Wall clock time and date at job start Tue Mar 31 2020 21:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46892 * 180.02562 * 4 3 2 6 6 C 1.34813 * 126.59139 * 125.00440 * 5 4 3 7 7 C 1.36597 * 106.83840 * 179.97438 * 6 5 4 8 8 C 1.47527 * 125.77013 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00184 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99727 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99960 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.01935 * 34.29599 * 11 10 8 13 13 C 1.54271 * 110.02857 * 272.90797 * 11 10 8 14 14 C 1.54967 * 104.15863 * 217.13401 * 13 11 10 15 15 C 1.54891 * 102.77732 * 37.88534 * 14 13 11 16 16 H 1.09003 * 110.47857 * 80.76224 * 15 14 13 17 17 C 1.52995 * 110.48702 * 203.40388 * 15 14 13 18 18 N 1.46494 * 109.47358 * 289.77601 * 17 15 14 19 19 C 1.36937 * 120.00097 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00104 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99892 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00117 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99864 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47199 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47181 * 120.00425 * 23 21 19 26 26 H 1.48504 * 109.47280 * 240.00229 * 23 21 19 27 27 C 1.53872 * 110.03740 * 155.69044 * 11 10 8 28 28 N 1.34404 * 108.46221 * 359.97438 * 7 6 5 29 29 N 1.28761 * 109.51702 * 359.71295 * 28 7 6 30 30 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 34 34 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 35 35 H 1.08997 * 109.46502 * 300.00085 * 4 3 2 36 36 H 1.08998 * 109.46733 * 60.00191 * 4 3 2 37 37 H 1.08000 * 126.58504 * 0.02562 * 6 5 4 38 38 H 0.96998 * 120.00498 * 359.97438 * 10 8 7 39 39 H 1.08991 * 110.48669 * 335.77930 * 13 11 10 40 40 H 1.09004 * 110.48614 * 98.42719 * 13 11 10 41 41 H 1.09004 * 110.71924 * 279.57387 * 14 13 11 42 42 H 1.08998 * 110.92403 * 156.30014 * 14 13 11 43 43 H 1.08999 * 109.47379 * 49.78133 * 17 15 14 44 44 H 1.09001 * 109.46752 * 169.77870 * 17 15 14 45 45 H 0.97004 * 120.00023 * 0.02562 * 18 17 15 46 46 H 0.97000 * 119.99628 * 179.97438 * 22 21 19 47 47 H 1.09000 * 110.03267 * 238.57374 * 27 11 10 48 48 H 1.09007 * 110.02672 * 359.94872 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0256 3.0043 0.8866 7 6 5.3067 4.2865 0.5088 8 6 6.2389 5.2024 1.1932 9 8 6.8350 4.8328 2.1865 10 7 6.4298 6.4489 0.7176 11 6 7.3560 7.3584 1.3969 12 1 8.1940 6.7972 1.8102 13 6 6.6218 8.1169 2.5219 14 6 7.2383 9.5382 2.4857 15 6 7.4287 9.7906 0.9694 16 1 6.4892 10.1042 0.5142 17 6 8.5163 10.8405 0.7337 18 7 8.0290 12.1534 1.1637 19 6 8.8351 13.2543 1.0483 20 1 9.8300 13.1548 0.6399 21 6 8.3732 14.4985 1.4552 22 7 7.1606 14.6200 1.9524 23 14 9.4725 16.0005 1.2971 24 1 10.7773 15.5995 0.7123 25 1 8.8208 17.0002 0.4134 26 1 9.6933 16.5959 2.6395 27 6 7.8692 8.4219 0.4104 28 7 4.5905 4.5727 -0.5919 29 7 3.8866 3.5475 -0.9257 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6885 1.8464 0.8900 35 1 3.8574 0.6437 0.8891 36 1 3.8567 0.6441 -0.8909 37 1 5.4409 2.4769 1.7326 38 1 5.9546 6.7437 -0.0750 39 1 5.5520 8.1600 2.3177 40 1 6.8084 7.6436 3.4859 41 1 8.1973 9.5558 3.0036 42 1 6.5550 10.2700 2.9165 43 1 9.4055 10.5775 1.3066 44 1 8.7644 10.8746 -0.3271 45 1 7.1356 12.2428 1.5308 46 1 6.8380 15.4893 2.2371 47 1 8.9563 8.3774 0.3456 48 1 7.4298 8.2609 -0.5741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717870083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:10 Heat of formation + Delta-G solvation = 18.972300 kcal Electronic energy + Delta-G solvation = -27815.841399 eV Core-core repulsion = 23715.191638 eV Total energy + Delta-G solvation = -4100.649761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.63851 -39.84376 -38.73767 -37.90835 -35.46523 -34.79014 -33.33721 -31.62328 -31.09351 -30.33880 -28.72976 -27.73099 -27.05403 -24.65455 -24.57867 -23.62010 -22.28248 -22.11967 -20.78522 -20.24680 -19.60211 -18.52887 -17.32024 -17.09397 -16.98417 -16.47669 -16.39899 -16.08128 -15.60092 -15.06736 -15.03575 -14.74367 -14.46158 -14.34872 -14.12035 -13.71854 -13.35963 -13.02829 -12.97470 -12.76045 -12.74479 -12.35085 -12.14618 -12.09522 -11.78109 -11.64034 -11.25980 -11.03997 -10.88240 -10.82830 -10.66871 -10.50965 -10.47372 -10.27138 -10.21543 -10.14358 -9.88356 -9.72375 -9.62414 -9.05199 -8.81564 -6.85026 -5.71487 -2.99223 0.68068 1.37293 1.39393 2.98394 3.00511 3.09120 3.46738 3.52351 3.54608 3.79302 3.86355 4.06833 4.33254 4.40507 4.51970 4.60722 4.62506 4.66225 4.74000 4.77670 4.85076 4.86762 5.02158 5.03970 5.11991 5.37493 5.59054 5.59944 5.67982 5.70710 5.72364 5.81753 5.94550 5.97334 6.15401 6.21852 6.28500 6.31886 6.36942 6.56533 6.61920 6.66299 6.87545 7.00887 7.30772 7.58770 7.75570 8.04367 8.47928 9.59061 10.18650 10.53257 11.51657 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.001542 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.148327 B =18159.735008 C =18509.077489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.362 5.362 6 C 0.099 3.901 7 C -0.099 4.099 8 C 0.603 3.397 9 O -0.540 6.540 10 N -0.705 5.705 11 C 0.141 3.859 12 H 0.092 0.908 13 C -0.133 4.133 14 C -0.111 4.111 15 C -0.097 4.097 16 H 0.076 0.924 17 C 0.160 3.840 18 N -0.732 5.732 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.123 4.123 28 N -0.200 5.200 29 N -0.063 5.063 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.207 0.793 38 H 0.408 0.592 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.020 0.980 44 H 0.017 0.983 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.077 0.923 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.144 -33.236 -3.106 35.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.149 5.149 6 C -0.058 4.058 7 C -0.238 4.238 8 C 0.387 3.613 9 O -0.416 6.416 10 N -0.355 5.355 11 C 0.037 3.963 12 H 0.110 0.890 13 C -0.172 4.172 14 C -0.149 4.149 15 C -0.116 4.116 16 H 0.094 0.906 17 C 0.032 3.968 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.162 4.162 28 N -0.074 5.074 29 N -0.043 5.043 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.224 0.776 38 H 0.244 0.756 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.038 0.962 44 H 0.035 0.965 45 H 0.217 0.783 46 H 0.063 0.937 47 H 0.096 0.904 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.243 -33.200 -3.693 35.246 hybrid contribution 0.207 0.833 0.517 1.002 sum -11.036 -32.366 -3.176 34.343 Atomic orbital electron populations 1.22823 0.79489 1.03376 1.00626 1.87778 1.20931 1.26359 1.95645 1.22626 0.91803 0.85901 1.02524 1.21708 0.93302 0.77901 1.06710 1.50299 1.30655 1.13668 1.20243 1.23420 0.91807 0.94907 0.95642 1.21567 1.07297 0.95639 0.99312 1.16741 0.80259 0.81245 0.83050 1.90813 1.48953 1.76399 1.25463 1.46071 1.45378 1.12532 1.31526 1.21796 0.91744 0.89789 0.92941 0.88990 1.22811 0.99954 0.96297 0.98150 1.22481 1.01264 0.94820 0.96299 1.22150 0.99970 0.93781 0.95683 0.90606 1.20697 0.93912 0.85518 0.96644 1.42359 1.17201 1.02096 1.75933 1.19296 0.96551 0.86590 1.34352 0.91200 1.24726 0.96774 0.97616 1.01998 1.69670 1.16690 1.23296 1.48646 0.86132 0.79628 0.83379 0.77169 1.20582 1.21949 1.21929 1.22438 1.01725 0.93969 0.98019 1.74668 1.03780 1.18832 1.10097 1.82019 1.20350 0.90484 1.11473 0.93466 0.93612 0.88939 0.91183 0.92229 0.86618 0.87235 0.77612 0.75637 0.91426 0.91391 0.91176 0.90891 0.96242 0.96523 0.78275 0.93652 0.90403 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.22 16 2 O -0.39 -2.08 10.70 -35.23 -0.38 -2.46 16 3 C 0.05 0.23 6.15 37.16 0.23 0.45 16 4 C 0.13 0.47 6.91 -4.04 -0.03 0.44 16 5 N -0.36 -2.53 3.69 -61.06 -0.23 -2.76 16 6 C 0.10 0.74 11.27 -16.84 -0.19 0.55 16 7 C -0.10 -1.04 6.99 -83.55 -0.58 -1.63 16 8 C 0.60 7.39 7.81 -12.47 -0.10 7.29 16 9 O -0.54 -7.86 16.53 5.29 0.09 -7.77 16 10 N -0.70 -8.14 5.04 -53.76 -0.27 -8.41 16 11 C 0.14 1.75 3.23 -66.81 -0.22 1.54 16 12 H 0.09 1.20 7.59 -51.93 -0.39 0.81 16 13 C -0.13 -1.77 6.54 -25.03 -0.16 -1.94 16 14 C -0.11 -1.71 6.19 -24.70 -0.15 -1.87 16 15 C -0.10 -1.54 2.89 -88.96 -0.26 -1.80 16 16 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 17 C 0.16 3.22 5.54 -4.05 -0.02 3.20 16 18 N -0.73 -18.71 5.49 -59.91 -0.33 -19.04 16 19 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 20 H 0.07 1.94 7.83 -52.48 -0.41 1.52 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 23 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 C -0.12 -1.56 6.14 -25.62 -0.16 -1.72 16 28 N -0.20 -2.26 12.04 32.85 0.40 -1.86 16 29 N -0.06 -0.64 13.65 60.35 0.82 0.18 16 30 H 0.05 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.05 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.12 0.16 8.08 -51.93 -0.42 -0.26 16 36 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.21 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.41 4.29 7.99 -40.82 -0.33 3.97 16 39 H 0.07 0.89 8.05 -51.93 -0.42 0.48 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.02 0.40 8.02 -51.93 -0.42 -0.02 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.38 10.28 7.64 -40.82 -0.31 9.97 16 46 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.08 0.96 7.84 -51.93 -0.41 0.56 16 48 H 0.07 0.81 7.61 -51.93 -0.40 0.41 16 LS Contribution 403.63 15.07 6.08 6.08 Total: -1.00 -34.91 403.63 -6.58 -41.49 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.70 Total: 6.39 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -0.77 Total: -1.68 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 1.12 Total: -59.75 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.29 Total: -10.23 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.91 -6.58 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717870083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.466 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds