Wall clock time and date at job start Tue Mar 31 2020 20:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36341 * 126.19789 * 2 1 4 4 C 1.36247 * 106.88793 * 179.97438 * 3 2 1 5 5 C 1.47256 * 126.16378 * 180.02562 * 4 3 2 6 6 O 1.21632 * 119.99813 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99881 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00258 * 179.97438 * 7 5 4 9 9 C 1.52993 * 109.47551 * 180.02562 * 8 7 5 10 10 N 1.46896 * 109.47372 * 180.02562 * 9 8 7 11 11 C 1.46849 * 111.00014 * 45.79383 * 10 9 8 12 12 C 1.53034 * 109.52496 * 185.84056 * 11 10 9 13 13 C 1.53123 * 109.27728 * 300.82002 * 12 11 10 14 14 N 1.46497 * 109.57307 * 177.59357 * 13 12 11 15 15 C 1.36934 * 120.00414 * 85.28683 * 14 13 12 16 16 H 1.08000 * 119.99896 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00086 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00170 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99860 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47200 * 59.99494 * 19 17 15 21 21 H 1.48494 * 109.46932 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46754 * 299.99240 * 19 17 15 23 23 C 1.53116 * 109.16113 * 57.65222 * 13 12 11 24 24 C 1.46847 * 111.00262 * 170.00315 * 10 9 8 25 25 N 1.36031 * 107.67101 * 0.26423 * 4 3 2 26 26 C 1.30700 * 108.94208 * 359.55686 * 25 4 3 27 27 O 1.35458 * 125.55226 * 180.18691 * 26 25 4 28 28 H 1.09001 * 109.47355 * 89.99714 * 1 2 3 29 29 H 1.09000 * 109.47291 * 209.99506 * 1 2 3 30 30 H 1.09000 * 109.47700 * 330.00038 * 1 2 3 31 31 H 1.08002 * 126.55478 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00047 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47024 * 300.00478 * 8 7 5 34 34 H 1.09004 * 109.46875 * 60.00324 * 8 7 5 35 35 H 1.09000 * 109.47250 * 300.00222 * 9 8 7 36 36 H 1.09004 * 109.46862 * 60.00198 * 9 8 7 37 37 H 1.09004 * 109.45984 * 305.85494 * 11 10 9 38 38 H 1.08999 * 109.46111 * 65.82147 * 11 10 9 39 39 H 1.08997 * 109.50502 * 180.87470 * 12 11 10 40 40 H 1.09000 * 109.50690 * 60.75802 * 12 11 10 41 41 H 1.09001 * 109.52190 * 297.75011 * 13 12 11 42 42 H 0.97010 * 119.99867 * 265.27843 * 14 13 12 43 43 H 0.96998 * 119.99792 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.50121 * 182.40402 * 23 13 12 45 45 H 1.08998 * 109.50353 * 62.29022 * 23 13 12 46 46 H 1.09001 * 109.46338 * 294.17917 * 24 10 9 47 47 H 1.09001 * 109.46665 * 54.15463 * 24 10 9 48 48 H 0.96705 * 113.99984 * 270.29718 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2701 1.1002 0.0000 4 6 3.5560 0.6497 0.0006 5 6 4.7691 1.4843 0.0013 6 8 4.6731 2.6969 0.0019 7 7 5.9859 0.9046 0.0024 8 6 7.1929 1.7349 0.0026 9 6 8.4306 0.8356 0.0032 10 7 9.6408 1.6681 0.0040 11 6 9.5321 2.7538 0.9868 12 6 10.7417 3.6825 0.8589 13 6 12.0232 2.8792 1.0977 14 7 13.1882 3.7495 0.9203 15 6 13.6372 4.5138 1.9640 16 1 13.1322 4.4753 2.9179 17 6 14.7408 5.3389 1.7957 18 7 15.3560 5.3862 0.6331 19 14 15.3529 6.3820 3.2194 20 1 15.7337 5.4999 4.3516 21 1 16.5358 7.1674 2.7848 22 1 14.2759 7.3076 3.6536 23 6 12.0881 1.7259 0.0926 24 6 10.8395 0.8540 0.2426 25 7 3.5171 -0.7100 -0.0050 26 6 2.2692 -1.0988 0.0006 27 8 1.8451 -2.3853 0.0011 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9499 2.1317 0.0004 32 1 6.0624 -0.0623 0.0023 33 1 7.2015 2.3636 -0.8878 34 1 7.2005 2.3646 0.8922 35 1 8.4222 0.2065 0.8933 36 1 8.4227 0.2061 -0.8867 37 1 8.6187 3.3197 0.8032 38 1 9.5023 2.3324 1.9916 39 1 10.6685 4.4794 1.5989 40 1 10.7644 4.1149 -0.1413 41 1 12.0186 2.4788 2.1115 42 1 13.6417 3.7843 0.0634 43 1 16.1273 5.9624 0.5156 44 1 12.9770 1.1250 0.2851 45 1 12.1320 2.1276 -0.9198 46 1 10.8036 0.4415 1.2509 47 1 10.8759 0.0402 -0.4816 48 1 1.7220 -2.7592 -0.8822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717017899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:00 Heat of formation + Delta-G solvation = -20.875321 kcal Electronic energy + Delta-G solvation = -28199.130371 eV Core-core repulsion = 24096.752687 eV Total energy + Delta-G solvation = -4102.377683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.23106 -40.65111 -39.95075 -38.26077 -37.10118 -35.74051 -35.16050 -33.95215 -31.89777 -31.48824 -30.33226 -29.19233 -27.87525 -26.13576 -24.76917 -24.26332 -23.26889 -22.45971 -22.09104 -21.28884 -20.71816 -19.54710 -19.08021 -18.60899 -17.58842 -17.29793 -16.81381 -16.71556 -16.51749 -16.14675 -15.79289 -15.53353 -15.45929 -15.31005 -15.26990 -15.19134 -14.75559 -14.47428 -14.14856 -13.96049 -13.56935 -13.51022 -13.11352 -12.98386 -12.93253 -12.83908 -12.65368 -12.49035 -12.20925 -12.19365 -12.02955 -11.74631 -11.56505 -11.48980 -11.17891 -11.12288 -10.85277 -10.82449 -10.16676 -9.58184 -9.25174 -8.97657 -7.92291 -5.20572 0.44470 1.03787 1.39183 1.46805 1.50058 1.56079 2.03419 2.39849 2.57281 2.74505 3.09506 3.40090 3.60041 3.75242 3.81622 3.84164 4.02781 4.08179 4.11383 4.21898 4.35072 4.36437 4.38982 4.41176 4.50516 4.57229 4.71032 4.72238 4.76414 4.85541 4.88991 4.94451 4.98018 4.99342 5.13749 5.21060 5.21950 5.38429 5.45220 5.50796 5.61942 5.62638 6.11638 6.16044 6.30119 6.36417 6.61110 6.69723 7.17920 7.35446 8.12775 8.36454 9.31059 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028966 B = 0.001637 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.416851 B =17096.964747 C =17681.851937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.455 5.455 3 C 0.059 3.941 4 C -0.081 4.081 5 C 0.601 3.399 6 O -0.577 6.577 7 N -0.706 5.706 8 C 0.121 3.879 9 C 0.054 3.946 10 N -0.541 5.541 11 C 0.060 3.940 12 C -0.122 4.122 13 C 0.171 3.829 14 N -0.737 5.737 15 C -0.240 4.240 16 H 0.072 0.928 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.972 3.028 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.280 1.280 23 C -0.112 4.112 24 C 0.071 3.929 25 N -0.486 5.486 26 C 0.380 3.620 27 O -0.442 6.442 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.215 0.785 32 H 0.416 0.584 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.035 0.965 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.039 0.961 47 H 0.097 0.903 48 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.687 -18.433 -4.060 40.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.149 5.149 3 C -0.081 4.081 4 C -0.209 4.209 5 C 0.388 3.612 6 O -0.457 6.457 7 N -0.357 5.357 8 C -0.003 4.003 9 C -0.074 4.074 10 N -0.267 5.267 11 C -0.068 4.068 12 C -0.163 4.163 13 C 0.062 3.938 14 N -0.377 5.377 15 C -0.372 4.372 16 H 0.090 0.910 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.801 3.199 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.206 1.206 23 C -0.151 4.151 24 C -0.057 4.057 25 N -0.217 5.217 26 C 0.077 3.923 27 O -0.246 6.246 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.232 0.768 32 H 0.252 0.748 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.204 0.796 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.115 0.885 48 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -35.130 -17.926 -3.754 39.618 hybrid contribution 0.191 0.491 0.629 0.820 sum -34.940 -17.436 -3.124 39.173 Atomic orbital electron populations 1.22542 0.72722 1.06895 1.05930 1.46050 1.10036 1.05377 1.53390 1.22998 0.89109 0.93729 1.02263 1.20226 0.93723 0.89799 1.17152 1.17075 0.82628 0.86077 0.75388 1.90806 1.87310 1.14693 1.52890 1.45624 1.04714 1.11382 1.73945 1.21425 0.82963 0.93565 1.02326 1.22198 0.87570 0.94755 1.02836 1.61927 1.02440 1.12055 1.50278 1.22134 0.98379 0.93053 0.93238 1.22097 0.95392 0.98118 1.00687 1.20490 0.86338 0.90225 0.96702 1.42628 1.32771 1.49966 1.12287 1.19582 1.08511 1.16573 0.92543 0.90972 1.25544 0.99379 1.02470 0.99476 1.69817 1.23723 1.43895 1.24614 0.85235 0.77262 0.78585 0.78834 1.20385 1.22094 1.20613 1.21736 0.97570 0.96478 0.99315 1.22004 0.88179 0.95012 1.00494 1.70729 1.18767 1.10923 1.21249 1.20345 0.83978 0.82562 1.05371 1.84873 1.86379 1.16958 1.36376 0.87926 0.87852 0.87268 0.76805 0.74760 0.91492 0.91850 0.93064 0.88342 0.89890 0.94670 0.93659 0.93280 0.94703 0.79642 0.94096 0.91672 0.92237 0.94239 0.88452 0.71375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.02 11.11 127.77 1.42 1.40 16 2 N -0.46 -4.28 3.16 -662.76 -2.09 -6.37 16 3 C 0.06 0.82 11.29 83.53 0.94 1.76 16 4 C -0.08 -1.65 6.97 40.40 0.28 -1.37 16 5 C 0.60 14.92 7.81 86.61 0.68 15.59 16 6 O -0.58 -17.85 16.88 -4.13 -0.07 -17.92 16 7 N -0.71 -15.01 5.55 -466.54 -2.59 -17.60 16 8 C 0.12 2.73 4.92 86.38 0.43 3.15 16 9 C 0.05 1.08 5.39 86.30 0.46 1.55 16 10 N -0.54 -14.15 4.81 -896.39 -4.31 -18.46 16 11 C 0.06 1.78 4.85 86.32 0.42 2.20 16 12 C -0.12 -4.67 5.68 30.65 0.17 -4.49 16 13 C 0.17 7.07 2.84 45.07 0.13 7.20 16 14 N -0.74 -38.82 5.13 -322.56 -1.65 -40.47 16 15 C -0.24 -13.82 9.93 84.03 0.83 -12.98 16 16 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 17 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 18 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 19 Si 0.97 47.48 29.55 68.60 2.03 49.50 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 23 C -0.11 -3.80 5.57 30.64 0.17 -3.63 16 24 C 0.07 1.83 5.42 86.32 0.47 2.30 16 25 N -0.49 -9.46 11.03 -303.16 -3.34 -12.80 16 26 C 0.38 5.21 9.03 179.84 1.62 6.83 16 27 O -0.44 -3.66 13.55 -87.56 -1.19 -4.84 16 28 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.22 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.42 7.45 8.18 -92.71 -0.76 6.69 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.59 6.21 -2.38 -0.01 1.57 16 35 H 0.05 0.93 8.08 -2.39 -0.02 0.91 16 36 H 0.10 1.66 8.14 -2.38 -0.02 1.65 16 37 H 0.08 2.34 5.81 -2.38 -0.01 2.32 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.03 1.48 8.08 -2.39 -0.02 1.46 16 42 H 0.37 21.02 7.80 -92.70 -0.72 20.30 16 43 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.10 2.04 8.12 -2.39 -0.02 2.02 16 48 H 0.43 -0.95 9.06 -74.05 -0.67 -1.62 16 Total: -1.00 -80.63 395.44 -5.59 -86.22 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: -1.15 Total: 27.99 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 8.50 Total: 15.44 kcal Atomic # 7 Polarization: -142.68 SS G_CDS: -13.71 Total: -156.38 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.26 Total: -22.76 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -80.63 -5.59 -86.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717017899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.341 kcal (2) G-P(sol) polarization free energy of solvation -80.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds