97 -2.39 -0.02 2.13 16 35 H 0.24 14.11 8.31 -92.70 -0.77 13.34 16 36 H 0.07 2.34 7.84 -2.39 -0.02 2.32 16 37 H 0.03 1.45 7.82 -2.39 -0.02 1.43 16 38 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.08 2.62 7.03 -2.39 -0.02 2.61 16 40 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.22 4.37 8.06 -2.91 -0.02 4.34 16 42 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.13 0.44 8.14 -2.39 -0.02 0.43 16 45 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 46 H 0.14 3.51 3.73 -76.73 -0.29 3.23 16 47 H 0.03 1.40 6.90 -2.39 -0.02 1.38 16 48 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -73.75 386.63 3.66 -70.09 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.68 Total: 13.12 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 8.29 Total: 27.51 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -5.77 Total: -120.17 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.58 Total: -39.50 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -73.75 3.66 -70.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716716355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.613 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds