Wall clock time and date at job start Tue Mar 31 2020 21:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37362 * 125.83489 * 2 1 4 4 N 1.29397 * 108.83084 * 179.73351 * 3 2 1 5 5 N 1.40169 * 108.13899 * 0.38120 * 4 3 2 6 6 C 1.46507 * 126.34813 * 179.88326 * 5 4 3 7 7 C 1.53003 * 109.46881 * 269.68592 * 6 5 4 8 8 C 1.50696 * 109.47320 * 180.02562 * 7 6 5 9 9 O 1.21288 * 119.99805 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00348 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00088 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.01964 * 33.60807 * 11 10 8 13 13 C 1.54463 * 109.85945 * 272.16848 * 11 10 8 14 14 C 1.54890 * 104.10368 * 264.10431 * 13 11 10 15 15 C 1.54887 * 102.91108 * 322.30112 * 14 13 11 16 16 H 1.09004 * 110.48634 * 279.03637 * 15 14 13 17 17 C 1.53000 * 110.48663 * 156.52843 * 15 14 13 18 18 N 1.46505 * 109.47032 * 66.45010 * 17 15 14 19 19 C 1.36935 * 119.99718 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00499 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99958 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99955 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99793 * 359.97438 * 21 19 18 24 24 H 1.48491 * 109.47326 * 90.00026 * 23 21 19 25 25 H 1.48497 * 109.47121 * 210.00422 * 23 21 19 26 26 H 1.48506 * 109.47179 * 330.00019 * 23 21 19 27 27 C 1.53877 * 110.03222 * 155.00048 * 11 10 8 28 28 C 1.34816 * 125.83288 * 179.97438 * 2 1 3 29 29 O 1.21810 * 126.30073 * 0.02562 * 28 2 1 30 30 H 1.09002 * 109.47164 * 270.02630 * 1 2 3 31 31 H 1.09004 * 109.47266 * 30.02341 * 1 2 3 32 32 H 1.09001 * 109.47618 * 150.02192 * 1 2 3 33 33 H 1.07995 * 125.58005 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.47177 * 149.69405 * 6 5 4 35 35 H 1.08997 * 109.47400 * 29.68776 * 6 5 4 36 36 H 1.08999 * 109.46985 * 59.99834 * 7 6 5 37 37 H 1.08997 * 109.47253 * 300.00273 * 7 6 5 38 38 H 0.97006 * 119.99423 * 0.02562 * 10 8 7 39 39 H 1.09003 * 110.40626 * 145.51456 * 13 11 10 40 40 H 1.09003 * 110.65885 * 22.81681 * 13 11 10 41 41 H 1.09002 * 110.75897 * 203.89231 * 14 13 11 42 42 H 1.09006 * 110.75292 * 80.70460 * 14 13 11 43 43 H 1.09002 * 109.47302 * 186.45054 * 17 15 14 44 44 H 1.08997 * 109.46938 * 306.45543 * 17 15 14 45 45 H 0.97000 * 119.99872 * 0.02562 * 18 17 15 46 46 H 0.97002 * 119.99583 * 179.97438 * 22 21 19 47 47 H 1.08995 * 110.02951 * 0.02562 * 27 11 10 48 48 H 1.08998 * 110.07557 * 238.58831 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7352 0.0057 5 7 3.5343 -0.6662 0.0008 6 6 4.7313 -1.5110 0.0021 7 6 5.1487 -1.8063 -1.4399 8 6 6.3795 -2.6757 -1.4387 9 8 6.8740 -3.0252 -0.3877 10 7 6.9310 -3.0650 -2.6053 11 6 8.1278 -3.9097 -2.6039 12 1 8.1052 -4.5876 -1.7506 13 6 9.3936 -3.0262 -2.5486 14 6 9.8249 -2.8914 -4.0301 15 6 9.5193 -4.2953 -4.6086 16 1 10.3215 -4.9916 -4.3641 17 6 9.3219 -4.2187 -6.1239 18 7 10.5873 -3.8490 -6.7631 19 6 10.6540 -3.7185 -8.1246 20 1 9.7739 -3.8878 -8.7272 21 6 11.8531 -3.3687 -8.7303 22 7 11.9171 -3.2428 -10.0389 23 14 13.3752 -3.0752 -7.6881 24 1 14.1167 -4.3513 -7.5245 25 1 14.2483 -2.0776 -8.3571 26 1 12.9706 -2.5633 -6.3541 27 6 8.2071 -4.7135 -3.9137 28 6 2.2542 -1.0930 0.0005 29 8 1.8805 -2.2524 0.0006 30 1 -0.3633 0.0005 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.9249 2.1372 -0.0004 34 1 4.5147 -2.4472 0.5165 35 1 5.5411 -0.9930 0.5159 36 1 5.3652 -0.8701 -1.9545 37 1 4.3389 -2.3243 -1.9537 38 1 6.5357 -2.7851 -3.4458 39 1 10.1743 -3.5166 -1.9670 40 1 9.1614 -2.0476 -2.1283 41 1 10.8889 -2.6664 -4.1038 42 1 9.2342 -2.1280 -4.5364 43 1 8.9962 -5.1896 -6.4974 44 1 8.5657 -3.4684 -6.3543 45 1 11.3777 -3.6966 -6.2219 46 1 12.7549 -2.9980 -10.4621 47 1 7.3553 -4.4747 -4.5504 48 1 8.2235 -5.7816 -3.6968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717876320.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:11 Heat of formation + Delta-G solvation = 14.798519 kcal Electronic energy + Delta-G solvation = -28381.815678 eV Core-core repulsion = 24280.984928 eV Total energy + Delta-G solvation = -4100.830750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.83047 -40.22682 -38.24309 -37.64102 -36.08931 -34.97042 -33.46879 -33.10680 -31.34341 -30.32586 -29.07058 -28.25554 -27.67425 -25.24150 -24.32145 -22.82281 -21.92076 -21.61608 -20.85804 -20.23276 -19.62231 -18.21763 -17.52835 -17.36071 -17.01812 -16.57061 -16.32883 -15.99828 -15.65258 -15.35945 -15.00661 -14.44148 -14.41071 -14.16637 -13.88561 -13.53227 -13.34105 -13.29457 -13.19824 -13.10954 -12.73615 -12.64210 -12.32037 -12.19558 -11.86515 -11.75523 -11.58746 -11.34482 -10.91700 -10.91468 -10.65864 -10.59154 -10.53858 -10.37727 -10.34633 -10.06364 -10.01670 -9.58432 -9.16706 -8.99572 -8.88790 -7.21901 -5.76704 -3.11644 1.30707 1.50059 2.25279 2.41748 2.62678 3.07635 3.37414 3.40382 3.45400 3.96849 4.25609 4.37390 4.47030 4.53728 4.59373 4.62990 4.66938 4.70575 4.77948 4.95711 4.96106 5.05682 5.25036 5.32191 5.38602 5.48107 5.49260 5.51528 5.55331 5.63613 5.73919 5.75911 5.81851 5.91609 5.98729 6.02578 6.08081 6.19231 6.37045 6.43959 6.49978 6.69195 6.80816 7.17698 7.31134 7.62422 7.99916 8.01266 8.42642 9.22268 9.94788 10.15096 11.41824 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.001794 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.574058 B =15607.844910 C =16027.955905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.563 5.563 3 C 0.253 3.747 4 N -0.279 5.279 5 N -0.451 5.451 6 C 0.178 3.822 7 C -0.162 4.162 8 C 0.521 3.479 9 O -0.543 6.543 10 N -0.718 5.718 11 C 0.141 3.859 12 H 0.089 0.911 13 C -0.132 4.132 14 C -0.115 4.115 15 C -0.102 4.102 16 H 0.076 0.924 17 C 0.165 3.835 18 N -0.755 5.755 19 C -0.243 4.243 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.122 4.122 28 C 0.642 3.358 29 O -0.552 6.552 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.402 0.598 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.074 0.926 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.149 9.163 23.534 34.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.293 5.293 3 C -0.046 4.046 4 N -0.100 5.100 5 N -0.272 5.272 6 C 0.057 3.943 7 C -0.203 4.203 8 C 0.307 3.693 9 O -0.421 6.421 10 N -0.369 5.369 11 C 0.036 3.964 12 H 0.108 0.892 13 C -0.171 4.171 14 C -0.153 4.153 15 C -0.121 4.121 16 H 0.095 0.905 17 C 0.038 3.962 18 N -0.401 5.401 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.583 5.583 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.160 4.160 28 C 0.341 3.659 29 O -0.425 6.425 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.247 0.753 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.237 0.763 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.104 8.305 24.054 33.707 hybrid contribution 0.181 0.334 0.023 0.380 sum -21.923 8.639 24.077 33.689 Atomic orbital electron populations 1.21839 0.74093 1.04853 1.03608 1.45968 1.08984 1.06707 1.67593 1.25974 0.85825 0.94802 0.98012 1.77045 1.18168 0.91965 1.22842 1.49034 1.06221 1.03137 1.68851 1.21177 0.83354 0.93687 0.96095 1.22056 0.97283 1.01513 0.99440 1.20253 0.84649 0.80335 0.84070 1.90724 1.63814 1.56450 1.31106 1.46228 1.29783 1.52490 1.08447 1.21716 0.83876 0.91720 0.99053 0.89242 1.22819 0.96806 0.99824 0.97662 1.22528 1.01624 0.97162 0.93936 1.22229 0.96663 0.96981 0.96276 0.90541 1.20663 0.89340 0.97552 0.88641 1.42697 1.07351 1.85232 1.04773 1.19068 0.97278 1.39540 0.81450 0.89306 1.24677 0.97439 1.01758 0.95389 1.69704 1.26102 1.54751 1.07750 0.86541 0.84216 0.77865 0.79873 1.21107 1.21760 1.20305 1.22435 0.98902 0.99846 0.94851 1.16819 0.82170 0.85152 0.81739 1.91109 1.77691 1.15189 1.58491 0.90832 0.89215 0.89332 0.75257 0.87790 0.87729 0.87909 0.88298 0.76307 0.90973 0.91525 0.91508 0.91202 0.95644 0.95671 0.80649 0.93095 0.90709 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.25 11.05 59.84 0.66 0.91 16 2 N -0.56 -3.53 3.14 -130.11 -0.41 -3.94 16 3 C 0.25 1.12 12.66 -89.12 -1.13 -0.01 16 4 N -0.28 -2.23 12.53 29.87 0.37 -1.86 16 5 N -0.45 -4.38 3.63 -65.12 -0.24 -4.62 16 6 C 0.18 1.68 5.68 -4.04 -0.02 1.66 16 7 C -0.16 -1.37 6.02 -27.88 -0.17 -1.54 16 8 C 0.52 5.65 7.83 -10.99 -0.09 5.56 16 9 O -0.54 -7.69 15.64 5.55 0.09 -7.60 16 10 N -0.72 -7.13 5.02 -52.62 -0.26 -7.40 16 11 C 0.14 1.58 3.26 -66.71 -0.22 1.37 16 12 H 0.09 1.09 7.56 -51.93 -0.39 0.69 16 13 C -0.13 -1.60 6.55 -24.97 -0.16 -1.77 16 14 C -0.11 -1.61 6.00 -24.74 -0.15 -1.76 16 15 C -0.10 -1.48 2.93 -88.96 -0.26 -1.74 16 16 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 17 C 0.17 3.08 5.54 -4.04 -0.02 3.05 16 18 N -0.76 -17.79 5.25 -59.90 -0.31 -18.10 16 19 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 21 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 22 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 23 Si 0.88 22.21 27.73 -169.99 -4.71 17.49 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 27 C -0.12 -1.39 6.14 -25.61 -0.16 -1.54 16 28 C 0.64 6.80 8.60 -86.74 -0.75 6.06 16 29 O -0.55 -7.76 17.71 5.09 0.09 -7.67 16 30 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.09 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.23 -0.23 8.06 -52.49 -0.42 -0.66 16 34 H 0.10 1.09 8.07 -51.93 -0.42 0.67 16 35 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 3.26 8.32 -40.82 -0.34 2.92 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.82 8.04 -51.93 -0.42 0.41 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.01 8.02 -51.93 -0.42 0.60 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.03 0.47 8.10 -51.93 -0.42 0.05 16 45 H 0.36 8.32 5.38 -40.82 -0.22 8.10 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 47 H 0.07 0.80 7.31 -51.93 -0.38 0.42 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -38.60 398.27 -8.99 -47.59 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.66 Total: 5.64 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.71 Total: 3.18 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.07 Total: -64.63 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.18 Total: -15.28 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.60 -8.99 -47.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717876320.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.389 kcal (2) G-P(sol) polarization free energy of solvation -38.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds