Wall clock time and date at job start Tue Mar 31 2020 21:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37362 * 125.83489 * 2 1 4 4 N 1.29397 * 108.83084 * 179.73351 * 3 2 1 5 5 N 1.40169 * 108.13899 * 0.38120 * 4 3 2 6 6 C 1.46507 * 126.34813 * 179.88326 * 5 4 3 7 7 C 1.53003 * 109.46881 * 269.68592 * 6 5 4 8 8 C 1.50696 * 109.47320 * 180.02562 * 7 6 5 9 9 O 1.21288 * 119.99805 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00348 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00088 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.01964 * 33.60807 * 11 10 8 13 13 C 1.54463 * 109.85945 * 272.16848 * 11 10 8 14 14 C 1.54890 * 104.10368 * 264.10431 * 13 11 10 15 15 C 1.54887 * 102.91108 * 322.30112 * 14 13 11 16 16 H 1.09004 * 110.48634 * 279.03637 * 15 14 13 17 17 C 1.53000 * 110.48663 * 156.52843 * 15 14 13 18 18 N 1.46505 * 109.47032 * 66.45010 * 17 15 14 19 19 C 1.36935 * 119.99718 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00499 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99958 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99955 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99793 * 359.97438 * 21 19 18 24 24 H 1.48491 * 109.47326 * 90.00026 * 23 21 19 25 25 H 1.48497 * 109.47121 * 210.00422 * 23 21 19 26 26 H 1.48506 * 109.47179 * 330.00019 * 23 21 19 27 27 C 1.53877 * 110.03222 * 155.00048 * 11 10 8 28 28 C 1.34816 * 125.83288 * 179.97438 * 2 1 3 29 29 O 1.21810 * 126.30073 * 0.02562 * 28 2 1 30 30 H 1.09002 * 109.47164 * 270.02630 * 1 2 3 31 31 H 1.09004 * 109.47266 * 30.02341 * 1 2 3 32 32 H 1.09001 * 109.47618 * 150.02192 * 1 2 3 33 33 H 1.07995 * 125.58005 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.47177 * 149.69405 * 6 5 4 35 35 H 1.08997 * 109.47400 * 29.68776 * 6 5 4 36 36 H 1.08999 * 109.46985 * 59.99834 * 7 6 5 37 37 H 1.08997 * 109.47253 * 300.00273 * 7 6 5 38 38 H 0.97006 * 119.99423 * 0.02562 * 10 8 7 39 39 H 1.09003 * 110.40626 * 145.51456 * 13 11 10 40 40 H 1.09003 * 110.65885 * 22.81681 * 13 11 10 41 41 H 1.09002 * 110.75897 * 203.89231 * 14 13 11 42 42 H 1.09006 * 110.75292 * 80.70460 * 14 13 11 43 43 H 1.09002 * 109.47302 * 186.45054 * 17 15 14 44 44 H 1.08997 * 109.46938 * 306.45543 * 17 15 14 45 45 H 0.97000 * 119.99872 * 0.02562 * 18 17 15 46 46 H 0.97002 * 119.99583 * 179.97438 * 22 21 19 47 47 H 1.08995 * 110.02951 * 0.02562 * 27 11 10 48 48 H 1.08998 * 110.07557 * 238.58831 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7352 0.0057 5 7 3.5343 -0.6662 0.0008 6 6 4.7313 -1.5110 0.0021 7 6 5.1487 -1.8063 -1.4399 8 6 6.3795 -2.6757 -1.4387 9 8 6.8740 -3.0252 -0.3877 10 7 6.9310 -3.0650 -2.6053 11 6 8.1278 -3.9097 -2.6039 12 1 8.1052 -4.5876 -1.7506 13 6 9.3936 -3.0262 -2.5486 14 6 9.8249 -2.8914 -4.0301 15 6 9.5193 -4.2953 -4.6086 16 1 10.3215 -4.9916 -4.3641 17 6 9.3219 -4.2187 -6.1239 18 7 10.5873 -3.8490 -6.7631 19 6 10.6540 -3.7185 -8.1246 20 1 9.7739 -3.8878 -8.7272 21 6 11.8531 -3.3687 -8.7303 22 7 11.9171 -3.2428 -10.0389 23 14 13.3752 -3.0752 -7.6881 24 1 14.1167 -4.3513 -7.5245 25 1 14.2483 -2.0776 -8.3571 26 1 12.9706 -2.5633 -6.3541 27 6 8.2071 -4.7135 -3.9137 28 6 2.2542 -1.0930 0.0005 29 8 1.8805 -2.2524 0.0006 30 1 -0.3633 0.0005 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.9249 2.1372 -0.0004 34 1 4.5147 -2.4472 0.5165 35 1 5.5411 -0.9930 0.5159 36 1 5.3652 -0.8701 -1.9545 37 1 4.3389 -2.3243 -1.9537 38 1 6.5357 -2.7851 -3.4458 39 1 10.1743 -3.5166 -1.9670 40 1 9.1614 -2.0476 -2.1283 41 1 10.8889 -2.6664 -4.1038 42 1 9.2342 -2.1280 -4.5364 43 1 8.9962 -5.1896 -6.4974 44 1 8.5657 -3.4684 -6.3543 45 1 11.3777 -3.6966 -6.2219 46 1 12.7549 -2.9980 -10.4621 47 1 7.3553 -4.4747 -4.5504 48 1 8.2235 -5.7816 -3.6968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717876320.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:09 Heat of formation + Delta-G solvation = -12.282991 kcal Electronic energy + Delta-G solvation = -28382.990020 eV Core-core repulsion = 24280.984928 eV Total energy + Delta-G solvation = -4102.005092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.40762 -41.14905 -39.32740 -38.42556 -36.78604 -36.48542 -34.72003 -33.82456 -33.19642 -31.09105 -30.33344 -29.19737 -28.23352 -26.34877 -25.49831 -23.69631 -23.37313 -22.32283 -21.74348 -21.25219 -20.79101 -19.53877 -18.85702 -18.00003 -17.73929 -17.38029 -17.09420 -16.74491 -16.65823 -16.42529 -16.15963 -15.90837 -15.45326 -15.05414 -14.97227 -14.62734 -14.47421 -14.32421 -14.20167 -13.89564 -13.69628 -13.53058 -13.49764 -13.23335 -12.88675 -12.87887 -12.69493 -12.51060 -12.38135 -12.14436 -11.99058 -11.84963 -11.68762 -11.60483 -11.48356 -11.39055 -11.16512 -10.95009 -10.86214 -10.07260 -9.66728 -9.27588 -8.02717 -5.35276 0.72742 1.08489 1.37574 1.40787 1.48177 1.54141 1.55792 2.09929 2.36433 2.48368 3.28793 3.44430 3.49172 3.55724 3.64217 3.81925 3.91481 3.95814 3.98998 4.12023 4.28116 4.33324 4.41647 4.50458 4.52232 4.53399 4.60768 4.65434 4.66828 4.70581 4.71932 4.82354 4.92074 4.95381 5.01140 5.09495 5.10305 5.15158 5.21714 5.34400 5.51092 5.60853 5.68922 5.76325 6.21766 6.49868 6.62828 6.93032 7.08951 7.18271 7.86323 8.05110 9.18907 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.001794 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.574058 B =15607.844910 C =16027.955905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.559 5.559 3 C 0.280 3.720 4 N -0.316 5.316 5 N -0.458 5.458 6 C 0.179 3.821 7 C -0.146 4.146 8 C 0.523 3.477 9 O -0.578 6.578 10 N -0.711 5.711 11 C 0.146 3.854 12 H 0.085 0.915 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.095 4.095 16 H 0.078 0.922 17 C 0.161 3.839 18 N -0.757 5.757 19 C -0.234 4.234 20 H 0.056 0.944 21 C -0.066 4.066 22 N -0.984 5.984 23 Si 0.955 3.045 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.250 1.250 27 C -0.112 4.112 28 C 0.624 3.376 29 O -0.600 6.600 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.288 0.712 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.413 0.587 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.023 0.977 44 H 0.027 0.973 45 H 0.366 0.634 46 H 0.257 0.743 47 H 0.084 0.916 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.070 10.857 25.340 36.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.018 4.018 4 N -0.137 5.137 5 N -0.277 5.277 6 C 0.057 3.943 7 C -0.187 4.187 8 C 0.310 3.690 9 O -0.458 6.458 10 N -0.362 5.362 11 C 0.041 3.959 12 H 0.103 0.897 13 C -0.162 4.162 14 C -0.151 4.151 15 C -0.114 4.114 16 H 0.096 0.904 17 C 0.035 3.965 18 N -0.403 5.403 19 C -0.365 4.365 20 H 0.074 0.926 21 C -0.257 4.257 22 N -0.635 5.635 23 Si 0.782 3.218 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.175 1.175 27 C -0.150 4.150 28 C 0.323 3.677 29 O -0.477 6.477 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.090 0.910 33 H 0.303 0.697 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.250 0.750 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.041 0.959 44 H 0.045 0.955 45 H 0.199 0.801 46 H 0.066 0.934 47 H 0.102 0.898 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.082 10.033 25.888 36.105 hybrid contribution 0.298 -0.144 -0.563 0.653 sum -22.784 9.889 25.325 35.471 Atomic orbital electron populations 1.22169 0.71873 1.06110 1.04777 1.46192 1.10214 1.05998 1.66224 1.27142 0.84429 0.96111 0.94121 1.77073 1.20300 0.90483 1.25840 1.49038 1.05831 1.04174 1.68684 1.21041 0.83537 0.93140 0.96533 1.21924 0.96130 1.01659 0.99009 1.20568 0.84866 0.79984 0.83615 1.90711 1.64921 1.57815 1.32361 1.46161 1.29308 1.51949 1.08814 1.21584 0.84005 0.91615 0.98701 0.89728 1.22739 0.97264 0.99979 0.96255 1.22476 1.00829 0.96611 0.95144 1.22118 0.98453 0.97549 0.93239 0.90397 1.20858 0.87262 0.97058 0.91288 1.42717 1.09361 1.85154 1.03054 1.19064 0.96065 1.37888 0.83473 0.92599 1.25518 1.01066 1.02486 0.96638 1.69888 1.26928 1.56757 1.09940 0.85412 0.79585 0.77724 0.79103 1.20521 1.22282 1.17486 1.22352 0.97449 1.00645 0.94563 1.17153 0.82932 0.85526 0.82088 1.91053 1.78552 1.17325 1.60798 0.89752 0.85000 0.91022 0.69686 0.89638 0.87829 0.86359 0.87929 0.75038 0.90462 0.91691 0.92652 0.91734 0.95920 0.95516 0.80123 0.93387 0.89776 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.25 11.05 127.77 1.41 1.66 16 2 N -0.56 -5.93 3.14 -683.70 -2.15 -8.08 16 3 C 0.28 1.58 12.66 179.82 2.28 3.85 16 4 N -0.32 -4.49 12.53 -59.42 -0.74 -5.23 16 5 N -0.46 -8.76 3.63 -478.00 -1.73 -10.49 16 6 C 0.18 3.46 5.68 86.38 0.49 3.95 16 7 C -0.15 -2.39 6.02 29.85 0.18 -2.21 16 8 C 0.52 10.90 7.83 87.66 0.69 11.58 16 9 O -0.58 -16.23 15.64 -3.06 -0.05 -16.28 16 10 N -0.71 -12.95 5.02 -438.78 -2.20 -15.15 16 11 C 0.15 3.00 3.26 45.79 0.15 3.15 16 12 H 0.08 1.91 7.56 -2.39 -0.02 1.89 16 13 C -0.12 -2.75 6.55 31.74 0.21 -2.55 16 14 C -0.11 -2.95 6.00 31.88 0.19 -2.76 16 15 C -0.09 -2.53 2.93 -9.72 -0.03 -2.56 16 16 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 17 C 0.16 5.81 5.54 86.38 0.48 6.29 16 18 N -0.76 -34.93 5.25 -343.44 -1.80 -36.73 16 19 C -0.23 -13.39 10.47 84.04 0.88 -12.51 16 20 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.98 -63.43 13.97 21.65 0.30 -63.13 16 23 Si 0.95 45.62 27.73 68.60 1.90 47.52 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.25 -10.73 6.52 99.48 0.65 -10.09 16 27 C -0.11 -2.28 6.14 31.32 0.19 -2.08 16 28 C 0.62 13.20 8.60 178.99 1.54 14.74 16 29 O -0.60 -17.62 17.71 -4.70 -0.08 -17.70 16 30 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.13 -0.75 8.14 -2.38 -0.02 -0.76 16 32 H 0.07 0.48 8.08 -2.39 -0.02 0.47 16 33 H 0.29 -2.17 8.06 -2.91 -0.02 -2.19 16 34 H 0.09 1.93 8.07 -2.39 -0.02 1.91 16 35 H 0.10 1.96 8.10 -2.39 -0.02 1.94 16 36 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.41 5.83 8.32 -92.70 -0.77 5.06 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.49 8.04 -2.39 -0.02 1.47 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.75 8.02 -2.38 -0.02 1.73 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 45 H 0.37 16.13 5.38 -92.71 -0.50 15.63 16 46 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 47 H 0.08 1.59 7.31 -2.39 -0.02 1.57 16 48 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -87.28 398.27 2.21 -85.07 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.35 Total: 23.08 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 9.12 Total: 17.13 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -8.33 Total: -138.81 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.13 Total: -33.98 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Total: -87.28 2.21 -85.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717876320.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.785 kcal (2) G-P(sol) polarization free energy of solvation -87.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds