Wall clock time and date at job start Tue Mar 31 2020 21:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.52997 * 109.47503 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47212 * 180.02562 * 4 3 2 6 6 C 1.34814 * 126.59180 * 124.71228 * 5 4 3 7 7 C 1.36596 * 106.83649 * 179.85319 * 6 5 4 8 8 C 1.47525 * 125.76816 * 180.17992 * 7 6 5 9 9 O 1.21593 * 120.00268 * 0.30526 * 8 7 6 10 10 N 1.34774 * 119.99611 * 180.30155 * 8 7 6 11 11 C 1.46499 * 119.99901 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.43788 * 327.54524 * 11 10 8 13 13 C 1.54898 * 110.48623 * 90.22751 * 11 10 8 14 14 C 1.54887 * 102.74745 * 156.62423 * 13 11 10 15 15 C 1.54267 * 104.19557 * 322.05636 * 14 13 11 16 16 H 1.09005 * 110.02915 * 264.32765 * 15 14 13 17 17 C 1.52997 * 110.07415 * 142.92223 * 15 14 13 18 18 N 1.46497 * 109.47332 * 67.80388 * 17 15 14 19 19 C 1.36938 * 120.00410 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99846 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00321 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99802 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99889 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46852 * 90.00402 * 23 21 19 25 25 H 1.48505 * 109.46772 * 209.99650 * 23 21 19 26 26 H 1.48494 * 109.47241 * 329.99796 * 23 21 19 27 27 C 1.53873 * 106.60057 * 23.61168 * 15 14 13 28 28 N 1.34398 * 108.45853 * 0.42032 * 7 6 5 29 29 N 1.28760 * 109.52403 * 359.73628 * 28 7 6 30 30 H 1.08999 * 109.46857 * 300.00103 * 1 2 3 31 31 H 1.09001 * 109.46918 * 59.99989 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46880 * 59.99856 * 3 2 1 34 34 H 1.08998 * 109.47064 * 300.00681 * 3 2 1 35 35 H 1.09002 * 109.47153 * 60.00043 * 4 3 2 36 36 H 1.09001 * 109.46832 * 300.00234 * 4 3 2 37 37 H 1.08004 * 126.57851 * 359.97438 * 6 5 4 38 38 H 0.96998 * 120.00271 * 0.02562 * 10 8 7 39 39 H 1.09005 * 110.75242 * 274.93736 * 13 11 10 40 40 H 1.08991 * 110.75327 * 38.30560 * 13 11 10 41 41 H 1.09000 * 110.48445 * 203.37891 * 14 13 11 42 42 H 1.08996 * 110.48741 * 80.73611 * 14 13 11 43 43 H 1.08998 * 109.47458 * 187.81213 * 17 15 14 44 44 H 1.09004 * 109.46942 * 307.80921 * 17 15 14 45 45 H 0.96998 * 120.00274 * 0.02562 * 18 17 15 46 46 H 0.97000 * 119.99605 * 180.02562 * 22 21 19 47 47 H 1.08992 * 110.03325 * 240.71808 * 27 15 14 48 48 H 1.08998 * 110.07099 * 119.30237 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0210 3.0062 0.8916 7 6 5.3064 4.2865 0.5106 8 6 6.2389 5.2022 1.1949 9 8 6.8358 4.8321 2.1875 10 7 6.4293 6.4489 0.7197 11 6 7.3549 7.3585 1.3995 12 1 7.3590 7.1656 2.4723 13 6 8.7822 7.2161 0.8148 14 6 9.4324 8.5776 1.1651 15 6 8.2957 9.6017 0.9673 16 1 8.3596 10.0429 -0.0274 17 6 8.3841 10.6965 2.0324 18 7 9.5867 11.5019 1.8063 19 6 9.8769 12.5482 2.6407 20 1 9.2194 12.7794 3.4658 21 6 11.0161 13.3117 2.4261 22 7 11.2953 14.3171 3.2285 23 14 12.1530 12.9123 0.9988 24 1 11.7213 13.6684 -0.2043 25 1 13.5437 13.2954 1.3515 26 1 12.0977 11.4559 0.7145 27 6 6.9749 8.8266 1.1163 28 7 4.5900 4.5727 -0.5899 29 7 3.8816 3.5495 -0.9204 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 3.8575 0.6435 -0.8891 36 1 3.8567 0.6438 0.8909 37 1 5.4309 2.4809 1.7416 38 1 5.9529 6.7443 -0.0720 39 1 9.3170 6.3974 1.2964 40 1 8.7447 7.0723 -0.2649 41 1 10.2598 8.7906 0.4882 42 1 9.7742 8.5821 2.2001 43 1 7.5025 11.3346 1.9715 44 1 8.4338 10.2389 3.0205 45 1 10.1770 11.2946 1.0652 46 1 12.0912 14.8508 3.0783 47 1 6.3977 8.8916 0.1941 48 1 6.3965 9.2295 1.9477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717870082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:06 Heat of formation + Delta-G solvation = 22.583879 kcal Electronic energy + Delta-G solvation = -27850.461912 eV Core-core repulsion = 23749.968761 eV Total energy + Delta-G solvation = -4100.493151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.68880 -39.88659 -38.77593 -38.06157 -35.51109 -34.95197 -33.43768 -31.67344 -31.27386 -30.44153 -29.01067 -27.90875 -27.10522 -24.72559 -24.67646 -23.65369 -22.32705 -21.81558 -20.87442 -20.47845 -19.64776 -18.56047 -17.46677 -17.36596 -17.13037 -16.57633 -16.44670 -16.16906 -15.65091 -15.09679 -14.92566 -14.82933 -14.70311 -14.37077 -14.15913 -13.83734 -13.39355 -13.15077 -13.03719 -12.80657 -12.65649 -12.40366 -12.36705 -12.13410 -11.86563 -11.69363 -11.64071 -11.21092 -10.92877 -10.90999 -10.73217 -10.65266 -10.50932 -10.33233 -10.32607 -10.22079 -9.96608 -9.77114 -9.53965 -9.10485 -8.83746 -7.16803 -5.72124 -3.06826 0.63423 1.32431 1.34389 2.92432 2.95470 3.03730 3.41077 3.43897 3.48748 3.74979 3.81687 4.02968 4.28247 4.36865 4.47240 4.56095 4.62720 4.63699 4.66323 4.70238 4.74103 4.83030 4.97738 5.00750 5.02220 5.31756 5.40658 5.52989 5.54572 5.57955 5.62529 5.77196 5.80274 5.87384 5.98329 6.05571 6.14597 6.22299 6.25082 6.40162 6.48655 6.56687 6.76040 6.88045 7.24385 7.52996 7.98721 8.05194 8.47330 9.27206 9.99685 10.20082 11.46562 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.041122 B = 0.001550 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.731307 B =18057.377341 C =18175.089079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.362 5.362 6 C 0.099 3.901 7 C -0.099 4.099 8 C 0.604 3.396 9 O -0.537 6.537 10 N -0.705 5.705 11 C 0.139 3.861 12 H 0.099 0.901 13 C -0.133 4.133 14 C -0.114 4.114 15 C -0.100 4.100 16 H 0.074 0.926 17 C 0.163 3.837 18 N -0.756 5.756 19 C -0.242 4.242 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.936 5.936 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.276 1.276 27 C -0.121 4.121 28 N -0.201 5.201 29 N -0.063 5.063 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.208 0.792 38 H 0.407 0.593 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.026 0.974 44 H 0.028 0.972 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.069 0.931 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.856 -32.238 -8.446 39.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.003 3.997 5 N -0.148 5.148 6 C -0.057 4.057 7 C -0.238 4.238 8 C 0.387 3.613 9 O -0.413 6.413 10 N -0.355 5.355 11 C 0.035 3.965 12 H 0.117 0.883 13 C -0.172 4.172 14 C -0.152 4.152 15 C -0.119 4.119 16 H 0.092 0.908 17 C 0.036 3.964 18 N -0.401 5.401 19 C -0.372 4.372 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.584 5.584 23 Si 0.715 3.285 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.160 4.160 28 N -0.075 5.075 29 N -0.044 5.044 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.224 0.776 38 H 0.243 0.757 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.143 -32.134 -8.783 39.456 hybrid contribution 0.900 -0.230 -0.535 1.072 sum -20.243 -32.365 -9.319 39.295 Atomic orbital electron populations 1.22823 0.79481 1.03400 1.00605 1.87780 1.20935 1.26340 1.95639 1.22620 0.91799 0.85925 1.02492 1.21719 0.93298 0.77868 1.06766 1.50299 1.30753 1.13543 1.20217 1.23438 0.91896 0.94853 0.95505 1.21550 1.07363 0.95759 0.99159 1.16735 0.80148 0.81342 0.83027 1.90830 1.48982 1.75962 1.25544 1.45918 1.45340 1.12660 1.31577 1.22025 0.88211 0.88308 0.97944 0.88271 1.22896 0.95161 0.98409 1.00734 1.22363 0.97495 0.92723 1.02658 1.21938 0.93405 0.95988 1.00598 0.90783 1.20779 0.89970 0.90531 0.95113 1.42709 1.26002 1.36245 1.35165 1.19084 1.06583 1.03957 1.07580 0.89276 1.24664 0.98206 0.97756 0.98616 1.69707 1.28139 1.21193 1.39386 0.86545 0.80988 0.77828 0.83190 1.21161 1.21787 1.20263 1.22394 0.98167 0.92981 1.02412 1.74649 1.03726 1.18979 1.10138 1.82008 1.20142 0.90416 1.11797 0.93604 0.93487 0.88921 0.92248 0.91198 0.87201 0.86577 0.77566 0.75738 0.91273 0.91428 0.91588 0.90565 0.95631 0.95389 0.80682 0.93137 0.91253 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 11.01 101.05 1.11 1.21 16 2 O -0.39 -1.94 10.70 -35.23 -0.38 -2.32 16 3 C 0.05 0.21 6.14 37.16 0.23 0.43 16 4 C 0.12 0.42 6.91 -4.04 -0.03 0.39 16 5 N -0.36 -2.37 3.69 -61.06 -0.23 -2.60 16 6 C 0.10 0.70 11.27 -16.83 -0.19 0.51 16 7 C -0.10 -0.99 6.99 -83.55 -0.58 -1.57 16 8 C 0.60 7.11 7.82 -12.48 -0.10 7.01 16 9 O -0.54 -7.71 16.51 5.28 0.09 -7.62 16 10 N -0.71 -7.62 5.16 -53.24 -0.27 -7.89 16 11 C 0.14 1.66 3.22 -66.27 -0.21 1.45 16 12 H 0.10 1.32 7.55 -51.93 -0.39 0.93 16 13 C -0.13 -1.65 6.58 -24.74 -0.16 -1.81 16 14 C -0.11 -1.66 6.09 -25.07 -0.15 -1.81 16 15 C -0.10 -1.49 2.96 -89.50 -0.26 -1.75 16 16 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 17 C 0.16 3.14 5.32 -4.04 -0.02 3.11 16 18 N -0.76 -18.13 5.25 -59.91 -0.31 -18.45 16 19 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 20 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 21 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 22 N -0.94 -29.84 13.97 55.49 0.78 -29.06 16 23 Si 0.88 22.41 27.74 -169.99 -4.71 17.69 16 24 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 27 C -0.12 -1.44 6.19 -25.61 -0.16 -1.60 16 28 N -0.20 -2.13 12.04 32.85 0.40 -1.74 16 29 N -0.06 -0.61 13.65 60.35 0.82 0.22 16 30 H 0.05 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.05 0.12 8.14 -51.93 -0.42 -0.31 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.12 0.13 8.08 -51.93 -0.42 -0.29 16 37 H 0.21 0.84 8.06 -52.48 -0.42 0.41 16 38 H 0.41 3.83 8.05 -40.82 -0.33 3.50 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 1.21 7.76 -51.93 -0.40 0.81 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.03 0.55 8.01 -51.93 -0.42 0.14 16 45 H 0.36 8.43 5.41 -40.82 -0.22 8.21 16 46 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 47 H 0.07 0.71 7.73 -51.93 -0.40 0.31 16 48 H 0.08 0.92 7.67 -51.93 -0.40 0.52 16 LS Contribution 400.15 15.07 6.03 6.03 Total: -1.00 -35.87 400.15 -6.23 -42.10 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.64 Total: 5.19 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.79 Total: -1.56 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 1.18 Total: -59.51 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.29 Total: -9.94 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.87 -6.23 -42.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717870082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.684 kcal (2) G-P(sol) polarization free energy of solvation -35.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds