Wall clock time and date at job start Tue Mar 31 2020 21:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37359 * 125.83384 * 2 1 4 4 N 1.29393 * 108.82850 * 180.02562 * 3 2 1 5 5 N 1.40168 * 108.14308 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.35259 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46984 * 270.02711 * 6 5 4 8 8 C 1.50699 * 109.46741 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00415 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99688 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99931 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.54238 * 32.38252 * 11 10 8 13 13 C 1.54897 * 110.48719 * 269.76959 * 11 10 8 14 14 C 1.54963 * 102.77701 * 203.40502 * 13 11 10 15 15 C 1.54261 * 104.16060 * 37.88971 * 14 13 11 16 16 H 1.09000 * 110.03667 * 95.75392 * 15 14 13 17 17 C 1.53004 * 110.03255 * 217.13385 * 15 14 13 18 18 N 1.46504 * 109.46932 * 292.91019 * 17 15 14 19 19 C 1.36934 * 119.99567 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00537 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99798 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00134 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00229 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47228 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46793 * 299.99987 * 23 21 19 26 26 H 1.48500 * 109.47000 * 60.00079 * 23 21 19 27 27 C 1.53879 * 106.64349 * 336.44366 * 15 14 13 28 28 C 1.34817 * 125.82937 * 180.33731 * 2 1 3 29 29 O 1.21809 * 126.30529 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.46987 * 359.97154 * 1 2 3 31 31 H 1.08993 * 109.47304 * 119.97278 * 1 2 3 32 32 H 1.09002 * 109.46962 * 239.97632 * 1 2 3 33 33 H 1.08002 * 125.58454 * 0.03978 * 3 2 1 34 34 H 1.08993 * 109.47465 * 150.02170 * 6 5 4 35 35 H 1.09001 * 109.46734 * 30.02026 * 6 5 4 36 36 H 1.08993 * 109.47461 * 59.99456 * 7 6 5 37 37 H 1.09001 * 109.46826 * 299.99259 * 7 6 5 38 38 H 0.97003 * 120.00633 * 359.97438 * 10 8 7 39 39 H 1.08999 * 110.75157 * 321.69791 * 13 11 10 40 40 H 1.08999 * 110.75001 * 84.87806 * 13 11 10 41 41 H 1.08996 * 110.47737 * 279.23138 * 14 13 11 42 42 H 1.09006 * 110.52598 * 156.56764 * 14 13 11 43 43 H 1.08998 * 109.47524 * 172.90663 * 17 15 14 44 44 H 1.08997 * 109.47093 * 52.90564 * 17 15 14 45 45 H 0.97000 * 119.99825 * 359.97438 * 18 17 15 46 46 H 0.97005 * 119.99717 * 0.02562 * 22 21 19 47 47 H 1.08993 * 110.03606 * 119.26180 * 27 15 14 48 48 H 1.08996 * 110.02960 * 240.69399 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0015 6 6 4.7313 -1.5110 -0.0029 7 6 5.1474 -1.8036 -1.4460 8 6 6.3782 -2.6731 -1.4473 9 8 6.8741 -3.0238 -0.3976 10 7 6.9285 -3.0601 -2.6151 11 6 8.1254 -3.9049 -2.6165 12 1 8.1228 -4.5733 -1.7555 13 6 9.4050 -3.0321 -2.6214 14 6 10.4681 -3.9859 -3.2226 15 6 9.7030 -4.7652 -4.3121 16 1 9.8541 -4.2946 -5.2836 17 6 10.1836 -6.2172 -4.3532 18 7 11.5718 -6.2590 -4.8197 19 6 12.2184 -7.4603 -4.9374 20 1 11.7054 -8.3768 -4.6861 21 6 13.5335 -7.5001 -5.3799 22 7 14.1588 -6.3832 -5.6868 23 14 14.4161 -9.1387 -5.5399 24 1 15.7994 -8.9102 -6.0290 25 1 14.4631 -9.8070 -4.2146 26 1 13.6870 -10.0015 -6.5039 27 6 8.2140 -4.7135 -3.9274 28 6 2.2542 -1.0930 -0.0064 29 8 1.8806 -2.2524 -0.0128 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5134 -0.8902 32 1 -0.3633 -0.5142 0.8898 33 1 1.9251 2.1373 0.0006 34 1 4.5153 -2.4481 0.5100 35 1 5.5416 -0.9939 0.5111 36 1 5.3634 -0.8665 -1.9589 37 1 4.3371 -2.3207 -1.9599 38 1 6.5322 -2.7793 -3.4548 39 1 9.2718 -2.1549 -3.2545 40 1 9.6753 -2.7374 -1.6074 41 1 10.8444 -4.6671 -2.4594 42 1 11.2863 -3.4167 -3.6641 43 1 9.5539 -6.7892 -5.0345 44 1 10.1230 -6.6484 -3.3540 45 1 12.0327 -5.4359 -5.0451 46 1 13.7006 -5.5322 -5.6033 47 1 7.6427 -4.2170 -4.7116 48 1 7.8339 -5.7228 -3.7699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717876322.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:20 Heat of formation + Delta-G solvation = -17.061262 kcal Electronic energy + Delta-G solvation = -28126.467927 eV Core-core repulsion = 24024.255634 eV Total energy + Delta-G solvation = -4102.212293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.41286 -41.14626 -39.43708 -38.43378 -36.87876 -36.58035 -34.98377 -33.83346 -32.85993 -31.04846 -30.10499 -29.04126 -28.18177 -26.21492 -25.47496 -24.22844 -23.36539 -22.29810 -21.72716 -21.49969 -20.83713 -19.33551 -18.88814 -18.01991 -17.80250 -17.41378 -17.15317 -16.97574 -16.68908 -16.36370 -15.94481 -15.75281 -15.41480 -15.33715 -15.00513 -14.86840 -14.58240 -14.48005 -14.15306 -13.90466 -13.67356 -13.47449 -13.29310 -13.04778 -12.90181 -12.83537 -12.61926 -12.51685 -12.39948 -12.12193 -11.87580 -11.84142 -11.78635 -11.52378 -11.38682 -11.24052 -11.17183 -10.92690 -10.90794 -10.11104 -9.67601 -9.11575 -8.41889 -5.34873 0.71331 1.08492 1.52132 1.53735 1.57283 1.67472 1.84147 2.05038 2.33174 2.70406 3.37761 3.43176 3.48732 3.51495 3.61214 3.76894 3.87796 3.96241 3.98541 4.12291 4.29333 4.29909 4.34961 4.40479 4.43004 4.49381 4.53469 4.57385 4.64650 4.64981 4.68935 4.81549 4.83202 4.94588 4.95619 5.00633 5.05477 5.08751 5.16822 5.29438 5.42853 5.50861 5.57024 5.68940 6.47534 6.48660 6.62602 6.92475 7.09028 7.17136 7.99945 8.10761 9.10412 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.040353 B = 0.001523 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.718012 B =18383.191179 C =18639.251623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.558 5.558 3 C 0.280 3.720 4 N -0.316 5.316 5 N -0.457 5.457 6 C 0.177 3.823 7 C -0.142 4.142 8 C 0.521 3.479 9 O -0.581 6.581 10 N -0.706 5.706 11 C 0.145 3.855 12 H 0.073 0.927 13 C -0.120 4.120 14 C -0.111 4.111 15 C -0.088 4.088 16 H 0.075 0.925 17 C 0.162 3.838 18 N -0.755 5.755 19 C -0.339 4.339 20 H 0.063 0.937 21 C -0.103 4.103 22 N -0.973 5.973 23 Si 1.128 2.872 24 H -0.290 1.290 25 H -0.280 1.280 26 H -0.277 1.277 27 C -0.109 4.109 28 C 0.623 3.377 29 O -0.600 6.600 30 H 0.142 0.858 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.290 0.710 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.417 0.583 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.059 0.941 43 H 0.018 0.982 44 H 0.012 0.988 45 H 0.362 0.638 46 H 0.244 0.756 47 H 0.099 0.901 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.390 22.492 9.385 40.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.286 5.286 3 C -0.017 4.017 4 N -0.137 5.137 5 N -0.277 5.277 6 C 0.056 3.944 7 C -0.183 4.183 8 C 0.307 3.693 9 O -0.461 6.461 10 N -0.358 5.358 11 C 0.040 3.960 12 H 0.091 0.909 13 C -0.159 4.159 14 C -0.149 4.149 15 C -0.107 4.107 16 H 0.094 0.906 17 C 0.035 3.965 18 N -0.400 5.400 19 C -0.471 4.471 20 H 0.081 0.919 21 C -0.295 4.295 22 N -0.621 5.621 23 Si 0.953 3.047 24 H -0.216 1.216 25 H -0.206 1.206 26 H -0.203 1.203 27 C -0.147 4.147 28 C 0.322 3.678 29 O -0.478 6.478 30 H 0.161 0.839 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.305 0.695 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.123 0.877 38 H 0.255 0.745 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.030 0.970 45 H 0.194 0.806 46 H 0.054 0.946 47 H 0.117 0.883 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -30.034 20.735 9.769 37.781 hybrid contribution -1.784 0.442 0.072 1.840 sum -31.818 21.177 9.841 39.468 Atomic orbital electron populations 1.22163 0.71839 1.07236 1.03508 1.46197 1.10198 1.05982 1.66185 1.27194 0.84409 0.96075 0.94039 1.77064 1.20339 0.90381 1.25942 1.49016 1.05744 1.04203 1.68699 1.21035 0.83597 0.93096 0.96701 1.21905 0.95754 1.01697 0.98927 1.20707 0.84980 0.80023 0.83551 1.90733 1.64856 1.57761 1.32772 1.45923 1.29038 1.51810 1.09021 1.21685 0.84060 0.91687 0.98571 0.90858 1.22787 0.93970 0.98198 1.00897 1.22248 0.97672 0.97563 0.97404 1.21795 0.95157 0.94446 0.99311 0.90646 1.20910 0.84452 0.95434 0.95672 1.42554 1.11289 1.05074 1.81051 1.20420 0.98114 0.87365 1.41185 0.91865 1.27237 0.95328 1.07393 0.99492 1.70995 1.39400 0.97901 1.53823 0.82626 0.74875 0.70317 0.76908 1.21633 1.20573 1.20270 1.22294 0.95042 1.00924 0.96481 1.17170 0.82944 0.85531 0.82144 1.91058 1.78591 1.17423 1.60693 0.83935 0.90900 0.91131 0.69527 0.89947 0.87885 0.85762 0.87716 0.74478 0.89486 0.92183 0.93442 0.92215 0.96372 0.97000 0.80588 0.94569 0.88262 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.18 11.08 127.77 1.42 1.59 16 2 N -0.56 -5.42 3.14 -683.68 -2.15 -7.57 16 3 C 0.28 1.24 12.61 179.83 2.27 3.50 16 4 N -0.32 -4.15 12.53 -59.42 -0.74 -4.89 16 5 N -0.46 -8.45 3.63 -478.02 -1.73 -10.18 16 6 C 0.18 3.42 5.68 86.38 0.49 3.91 16 7 C -0.14 -2.19 6.02 29.85 0.18 -2.01 16 8 C 0.52 11.09 7.83 87.66 0.69 11.77 16 9 O -0.58 -17.62 15.63 -3.02 -0.05 -17.67 16 10 N -0.71 -12.65 5.16 -437.43 -2.26 -14.91 16 11 C 0.15 3.43 3.22 46.07 0.15 3.58 16 12 H 0.07 2.13 7.56 -2.39 -0.02 2.11 16 13 C -0.12 -3.00 6.58 31.91 0.21 -2.79 16 14 C -0.11 -3.48 6.05 31.69 0.19 -3.29 16 15 C -0.09 -2.73 2.97 -10.07 -0.03 -2.76 16 16 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 17 C 0.16 6.71 5.31 86.38 0.46 7.17 16 18 N -0.76 -39.57 5.44 -343.44 -1.87 -41.44 16 19 C -0.34 -19.91 9.99 84.03 0.84 -19.07 16 20 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 21 C -0.10 -6.17 5.50 84.86 0.47 -5.70 16 22 N -0.97 -62.12 13.70 21.65 0.30 -61.83 16 23 Si 1.13 53.23 29.92 68.60 2.05 55.28 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 26 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 27 C -0.11 -2.51 6.19 31.32 0.19 -2.32 16 28 C 0.62 12.85 8.61 178.99 1.54 14.39 16 29 O -0.60 -17.55 17.77 -4.70 -0.08 -17.63 16 30 H 0.14 -1.13 8.07 -2.39 -0.02 -1.15 16 31 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.29 -2.63 8.06 -2.91 -0.02 -2.66 16 34 H 0.08 1.92 8.07 -2.39 -0.02 1.90 16 35 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.42 4.62 8.37 -92.71 -0.78 3.84 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.72 7.77 -2.39 -0.02 1.71 16 42 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.01 0.52 8.02 -2.39 -0.02 0.50 16 45 H 0.36 19.41 6.36 -92.71 -0.59 18.82 16 46 H 0.24 15.48 6.77 -92.70 -0.63 14.86 16 47 H 0.10 1.70 7.73 -2.39 -0.02 1.68 16 48 H 0.07 1.75 7.67 -2.39 -0.02 1.73 16 Total: -1.00 -90.68 399.51 2.28 -88.39 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.24 Total: 24.48 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 9.06 Total: 7.97 kcal Atomic # 7 Polarization: -132.37 SS G_CDS: -8.45 Total: -140.82 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.13 Total: -35.30 kcal Atomic # 14 Polarization: 53.23 SS G_CDS: 2.05 Total: 55.28 kcal Total: -90.68 2.28 -88.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717876322.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.329 kcal (2) G-P(sol) polarization free energy of solvation -90.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds