Wall clock time and date at job start Tue Mar 31 2020 21:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.52997 * 109.47503 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47212 * 180.02562 * 4 3 2 6 6 C 1.34814 * 126.59180 * 124.71228 * 5 4 3 7 7 C 1.36596 * 106.83649 * 179.85319 * 6 5 4 8 8 C 1.47525 * 125.76816 * 180.17992 * 7 6 5 9 9 O 1.21593 * 120.00268 * 0.30526 * 8 7 6 10 10 N 1.34774 * 119.99611 * 180.30155 * 8 7 6 11 11 C 1.46499 * 119.99901 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.43788 * 327.54524 * 11 10 8 13 13 C 1.54898 * 110.48623 * 90.22751 * 11 10 8 14 14 C 1.54887 * 102.74745 * 156.62423 * 13 11 10 15 15 C 1.54267 * 104.19557 * 322.05636 * 14 13 11 16 16 H 1.09005 * 110.02915 * 264.32765 * 15 14 13 17 17 C 1.52997 * 110.07415 * 142.92223 * 15 14 13 18 18 N 1.46497 * 109.47332 * 67.80388 * 17 15 14 19 19 C 1.36938 * 120.00410 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99846 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00321 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99802 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99889 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46852 * 90.00402 * 23 21 19 25 25 H 1.48505 * 109.46772 * 209.99650 * 23 21 19 26 26 H 1.48494 * 109.47241 * 329.99796 * 23 21 19 27 27 C 1.53873 * 106.60057 * 23.61168 * 15 14 13 28 28 N 1.34398 * 108.45853 * 0.42032 * 7 6 5 29 29 N 1.28760 * 109.52403 * 359.73628 * 28 7 6 30 30 H 1.08999 * 109.46857 * 300.00103 * 1 2 3 31 31 H 1.09001 * 109.46918 * 59.99989 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46880 * 59.99856 * 3 2 1 34 34 H 1.08998 * 109.47064 * 300.00681 * 3 2 1 35 35 H 1.09002 * 109.47153 * 60.00043 * 4 3 2 36 36 H 1.09001 * 109.46832 * 300.00234 * 4 3 2 37 37 H 1.08004 * 126.57851 * 359.97438 * 6 5 4 38 38 H 0.96998 * 120.00271 * 0.02562 * 10 8 7 39 39 H 1.09005 * 110.75242 * 274.93736 * 13 11 10 40 40 H 1.08991 * 110.75327 * 38.30560 * 13 11 10 41 41 H 1.09000 * 110.48445 * 203.37891 * 14 13 11 42 42 H 1.08996 * 110.48741 * 80.73611 * 14 13 11 43 43 H 1.08998 * 109.47458 * 187.81213 * 17 15 14 44 44 H 1.09004 * 109.46942 * 307.80921 * 17 15 14 45 45 H 0.96998 * 120.00274 * 0.02562 * 18 17 15 46 46 H 0.97000 * 119.99605 * 180.02562 * 22 21 19 47 47 H 1.08992 * 110.03325 * 240.71808 * 27 15 14 48 48 H 1.08998 * 110.07099 * 119.30237 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0210 3.0062 0.8916 7 6 5.3064 4.2865 0.5106 8 6 6.2389 5.2022 1.1949 9 8 6.8358 4.8321 2.1875 10 7 6.4293 6.4489 0.7197 11 6 7.3549 7.3585 1.3995 12 1 7.3590 7.1656 2.4723 13 6 8.7822 7.2161 0.8148 14 6 9.4324 8.5776 1.1651 15 6 8.2957 9.6017 0.9673 16 1 8.3596 10.0429 -0.0274 17 6 8.3841 10.6965 2.0324 18 7 9.5867 11.5019 1.8063 19 6 9.8769 12.5482 2.6407 20 1 9.2194 12.7794 3.4658 21 6 11.0161 13.3117 2.4261 22 7 11.2953 14.3171 3.2285 23 14 12.1530 12.9123 0.9988 24 1 11.7213 13.6684 -0.2043 25 1 13.5437 13.2954 1.3515 26 1 12.0977 11.4559 0.7145 27 6 6.9749 8.8266 1.1163 28 7 4.5900 4.5727 -0.5899 29 7 3.8816 3.5495 -0.9204 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 3.8575 0.6435 -0.8891 36 1 3.8567 0.6438 0.8909 37 1 5.4309 2.4809 1.7416 38 1 5.9529 6.7443 -0.0720 39 1 9.3170 6.3974 1.2964 40 1 8.7447 7.0723 -0.2649 41 1 10.2598 8.7906 0.4882 42 1 9.7742 8.5821 2.2001 43 1 7.5025 11.3346 1.9715 44 1 8.4338 10.2389 3.0205 45 1 10.1770 11.2946 1.0652 46 1 12.0912 14.8508 3.0783 47 1 6.3977 8.8916 0.1941 48 1 6.3965 9.2295 1.9477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717870082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:05 Heat of formation + Delta-G solvation = -4.824865 kcal Electronic energy + Delta-G solvation = -27851.650444 eV Core-core repulsion = 23749.968761 eV Total energy + Delta-G solvation = -4101.681683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.31221 -40.83396 -39.23260 -39.04601 -36.57720 -36.00076 -34.78247 -33.26241 -32.23478 -31.03322 -30.31321 -29.00836 -27.42006 -26.25088 -25.12791 -24.53238 -23.66925 -22.84645 -21.75074 -21.38997 -20.95133 -19.53639 -19.16391 -17.85300 -17.54670 -17.52427 -16.90308 -16.72574 -16.60427 -16.21780 -16.10449 -15.77953 -15.59011 -15.46650 -15.07981 -14.89960 -14.63984 -14.56324 -14.23240 -13.87884 -13.50328 -13.48272 -13.24900 -12.90508 -12.83819 -12.81425 -12.45006 -12.40246 -12.17391 -12.13909 -11.98416 -11.80599 -11.72633 -11.61845 -11.44698 -11.35846 -11.21842 -10.93271 -10.80785 -10.46575 -10.01096 -9.26523 -8.01372 -5.34288 0.07057 0.57130 0.88592 1.38905 1.42692 1.50195 2.09190 2.20764 2.50157 2.64974 3.13756 3.30129 3.42915 3.54242 3.59160 3.74553 3.78686 3.88113 3.92513 3.94654 4.07998 4.17717 4.38538 4.42462 4.46991 4.49636 4.52414 4.55491 4.58557 4.63246 4.66558 4.74617 4.77566 4.83886 4.93433 5.07297 5.08611 5.15054 5.25836 5.31670 5.38843 5.53524 5.56078 5.77597 5.97582 6.22977 6.42262 6.84654 7.10313 7.13491 7.87125 8.07022 9.20460 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.041122 B = 0.001550 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.731307 B =18057.377341 C =18175.089079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.350 5.350 6 C 0.117 3.883 7 C -0.123 4.123 8 C 0.605 3.395 9 O -0.568 6.568 10 N -0.698 5.698 11 C 0.145 3.855 12 H 0.084 0.916 13 C -0.122 4.122 14 C -0.115 4.115 15 C -0.091 4.091 16 H 0.082 0.918 17 C 0.159 3.841 18 N -0.757 5.757 19 C -0.236 4.236 20 H 0.054 0.946 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.956 3.044 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.249 1.249 27 C -0.112 4.112 28 N -0.218 5.218 29 N -0.085 5.085 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.120 0.880 36 H 0.146 0.854 37 H 0.239 0.761 38 H 0.415 0.585 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.024 0.976 44 H 0.021 0.979 45 H 0.367 0.633 46 H 0.258 0.742 47 H 0.093 0.907 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.439 -34.945 -10.256 42.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.001 3.999 5 N -0.135 5.135 6 C -0.040 4.040 7 C -0.262 4.262 8 C 0.390 3.610 9 O -0.446 6.446 10 N -0.348 5.348 11 C 0.040 3.960 12 H 0.102 0.898 13 C -0.161 4.161 14 C -0.153 4.153 15 C -0.110 4.110 16 H 0.100 0.900 17 C 0.033 3.967 18 N -0.403 5.403 19 C -0.367 4.367 20 H 0.072 0.928 21 C -0.256 4.256 22 N -0.636 5.636 23 Si 0.783 3.217 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.174 1.174 27 C -0.150 4.150 28 N -0.091 5.091 29 N -0.065 5.065 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.164 0.836 37 H 0.255 0.745 38 H 0.253 0.747 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.039 0.961 45 H 0.200 0.800 46 H 0.066 0.934 47 H 0.112 0.888 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.794 -34.891 -10.640 42.492 hybrid contribution 0.943 0.543 0.122 1.095 sum -20.850 -34.348 -10.518 41.535 Atomic orbital electron populations 1.22978 0.78617 1.04337 1.00996 1.87753 1.21975 1.26629 1.95692 1.22567 0.92315 0.85677 1.02015 1.22038 0.92704 0.76402 1.08781 1.50462 1.30065 1.13883 1.19129 1.23896 0.90707 0.93902 0.95497 1.21447 1.08191 0.96722 0.99852 1.16935 0.79929 0.81530 0.82594 1.90811 1.50334 1.76580 1.26902 1.45812 1.44983 1.12354 1.31637 1.21827 0.88387 0.88550 0.97218 0.89832 1.22797 0.94914 0.96859 1.01513 1.22319 0.97510 0.93929 1.01529 1.21841 0.95245 0.94816 0.99115 0.89969 1.20967 0.87956 0.91237 0.96523 1.42705 1.27541 1.35532 1.34473 1.19073 1.05748 1.04915 1.06980 0.92810 1.25525 1.00277 0.97823 1.01981 1.69897 1.28989 1.22851 1.41908 0.85391 0.77871 0.79154 0.79306 1.20300 1.22286 1.17372 1.22304 0.96739 0.92259 1.03706 1.74617 1.04165 1.19768 1.10595 1.81945 1.20596 0.91062 1.12941 0.93099 0.93245 0.87790 0.92255 0.92231 0.86210 0.83592 0.74526 0.74749 0.91724 0.90008 0.91614 0.92453 0.95766 0.96126 0.80011 0.93374 0.88813 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 113.37 1.25 1.37 16 2 O -0.40 -3.36 10.70 -148.98 -1.59 -4.96 16 3 C 0.05 0.35 6.14 71.98 0.44 0.79 16 4 C 0.12 0.51 6.91 86.38 0.60 1.11 16 5 N -0.35 -3.81 3.69 -347.08 -1.28 -5.10 16 6 C 0.12 1.38 11.27 83.85 0.95 2.32 16 7 C -0.12 -2.26 6.99 40.82 0.29 -1.97 16 8 C 0.61 13.47 7.82 86.69 0.68 14.14 16 9 O -0.57 -15.73 16.51 -4.01 -0.07 -15.80 16 10 N -0.70 -13.92 5.16 -440.60 -2.27 -16.20 16 11 C 0.14 3.23 3.22 46.07 0.15 3.38 16 12 H 0.08 2.17 7.55 -2.39 -0.02 2.16 16 13 C -0.12 -2.80 6.58 31.89 0.21 -2.59 16 14 C -0.11 -3.15 6.09 31.67 0.19 -2.96 16 15 C -0.09 -2.53 2.96 -10.07 -0.03 -2.56 16 16 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 17 C 0.16 6.03 5.32 86.38 0.46 6.49 16 18 N -0.76 -35.85 5.25 -343.46 -1.80 -37.65 16 19 C -0.24 -13.82 10.47 84.03 0.88 -12.94 16 20 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 21 C -0.06 -3.89 5.50 84.86 0.47 -3.43 16 22 N -0.99 -64.37 13.97 21.65 0.30 -64.07 16 23 Si 0.96 46.02 27.74 68.60 1.90 47.92 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 27 C -0.11 -2.42 6.19 31.32 0.19 -2.23 16 28 N -0.22 -4.36 12.04 -49.99 -0.60 -4.96 16 29 N -0.09 -1.52 13.65 37.02 0.51 -1.01 16 30 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.06 0.39 8.14 -2.39 -0.02 0.38 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.15 -0.21 8.08 -2.39 -0.02 -0.23 16 37 H 0.24 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.42 6.98 8.05 -92.71 -0.75 6.24 16 39 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.06 1.79 7.76 -2.39 -0.02 1.77 16 43 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.02 0.82 8.01 -2.38 -0.02 0.80 16 45 H 0.37 16.42 5.41 -92.71 -0.50 15.91 16 46 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 47 H 0.09 1.63 7.73 -2.39 -0.02 1.61 16 48 H 0.08 1.71 7.67 -2.39 -0.02 1.69 16 Total: -1.00 -78.94 400.15 1.48 -77.46 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.33 Total: 23.43 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 6.72 Total: 0.93 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -5.15 Total: -128.98 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -1.66 Total: -20.76 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.92 kcal Total: -78.94 1.48 -77.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717870082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.637 kcal (2) G-P(sol) polarization free energy of solvation -78.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds