Wall clock time and date at job start Tue Mar 31 2020 20:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36341 * 126.19789 * 2 1 4 4 C 1.36247 * 106.88793 * 179.97438 * 3 2 1 5 5 C 1.47256 * 126.16378 * 180.02562 * 4 3 2 6 6 O 1.21632 * 119.99813 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99881 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00258 * 179.97438 * 7 5 4 9 9 C 1.52993 * 109.47551 * 180.02562 * 8 7 5 10 10 N 1.46896 * 109.47372 * 180.02562 * 9 8 7 11 11 C 1.46849 * 111.00014 * 45.79383 * 10 9 8 12 12 C 1.53034 * 109.52496 * 185.84056 * 11 10 9 13 13 C 1.53123 * 109.27728 * 300.82002 * 12 11 10 14 14 N 1.46497 * 109.57307 * 177.59357 * 13 12 11 15 15 C 1.36934 * 120.00414 * 85.28683 * 14 13 12 16 16 H 1.08000 * 119.99896 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00086 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00170 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99860 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47200 * 59.99494 * 19 17 15 21 21 H 1.48494 * 109.46932 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46754 * 299.99240 * 19 17 15 23 23 C 1.53116 * 109.16113 * 57.65222 * 13 12 11 24 24 C 1.46847 * 111.00262 * 170.00315 * 10 9 8 25 25 N 1.36031 * 107.67101 * 0.26423 * 4 3 2 26 26 C 1.30700 * 108.94208 * 359.55686 * 25 4 3 27 27 O 1.35458 * 125.55226 * 180.18691 * 26 25 4 28 28 H 1.09001 * 109.47355 * 89.99714 * 1 2 3 29 29 H 1.09000 * 109.47291 * 209.99506 * 1 2 3 30 30 H 1.09000 * 109.47700 * 330.00038 * 1 2 3 31 31 H 1.08002 * 126.55478 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00047 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47024 * 300.00478 * 8 7 5 34 34 H 1.09004 * 109.46875 * 60.00324 * 8 7 5 35 35 H 1.09000 * 109.47250 * 300.00222 * 9 8 7 36 36 H 1.09004 * 109.46862 * 60.00198 * 9 8 7 37 37 H 1.09004 * 109.45984 * 305.85494 * 11 10 9 38 38 H 1.08999 * 109.46111 * 65.82147 * 11 10 9 39 39 H 1.08997 * 109.50502 * 180.87470 * 12 11 10 40 40 H 1.09000 * 109.50690 * 60.75802 * 12 11 10 41 41 H 1.09001 * 109.52190 * 297.75011 * 13 12 11 42 42 H 0.97010 * 119.99867 * 265.27843 * 14 13 12 43 43 H 0.96998 * 119.99792 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.50121 * 182.40402 * 23 13 12 45 45 H 1.08998 * 109.50353 * 62.29022 * 23 13 12 46 46 H 1.09001 * 109.46338 * 294.17917 * 24 10 9 47 47 H 1.09001 * 109.46665 * 54.15463 * 24 10 9 48 48 H 0.96705 * 113.99984 * 270.29718 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2701 1.1002 0.0000 4 6 3.5560 0.6497 0.0006 5 6 4.7691 1.4843 0.0013 6 8 4.6731 2.6969 0.0019 7 7 5.9859 0.9046 0.0024 8 6 7.1929 1.7349 0.0026 9 6 8.4306 0.8356 0.0032 10 7 9.6408 1.6681 0.0040 11 6 9.5321 2.7538 0.9868 12 6 10.7417 3.6825 0.8589 13 6 12.0232 2.8792 1.0977 14 7 13.1882 3.7495 0.9203 15 6 13.6372 4.5138 1.9640 16 1 13.1322 4.4753 2.9179 17 6 14.7408 5.3389 1.7957 18 7 15.3560 5.3862 0.6331 19 14 15.3529 6.3820 3.2194 20 1 15.7337 5.4999 4.3516 21 1 16.5358 7.1674 2.7848 22 1 14.2759 7.3076 3.6536 23 6 12.0881 1.7259 0.0926 24 6 10.8395 0.8540 0.2426 25 7 3.5171 -0.7100 -0.0050 26 6 2.2692 -1.0988 0.0006 27 8 1.8451 -2.3853 0.0011 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9499 2.1317 0.0004 32 1 6.0624 -0.0623 0.0023 33 1 7.2015 2.3636 -0.8878 34 1 7.2005 2.3646 0.8922 35 1 8.4222 0.2065 0.8933 36 1 8.4227 0.2061 -0.8867 37 1 8.6187 3.3197 0.8032 38 1 9.5023 2.3324 1.9916 39 1 10.6685 4.4794 1.5989 40 1 10.7644 4.1149 -0.1413 41 1 12.0186 2.4788 2.1115 42 1 13.6417 3.7843 0.0634 43 1 16.1273 5.9624 0.5156 44 1 12.9770 1.1250 0.2851 45 1 12.1320 2.1276 -0.9198 46 1 10.8036 0.4415 1.2509 47 1 10.8759 0.0402 -0.4816 48 1 1.7220 -2.7592 -0.8822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717017899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:01 Heat of formation + Delta-G solvation = 11.235781 kcal Electronic energy + Delta-G solvation = -28197.737929 eV Core-core repulsion = 24096.752687 eV Total energy + Delta-G solvation = -4100.985241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.68911 -39.67362 -38.74254 -37.82574 -35.70795 -34.79079 -34.25572 -32.21381 -30.54332 -29.97267 -29.54708 -28.26330 -27.19996 -24.54858 -23.46936 -23.17308 -22.05462 -21.82205 -20.91552 -20.48040 -19.24378 -19.06393 -17.95338 -17.00619 -16.86426 -16.36687 -16.18516 -15.67112 -15.33452 -15.02045 -14.85751 -14.62265 -14.52222 -14.34411 -13.85803 -13.63002 -13.46233 -13.43441 -13.27345 -13.01856 -12.78447 -12.51517 -12.35355 -11.80026 -11.50898 -11.42732 -11.11206 -10.86112 -10.80998 -10.67700 -10.51440 -10.37444 -10.29220 -10.16674 -10.13264 -9.64945 -9.51008 -9.25445 -8.95799 -8.78985 -8.14377 -6.87201 -5.69428 -2.97557 1.05039 1.60123 1.85350 2.83071 3.19212 3.31533 3.48765 3.52992 3.54032 4.03073 4.07838 4.18648 4.40358 4.61457 4.65031 4.71199 4.75636 4.93605 5.00475 5.28696 5.30944 5.35392 5.44035 5.51133 5.66507 5.67931 5.73291 5.77305 5.85446 5.89865 5.94631 5.98284 6.13170 6.23586 6.25039 6.36740 6.56554 6.59817 6.74627 6.92776 6.96559 7.06056 7.17848 7.31046 7.34221 7.43705 7.76049 8.05338 8.49510 9.60323 10.19710 10.54688 11.53280 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028966 B = 0.001637 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.416851 B =17096.964747 C =17681.851937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.464 5.464 3 C 0.046 3.954 4 C -0.046 4.046 5 C 0.604 3.396 6 O -0.539 6.539 7 N -0.714 5.714 8 C 0.114 3.886 9 C 0.045 3.955 10 N -0.531 5.531 11 C 0.049 3.951 12 C -0.132 4.132 13 C 0.177 3.823 14 N -0.724 5.724 15 C -0.237 4.237 16 H 0.068 0.932 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.121 4.121 24 C 0.064 3.936 25 N -0.455 5.455 26 C 0.379 3.621 27 O -0.439 6.439 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.197 0.803 32 H 0.408 0.592 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.029 0.971 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.098 -16.652 -4.500 37.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.158 5.158 3 C -0.092 4.092 4 C -0.175 4.175 5 C 0.390 3.610 6 O -0.416 6.416 7 N -0.365 5.365 8 C -0.009 4.009 9 C -0.083 4.083 10 N -0.257 5.257 11 C -0.079 4.079 12 C -0.172 4.172 13 C 0.067 3.933 14 N -0.364 5.364 15 C -0.368 4.368 16 H 0.086 0.914 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.159 4.159 24 C -0.064 4.064 25 N -0.186 5.186 26 C 0.077 3.923 27 O -0.240 6.240 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.214 0.786 32 H 0.243 0.757 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.088 0.912 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -32.473 -16.065 -4.196 36.472 hybrid contribution -0.459 0.049 0.796 0.920 sum -32.932 -16.017 -3.399 36.778 Atomic orbital electron populations 1.22177 0.75553 1.05610 1.04187 1.45847 1.08515 1.06549 1.54925 1.22699 0.89673 0.92572 1.04237 1.20414 0.93583 0.89458 1.14074 1.16743 0.81782 0.86277 0.76244 1.90841 1.86709 1.13151 1.50896 1.45715 1.05194 1.11087 1.74499 1.21592 0.82242 0.93508 1.03551 1.22216 0.89493 0.95280 1.01314 1.61989 1.01237 1.11655 1.50790 1.22323 1.00126 0.93021 0.92444 1.22306 0.94445 0.98084 1.02396 1.20242 0.87469 0.89661 0.95927 1.42412 1.31304 1.49339 1.13386 1.19206 1.08847 1.16910 0.91864 0.91358 1.24728 0.98714 1.00667 0.96919 1.69655 1.23189 1.42774 1.22590 0.86288 0.78061 0.80248 0.81723 1.21381 1.21739 1.21329 1.21855 0.95546 0.97383 1.01164 1.22054 0.89937 0.95327 0.99097 1.70852 1.16931 1.11007 1.19765 1.20264 0.84091 0.81522 1.06386 1.84909 1.86703 1.18078 1.34283 0.89925 0.88789 0.88823 0.78590 0.75716 0.90143 0.90656 0.94426 0.90212 0.90773 0.95274 0.91746 0.91652 0.94119 0.78253 0.93548 0.91525 0.91268 0.95049 0.91211 0.73996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.09 11.11 59.84 0.66 0.75 16 2 N -0.46 -2.69 3.16 -125.78 -0.40 -3.09 16 3 C 0.05 0.35 11.29 -16.26 -0.18 0.17 16 4 C -0.05 -0.48 6.97 -83.06 -0.58 -1.06 16 5 C 0.60 7.49 7.81 -12.60 -0.10 7.40 16 6 O -0.54 -8.20 16.88 5.25 0.09 -8.12 16 7 N -0.71 -7.81 5.55 -61.44 -0.34 -8.15 16 8 C 0.11 1.34 4.92 -4.05 -0.02 1.32 16 9 C 0.05 0.51 5.39 -3.83 -0.02 0.49 16 10 N -0.53 -7.42 4.81 -234.68 -1.13 -8.55 16 11 C 0.05 0.74 4.85 -3.83 -0.02 0.73 16 12 C -0.13 -2.47 5.68 -26.65 -0.15 -2.62 16 13 C 0.18 3.63 2.84 -67.81 -0.19 3.44 16 14 N -0.72 -18.61 5.13 -53.31 -0.27 -18.89 16 15 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 19 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C -0.12 -2.08 5.57 -26.66 -0.15 -2.23 16 24 C 0.06 0.90 5.42 -3.84 -0.02 0.88 16 25 N -0.46 -4.65 11.03 -11.22 -0.12 -4.77 16 26 C 0.38 2.93 9.03 -89.17 -0.81 2.12 16 27 O -0.44 -2.30 13.55 -18.07 -0.24 -2.55 16 28 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 29 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.41 3.87 8.18 -40.82 -0.33 3.54 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.96 6.21 -51.93 -0.32 0.64 16 35 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.06 5.81 -51.93 -0.30 0.76 16 38 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 42 H 0.38 10.49 7.80 -40.82 -0.32 10.17 16 43 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 48 H 0.40 0.04 9.06 45.56 0.41 0.45 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -36.53 395.44 -9.32 -45.85 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.74 Total: 8.48 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.82 Total: 3.98 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -1.54 Total: -71.42 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.16 Total: -10.66 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.53 -9.32 -45.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717017899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.090 kcal (2) G-P(sol) polarization free energy of solvation -36.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds