Wall clock time and date at job start Tue Mar 31 2020 21:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37359 * 125.83384 * 2 1 4 4 N 1.29393 * 108.82850 * 180.02562 * 3 2 1 5 5 N 1.40168 * 108.14308 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.35259 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46984 * 270.02711 * 6 5 4 8 8 C 1.50699 * 109.46741 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00415 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99688 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99931 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.54238 * 32.38252 * 11 10 8 13 13 C 1.54897 * 110.48719 * 269.76959 * 11 10 8 14 14 C 1.54963 * 102.77701 * 203.40502 * 13 11 10 15 15 C 1.54261 * 104.16060 * 37.88971 * 14 13 11 16 16 H 1.09000 * 110.03667 * 95.75392 * 15 14 13 17 17 C 1.53004 * 110.03255 * 217.13385 * 15 14 13 18 18 N 1.46504 * 109.46932 * 292.91019 * 17 15 14 19 19 C 1.36934 * 119.99567 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00537 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99798 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00134 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00229 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47228 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46793 * 299.99987 * 23 21 19 26 26 H 1.48500 * 109.47000 * 60.00079 * 23 21 19 27 27 C 1.53879 * 106.64349 * 336.44366 * 15 14 13 28 28 C 1.34817 * 125.82937 * 180.33731 * 2 1 3 29 29 O 1.21809 * 126.30529 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.46987 * 359.97154 * 1 2 3 31 31 H 1.08993 * 109.47304 * 119.97278 * 1 2 3 32 32 H 1.09002 * 109.46962 * 239.97632 * 1 2 3 33 33 H 1.08002 * 125.58454 * 0.03978 * 3 2 1 34 34 H 1.08993 * 109.47465 * 150.02170 * 6 5 4 35 35 H 1.09001 * 109.46734 * 30.02026 * 6 5 4 36 36 H 1.08993 * 109.47461 * 59.99456 * 7 6 5 37 37 H 1.09001 * 109.46826 * 299.99259 * 7 6 5 38 38 H 0.97003 * 120.00633 * 359.97438 * 10 8 7 39 39 H 1.08999 * 110.75157 * 321.69791 * 13 11 10 40 40 H 1.08999 * 110.75001 * 84.87806 * 13 11 10 41 41 H 1.08996 * 110.47737 * 279.23138 * 14 13 11 42 42 H 1.09006 * 110.52598 * 156.56764 * 14 13 11 43 43 H 1.08998 * 109.47524 * 172.90663 * 17 15 14 44 44 H 1.08997 * 109.47093 * 52.90564 * 17 15 14 45 45 H 0.97000 * 119.99825 * 359.97438 * 18 17 15 46 46 H 0.97005 * 119.99717 * 0.02562 * 22 21 19 47 47 H 1.08993 * 110.03606 * 119.26180 * 27 15 14 48 48 H 1.08996 * 110.02960 * 240.69399 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0015 6 6 4.7313 -1.5110 -0.0029 7 6 5.1474 -1.8036 -1.4460 8 6 6.3782 -2.6731 -1.4473 9 8 6.8741 -3.0238 -0.3976 10 7 6.9285 -3.0601 -2.6151 11 6 8.1254 -3.9049 -2.6165 12 1 8.1228 -4.5733 -1.7555 13 6 9.4050 -3.0321 -2.6214 14 6 10.4681 -3.9859 -3.2226 15 6 9.7030 -4.7652 -4.3121 16 1 9.8541 -4.2946 -5.2836 17 6 10.1836 -6.2172 -4.3532 18 7 11.5718 -6.2590 -4.8197 19 6 12.2184 -7.4603 -4.9374 20 1 11.7054 -8.3768 -4.6861 21 6 13.5335 -7.5001 -5.3799 22 7 14.1588 -6.3832 -5.6868 23 14 14.4161 -9.1387 -5.5399 24 1 15.7994 -8.9102 -6.0290 25 1 14.4631 -9.8070 -4.2146 26 1 13.6870 -10.0015 -6.5039 27 6 8.2140 -4.7135 -3.9274 28 6 2.2542 -1.0930 -0.0064 29 8 1.8806 -2.2524 -0.0128 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5134 -0.8902 32 1 -0.3633 -0.5142 0.8898 33 1 1.9251 2.1373 0.0006 34 1 4.5153 -2.4481 0.5100 35 1 5.5416 -0.9939 0.5111 36 1 5.3634 -0.8665 -1.9589 37 1 4.3371 -2.3207 -1.9599 38 1 6.5322 -2.7793 -3.4548 39 1 9.2718 -2.1549 -3.2545 40 1 9.6753 -2.7374 -1.6074 41 1 10.8444 -4.6671 -2.4594 42 1 11.2863 -3.4167 -3.6641 43 1 9.5539 -6.7892 -5.0345 44 1 10.1230 -6.6484 -3.3540 45 1 12.0327 -5.4359 -5.0451 46 1 13.7006 -5.5322 -5.6033 47 1 7.6427 -4.2170 -4.7116 48 1 7.8339 -5.7228 -3.7699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717876322.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:21 Heat of formation + Delta-G solvation = 10.898457 kcal Electronic energy + Delta-G solvation = -28125.255503 eV Core-core repulsion = 24024.255634 eV Total energy + Delta-G solvation = -4100.999869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.86246 -40.17572 -38.23822 -37.66725 -36.12271 -35.02258 -33.64478 -33.18717 -31.11451 -30.29262 -28.74942 -28.14715 -27.44094 -25.13796 -23.99544 -22.83664 -22.38519 -21.63053 -20.76444 -20.54255 -19.50760 -18.25560 -17.40064 -17.18941 -17.04439 -16.55571 -16.44444 -16.03274 -15.59377 -15.28732 -15.02113 -14.57526 -14.23532 -13.92899 -13.71917 -13.68228 -13.42766 -13.35471 -13.22939 -13.15544 -13.08461 -12.73247 -12.36734 -12.21973 -11.84559 -11.65972 -11.40015 -10.99163 -10.73711 -10.71839 -10.67629 -10.60746 -10.49534 -10.35593 -10.14585 -10.05438 -9.93599 -9.16756 -9.10081 -9.02415 -8.83173 -6.95073 -6.06515 -3.05254 1.27495 1.46514 2.22485 2.40449 2.59173 3.03999 3.54486 3.58338 3.75639 3.91322 4.21086 4.33703 4.42971 4.52112 4.64795 4.65837 4.72389 4.73238 4.80185 4.92008 5.00254 5.02597 5.20912 5.35635 5.45368 5.45544 5.52780 5.55210 5.58119 5.67265 5.72837 5.80911 5.86966 6.04483 6.05613 6.08336 6.15414 6.23445 6.41396 6.49040 6.58218 6.75672 6.88509 7.14522 7.28752 7.59733 7.85133 8.00061 8.80317 9.28366 10.14737 10.30264 11.42318 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.040353 B = 0.001523 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.718012 B =18383.191179 C =18639.251623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.563 5.563 3 C 0.252 3.748 4 N -0.280 5.280 5 N -0.451 5.451 6 C 0.177 3.823 7 C -0.160 4.160 8 C 0.520 3.480 9 O -0.539 6.539 10 N -0.720 5.720 11 C 0.138 3.862 12 H 0.097 0.903 13 C -0.132 4.132 14 C -0.111 4.111 15 C -0.097 4.097 16 H 0.072 0.928 17 C 0.164 3.836 18 N -0.743 5.743 19 C -0.331 4.331 20 H 0.063 0.937 21 C -0.047 4.047 22 N -0.945 5.945 23 Si 1.080 2.920 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.296 1.296 27 C -0.121 4.121 28 C 0.641 3.359 29 O -0.550 6.550 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.400 0.600 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.017 0.983 44 H 0.021 0.979 45 H 0.367 0.633 46 H 0.254 0.746 47 H 0.066 0.934 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.041 20.420 10.081 37.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.293 5.293 3 C -0.047 4.047 4 N -0.101 5.101 5 N -0.272 5.272 6 C 0.056 3.944 7 C -0.202 4.202 8 C 0.306 3.694 9 O -0.416 6.416 10 N -0.371 5.371 11 C 0.034 3.966 12 H 0.115 0.885 13 C -0.171 4.171 14 C -0.149 4.149 15 C -0.116 4.116 16 H 0.091 0.909 17 C 0.037 3.963 18 N -0.389 5.389 19 C -0.462 4.462 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.591 5.591 23 Si 0.911 3.089 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.159 4.159 28 C 0.341 3.659 29 O -0.423 6.423 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.247 0.753 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.234 0.766 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.039 0.961 45 H 0.200 0.800 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.603 18.607 10.480 34.899 hybrid contribution -2.406 1.003 -0.200 2.615 sum -30.009 19.610 10.280 37.293 Atomic orbital electron populations 1.21818 0.74067 1.04206 1.04055 1.45983 1.08974 1.06715 1.67592 1.25988 0.85856 0.94746 0.98075 1.77030 1.18173 0.92015 1.22899 1.49039 1.06221 1.03100 1.68850 1.21192 0.83374 0.93775 0.96057 1.22049 0.97256 1.01378 0.99487 1.20257 0.84651 0.80414 0.84098 1.90742 1.63525 1.56156 1.31167 1.46114 1.29995 1.52650 1.08314 1.21973 0.83303 0.91819 0.99487 0.88522 1.22895 0.94842 0.98159 1.01221 1.22332 0.97032 0.97511 0.98060 1.21903 0.92895 0.97813 0.99036 0.90935 1.20732 0.86833 0.92040 0.96708 1.42355 1.09437 1.06158 1.80912 1.20050 0.97683 0.86179 1.42251 0.91851 1.25767 0.94056 1.04977 0.99584 1.70886 1.38921 0.97603 1.51688 0.83241 0.76193 0.73600 0.75872 1.21039 1.22283 1.22325 1.22396 0.97436 1.00453 0.95646 1.16820 0.82154 0.85144 0.81815 1.91116 1.77694 1.15188 1.58313 0.88791 0.90403 0.90413 0.75271 0.87701 0.87654 0.88027 0.88362 0.76607 0.91574 0.91363 0.90830 0.91422 0.96485 0.96136 0.80015 0.93474 0.91525 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.22 11.08 59.85 0.66 0.88 16 2 N -0.56 -3.33 3.14 -130.10 -0.41 -3.74 16 3 C 0.25 1.00 12.61 -89.13 -1.12 -0.12 16 4 N -0.28 -2.12 12.53 29.87 0.37 -1.75 16 5 N -0.45 -4.26 3.63 -65.12 -0.24 -4.50 16 6 C 0.18 1.66 5.68 -4.04 -0.02 1.64 16 7 C -0.16 -1.32 6.02 -27.88 -0.17 -1.48 16 8 C 0.52 5.72 7.83 -10.99 -0.09 5.64 16 9 O -0.54 -7.99 15.63 5.56 0.09 -7.90 16 10 N -0.72 -7.12 5.16 -52.19 -0.27 -7.39 16 11 C 0.14 1.70 3.22 -66.27 -0.21 1.49 16 12 H 0.10 1.39 7.56 -51.93 -0.39 0.99 16 13 C -0.13 -1.72 6.58 -24.69 -0.16 -1.88 16 14 C -0.11 -1.73 6.05 -25.04 -0.15 -1.88 16 15 C -0.10 -1.54 2.97 -89.50 -0.27 -1.81 16 16 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.16 3.38 5.31 -4.04 -0.02 3.36 16 18 N -0.74 -19.14 5.44 -59.91 -0.33 -19.47 16 19 C -0.33 -9.61 9.99 -15.06 -0.15 -9.76 16 20 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16 22 N -0.95 -29.72 13.70 55.49 0.76 -28.96 16 23 Si 1.08 26.47 29.92 -169.99 -5.09 21.38 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 27 C -0.12 -1.50 6.19 -25.61 -0.16 -1.66 16 28 C 0.64 6.65 8.61 -86.73 -0.75 5.91 16 29 O -0.55 -7.70 17.77 5.09 0.09 -7.61 16 30 H 0.09 -0.15 8.07 -51.93 -0.42 -0.56 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.23 -0.36 8.06 -52.49 -0.42 -0.79 16 34 H 0.10 1.11 8.07 -51.93 -0.42 0.69 16 35 H 0.11 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.40 2.85 8.37 -40.82 -0.34 2.51 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.28 7.77 -51.93 -0.40 0.88 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.44 8.02 -51.93 -0.42 0.02 16 45 H 0.37 9.58 6.36 -40.82 -0.26 9.32 16 46 H 0.25 7.85 6.77 -40.82 -0.28 7.58 16 47 H 0.07 0.69 7.73 -51.93 -0.40 0.29 16 48 H 0.07 0.95 7.67 -51.93 -0.40 0.55 16 LS Contribution 399.51 15.07 6.02 6.02 Total: -1.00 -39.66 399.51 -9.28 -48.94 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.58 Total: 6.12 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.70 Total: -1.15 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.11 Total: -65.80 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.18 Total: -15.52 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -5.09 Total: 21.38 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.66 -9.28 -48.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717876322.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.836 kcal (2) G-P(sol) polarization free energy of solvation -39.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds