Wall clock time and date at job start Tue Mar 31 2020 21:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46892 * 180.02562 * 4 3 2 6 6 C 1.34813 * 126.59139 * 125.00440 * 5 4 3 7 7 C 1.36597 * 106.83840 * 179.97438 * 6 5 4 8 8 C 1.47527 * 125.77013 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00184 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99727 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99960 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.01935 * 34.29599 * 11 10 8 13 13 C 1.54271 * 110.02857 * 272.90797 * 11 10 8 14 14 C 1.54967 * 104.15863 * 217.13401 * 13 11 10 15 15 C 1.54891 * 102.77732 * 37.88534 * 14 13 11 16 16 H 1.09003 * 110.47857 * 80.76224 * 15 14 13 17 17 C 1.52995 * 110.48702 * 203.40388 * 15 14 13 18 18 N 1.46494 * 109.47358 * 289.77601 * 17 15 14 19 19 C 1.36937 * 120.00097 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00104 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99892 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00117 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99864 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47199 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47181 * 120.00425 * 23 21 19 26 26 H 1.48504 * 109.47280 * 240.00229 * 23 21 19 27 27 C 1.53872 * 110.03740 * 155.69044 * 11 10 8 28 28 N 1.34404 * 108.46221 * 359.97438 * 7 6 5 29 29 N 1.28761 * 109.51702 * 359.71295 * 28 7 6 30 30 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 34 34 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 35 35 H 1.08997 * 109.46502 * 300.00085 * 4 3 2 36 36 H 1.08998 * 109.46733 * 60.00191 * 4 3 2 37 37 H 1.08000 * 126.58504 * 0.02562 * 6 5 4 38 38 H 0.96998 * 120.00498 * 359.97438 * 10 8 7 39 39 H 1.08991 * 110.48669 * 335.77930 * 13 11 10 40 40 H 1.09004 * 110.48614 * 98.42719 * 13 11 10 41 41 H 1.09004 * 110.71924 * 279.57387 * 14 13 11 42 42 H 1.08998 * 110.92403 * 156.30014 * 14 13 11 43 43 H 1.08999 * 109.47379 * 49.78133 * 17 15 14 44 44 H 1.09001 * 109.46752 * 169.77870 * 17 15 14 45 45 H 0.97004 * 120.00023 * 0.02562 * 18 17 15 46 46 H 0.97000 * 119.99628 * 179.97438 * 22 21 19 47 47 H 1.09000 * 110.03267 * 238.57374 * 27 11 10 48 48 H 1.09007 * 110.02672 * 359.94872 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0256 3.0043 0.8866 7 6 5.3067 4.2865 0.5088 8 6 6.2389 5.2024 1.1932 9 8 6.8350 4.8328 2.1865 10 7 6.4298 6.4489 0.7176 11 6 7.3560 7.3584 1.3969 12 1 8.1940 6.7972 1.8102 13 6 6.6218 8.1169 2.5219 14 6 7.2383 9.5382 2.4857 15 6 7.4287 9.7906 0.9694 16 1 6.4892 10.1042 0.5142 17 6 8.5163 10.8405 0.7337 18 7 8.0290 12.1534 1.1637 19 6 8.8351 13.2543 1.0483 20 1 9.8300 13.1548 0.6399 21 6 8.3732 14.4985 1.4552 22 7 7.1606 14.6200 1.9524 23 14 9.4725 16.0005 1.2971 24 1 10.7773 15.5995 0.7123 25 1 8.8208 17.0002 0.4134 26 1 9.6933 16.5959 2.6395 27 6 7.8692 8.4219 0.4104 28 7 4.5905 4.5727 -0.5919 29 7 3.8866 3.5475 -0.9257 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6885 1.8464 0.8900 35 1 3.8574 0.6437 0.8891 36 1 3.8567 0.6441 -0.8909 37 1 5.4409 2.4769 1.7326 38 1 5.9546 6.7437 -0.0750 39 1 5.5520 8.1600 2.3177 40 1 6.8084 7.6436 3.4859 41 1 8.1973 9.5558 3.0036 42 1 6.5550 10.2700 2.9165 43 1 9.4055 10.5775 1.3066 44 1 8.7644 10.8746 -0.3271 45 1 7.1356 12.2428 1.5308 46 1 6.8380 15.4893 2.2371 47 1 8.9563 8.3774 0.3456 48 1 7.4298 8.2609 -0.5741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717870083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:09 Heat of formation + Delta-G solvation = -6.933448 kcal Electronic energy + Delta-G solvation = -27816.964757 eV Core-core repulsion = 23715.191638 eV Total energy + Delta-G solvation = -4101.773118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.30505 -40.84178 -39.16298 -39.01558 -36.45603 -35.99364 -34.72481 -32.95510 -32.20323 -30.98485 -30.11291 -28.92549 -27.41441 -26.26292 -25.12517 -24.57240 -23.87133 -22.84079 -21.65128 -21.28607 -20.94000 -19.23269 -19.02939 -17.83617 -17.53706 -17.46060 -16.91911 -16.71845 -16.65451 -16.15999 -15.96909 -15.80658 -15.54626 -15.34865 -15.12267 -15.02880 -14.58834 -14.50206 -14.29185 -13.55435 -13.48827 -13.25392 -13.13131 -12.88691 -12.81488 -12.80401 -12.45287 -12.37747 -12.16352 -12.10320 -12.05959 -11.76732 -11.60259 -11.51491 -11.45552 -11.44251 -11.19683 -10.89636 -10.80877 -10.45883 -10.01740 -8.95544 -7.93007 -5.20944 0.07959 0.57879 0.89588 1.48407 1.49100 1.59339 2.11641 2.21997 2.57942 2.65243 3.15068 3.40705 3.43827 3.60119 3.63134 3.74982 3.79712 3.91292 3.94175 4.08353 4.18013 4.20286 4.42176 4.42632 4.47559 4.53317 4.54421 4.56697 4.58721 4.65239 4.71634 4.77391 4.80737 4.83735 4.90552 5.08681 5.11641 5.18628 5.27294 5.32808 5.41157 5.50200 5.56557 5.60423 5.97317 6.29902 6.42815 6.85190 7.13509 7.36096 8.14008 8.36899 9.30944 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.001542 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.148327 B =18159.735008 C =18509.077489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.350 5.350 6 C 0.119 3.881 7 C -0.124 4.124 8 C 0.606 3.394 9 O -0.566 6.566 10 N -0.701 5.701 11 C 0.150 3.850 12 H 0.091 0.909 13 C -0.123 4.123 14 C -0.108 4.108 15 C -0.089 4.089 16 H 0.068 0.932 17 C 0.158 3.842 18 N -0.744 5.744 19 C -0.244 4.244 20 H 0.075 0.925 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.972 3.028 24 H -0.266 1.266 25 H -0.294 1.294 26 H -0.293 1.293 27 C -0.111 4.111 28 N -0.220 5.220 29 N -0.086 5.086 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.147 0.853 36 H 0.120 0.880 37 H 0.240 0.760 38 H 0.413 0.587 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.020 0.980 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.086 0.914 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.661 -35.323 -3.386 37.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.001 3.999 5 N -0.136 5.136 6 C -0.039 4.039 7 C -0.263 4.263 8 C 0.391 3.609 9 O -0.444 6.444 10 N -0.351 5.351 11 C 0.045 3.955 12 H 0.109 0.891 13 C -0.162 4.162 14 C -0.146 4.146 15 C -0.108 4.108 16 H 0.087 0.913 17 C 0.032 3.968 18 N -0.387 5.387 19 C -0.376 4.376 20 H 0.093 0.907 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.802 3.198 24 H -0.190 1.190 25 H -0.221 1.221 26 H -0.221 1.221 27 C -0.150 4.150 28 N -0.094 5.094 29 N -0.067 5.067 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.138 0.862 37 H 0.257 0.743 38 H 0.250 0.750 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.038 0.962 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.104 0.896 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.762 -35.331 -4.021 37.152 hybrid contribution 0.013 1.354 0.601 1.482 sum -10.749 -33.976 -3.420 35.800 Atomic orbital electron populations 1.22980 0.78637 1.04352 1.00971 1.87751 1.21955 1.26582 1.95688 1.22570 0.92398 0.85677 1.01964 1.22038 0.92633 0.76391 1.08824 1.50471 1.29955 1.14011 1.19122 1.23900 0.90527 0.93859 0.95588 1.21491 1.08154 0.96700 0.99997 1.16921 0.80036 0.81328 0.82658 1.90794 1.50123 1.76909 1.26612 1.46004 1.45151 1.12398 1.31569 1.21606 0.91699 0.89684 0.92482 0.89128 1.22705 0.99917 0.94768 0.98781 1.22395 1.00620 0.95800 0.95819 1.22023 0.98283 0.94349 0.96191 0.91322 1.20876 0.95239 0.84350 0.96382 1.42578 1.16607 1.03545 1.75968 1.19706 0.96951 0.87649 1.33257 0.90697 1.25551 0.98232 1.00570 1.02507 1.69826 1.18478 1.23646 1.50169 0.85083 0.78393 0.79548 0.76808 1.19015 1.22075 1.22070 1.22336 1.02331 0.91671 0.98646 1.74638 1.04327 1.19708 1.10701 1.81953 1.20851 0.91159 1.12698 0.93297 0.93132 0.87721 0.92342 0.92289 0.83472 0.86193 0.74345 0.74981 0.91308 0.91210 0.91778 0.92966 0.96029 0.96233 0.79442 0.94088 0.89580 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 113.37 1.25 1.39 16 2 O -0.40 -3.67 10.70 -148.98 -1.59 -5.26 16 3 C 0.05 0.40 6.15 71.99 0.44 0.84 16 4 C 0.12 0.60 6.91 86.38 0.60 1.20 16 5 N -0.35 -4.17 3.69 -347.10 -1.28 -5.45 16 6 C 0.12 1.48 11.27 83.85 0.95 2.43 16 7 C -0.12 -2.44 6.99 40.82 0.29 -2.15 16 8 C 0.61 14.08 7.81 86.69 0.68 14.76 16 9 O -0.57 -15.70 16.53 -4.00 -0.07 -15.77 16 10 N -0.70 -15.32 5.04 -442.26 -2.23 -17.55 16 11 C 0.15 3.52 3.23 45.72 0.15 3.67 16 12 H 0.09 2.23 7.59 -2.39 -0.02 2.21 16 13 C -0.12 -3.19 6.54 31.70 0.21 -2.98 16 14 C -0.11 -3.37 6.19 31.91 0.20 -3.17 16 15 C -0.09 -2.81 2.89 -9.72 -0.03 -2.84 16 16 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 17 C 0.16 6.30 5.54 86.38 0.48 6.78 16 18 N -0.74 -38.47 5.49 -343.47 -1.89 -40.36 16 19 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 20 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 21 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 22 N -0.97 -60.35 13.06 21.65 0.28 -60.06 16 23 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 C -0.11 -2.65 6.14 31.32 0.19 -2.46 16 28 N -0.22 -4.81 12.04 -49.99 -0.60 -5.41 16 29 N -0.09 -1.67 13.65 37.02 0.51 -1.17 16 30 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.10 0.28 8.14 -2.38 -0.02 0.27 16 33 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.15 -0.14 8.08 -2.39 -0.02 -0.16 16 36 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.24 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.41 8.22 7.99 -92.71 -0.74 7.48 16 39 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 40 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.06 2.06 7.97 -2.38 -0.02 2.04 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.02 0.87 8.02 -2.39 -0.02 0.85 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.37 20.53 7.64 -92.71 -0.71 19.83 16 46 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.09 1.95 7.84 -2.39 -0.02 1.93 16 48 H 0.09 1.80 7.61 -2.38 -0.02 1.79 16 Total: -1.00 -75.26 403.63 1.38 -73.87 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -0.47 Total: 27.85 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 6.70 Total: 0.43 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -5.21 Total: -130.00 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -1.66 Total: -21.03 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -75.26 1.38 -73.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717870083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.939 kcal (2) G-P(sol) polarization free energy of solvation -75.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds