Wall clock time and date at job start Tue Mar 31 2020 21:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00242 * 2 1 4 4 C 1.52998 * 109.47112 * 269.99763 * 3 2 1 5 5 O 1.42901 * 109.47153 * 65.00060 * 4 3 2 6 6 C 1.42902 * 114.00125 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46812 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47761 * 65.00093 * 7 6 5 9 9 C 1.36932 * 120.00303 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00198 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00128 * 179.97438 * 9 8 7 12 12 N 1.31614 * 120.00026 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00005 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47114 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46641 * 120.00377 * 13 11 9 16 16 H 1.48495 * 109.47180 * 239.99868 * 13 11 9 17 17 C 1.34781 * 119.99877 * 179.97438 * 2 1 3 18 18 O 1.21276 * 120.00034 * 185.54306 * 17 2 1 19 19 C 1.50703 * 119.99972 * 5.53900 * 17 2 1 20 20 H 1.08994 * 109.72211 * 326.39555 * 19 17 2 21 21 C 1.53429 * 109.69466 * 205.82384 * 19 17 2 22 22 C 1.53124 * 109.59048 * 190.58590 * 21 19 17 23 23 C 1.53427 * 109.56518 * 70.01188 * 22 21 19 24 24 C 1.50596 * 108.36871 * 310.24273 * 23 22 21 25 25 N 1.32909 * 129.16446 * 196.46787 * 24 23 22 26 26 N 1.29017 * 108.63660 * 179.87301 * 25 24 23 27 27 N 1.29117 * 110.25776 * 0.03504 * 26 25 24 28 28 H 0.96998 * 126.00435 * 180.02562 * 27 26 25 29 29 C 1.34394 * 107.98372 * 0.06223 * 27 26 25 30 30 H 1.09002 * 109.47776 * 273.67144 * 1 2 3 31 31 H 1.09002 * 109.47164 * 33.66912 * 1 2 3 32 32 H 1.09000 * 109.47634 * 153.66863 * 1 2 3 33 33 H 1.08998 * 109.47170 * 29.99558 * 3 2 1 34 34 H 1.08999 * 109.47451 * 149.99920 * 3 2 1 35 35 H 1.09007 * 109.47290 * 184.99654 * 4 3 2 36 36 H 1.08995 * 109.47609 * 305.00060 * 4 3 2 37 37 H 1.09001 * 109.46731 * 299.99458 * 6 5 4 38 38 H 1.08993 * 109.47333 * 59.99990 * 6 5 4 39 39 H 1.09009 * 109.46618 * 184.99867 * 7 6 5 40 40 H 1.09004 * 109.47326 * 304.99336 * 7 6 5 41 41 H 0.97003 * 119.99686 * 359.97438 * 8 7 6 42 42 H 0.96999 * 120.00794 * 179.97438 * 12 11 9 43 43 H 1.09001 * 109.46133 * 310.60360 * 21 19 17 44 44 H 1.09005 * 109.45835 * 70.55557 * 21 19 17 45 45 H 1.08997 * 109.42714 * 310.00319 * 22 21 19 46 46 H 1.08998 * 109.49324 * 190.06137 * 22 21 19 47 47 H 1.09003 * 109.69077 * 190.51403 * 23 22 21 48 48 H 1.08998 * 109.69015 * 69.97685 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 8 1.2061 1.9934 -2.0814 6 6 1.3325 2.4163 -3.4406 7 6 -0.0565 2.6907 -4.0205 8 7 -0.6645 3.8229 -3.3174 9 6 -1.9167 4.2532 -3.6664 10 1 -2.4560 3.7582 -4.4604 11 6 -2.4930 5.3258 -2.9998 12 7 -1.8360 5.9289 -2.0318 13 14 -4.2009 5.9132 -3.4765 14 1 -4.7217 5.0736 -4.5850 15 1 -5.1070 5.8033 -2.3050 16 1 -4.1321 7.3294 -3.9178 17 6 2.1388 -1.1673 0.0005 18 8 3.3473 -1.1697 0.1020 19 6 1.3906 -2.4694 -0.1249 20 1 0.4222 -2.3860 0.3683 21 6 2.2047 -3.5979 0.5215 22 6 1.5796 -4.9500 0.1668 23 6 1.8019 -5.2439 -1.3226 24 6 1.3771 -4.0348 -2.1135 25 7 1.1129 -3.9314 -3.4120 26 7 0.7816 -2.7114 -3.6695 27 7 0.8167 -2.0016 -2.5915 28 1 0.6092 -1.0565 -2.5242 29 6 1.1921 -2.8023 -1.5795 30 1 -0.3635 0.0658 1.0255 31 1 -0.3633 0.8553 -0.5697 32 1 -0.3634 -0.9210 -0.4558 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1383 0.5138 35 1 3.0733 2.6063 -1.4438 36 1 2.9642 0.9130 -1.9815 37 1 1.9301 3.3268 -3.4837 38 1 1.8207 1.6334 -4.0208 39 1 0.0328 2.9270 -5.0809 40 1 -0.6830 1.8072 -3.8967 41 1 -0.1802 4.2674 -2.6040 42 1 -2.2384 6.6786 -1.5662 43 1 3.2295 -3.5640 0.1518 44 1 2.2051 -3.4712 1.6041 45 1 0.5102 -4.9209 0.3754 46 1 2.0446 -5.7337 0.7648 47 1 1.2045 -6.1057 -1.6200 48 1 2.8571 -5.4487 -1.5030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718010618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:06 Heat of formation + Delta-G solvation = 22.277646 kcal Electronic energy + Delta-G solvation = -30448.637087 eV Core-core repulsion = 26348.130657 eV Total energy + Delta-G solvation = -4100.506430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.74145 -40.43556 -38.06431 -37.09273 -35.84260 -34.53110 -34.08451 -31.74424 -31.09586 -30.43048 -29.81656 -27.76451 -26.74568 -25.13843 -23.63414 -23.56929 -23.14881 -22.43108 -21.24739 -20.12622 -19.58915 -18.33257 -17.66742 -17.23554 -16.68437 -16.52775 -16.16255 -15.90077 -15.51326 -15.10888 -14.63518 -14.39949 -14.28601 -14.10262 -13.89300 -13.83971 -13.20971 -13.13334 -13.04758 -12.84412 -12.73495 -12.38883 -11.96335 -11.85611 -11.80590 -11.68477 -11.60149 -11.54257 -11.33603 -10.99667 -10.97643 -10.85957 -10.59920 -10.59563 -10.15783 -10.04306 -9.77622 -9.42667 -9.12972 -8.97442 -8.91412 -6.95005 -5.79218 -3.07668 1.26027 2.13049 2.30387 2.48880 2.65357 3.40445 3.46711 3.48604 3.80400 3.86646 4.08242 4.15617 4.31234 4.52282 4.56625 4.68626 4.82545 4.88632 4.94158 4.96575 5.04498 5.07043 5.24563 5.29235 5.31766 5.40587 5.44423 5.48856 5.53020 5.54545 5.57970 5.62394 5.66861 5.70005 5.75366 5.84433 5.91223 5.95620 6.19421 6.25652 6.52290 6.57177 6.63271 7.00921 7.39495 7.67135 7.76309 8.23404 8.39183 9.51229 10.08427 10.44497 11.43467 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.002858 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.384882 B = 9795.479023 C =10424.617155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.607 5.607 3 C 0.117 3.883 4 C 0.042 3.958 5 O -0.374 6.374 6 C 0.056 3.944 7 C 0.155 3.845 8 N -0.727 5.727 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.013 4.013 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.513 3.487 18 O -0.528 6.528 19 C -0.032 4.032 20 H 0.114 0.886 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.035 4.035 24 C -0.005 4.005 25 N -0.260 5.260 26 N -0.075 5.075 27 N -0.374 5.374 28 H 0.452 0.548 29 C -0.010 4.010 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.042 0.958 39 H 0.033 0.967 40 H 0.024 0.976 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.262 -20.331 8.479 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.340 5.340 3 C -0.005 4.005 4 C -0.036 4.036 5 O -0.293 6.293 6 C -0.021 4.021 7 C 0.027 3.973 8 N -0.372 5.372 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.209 4.209 12 N -0.580 5.580 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 C 0.299 3.701 18 O -0.404 6.404 19 C -0.056 4.056 20 H 0.132 0.868 21 C -0.140 4.140 22 C -0.156 4.156 23 C -0.074 4.074 24 C -0.146 4.146 25 N -0.126 5.126 26 N -0.054 5.054 27 N -0.095 5.095 28 H 0.299 0.701 29 C -0.146 4.146 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.042 0.958 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.300 -20.445 6.951 23.511 hybrid contribution -0.664 1.513 0.864 1.865 sum 8.636 -18.932 7.815 22.227 Atomic orbital electron populations 1.22096 0.78511 1.04136 1.03122 1.47892 1.07615 1.05746 1.72762 1.21619 0.98569 0.84554 0.95765 1.22896 0.87675 0.99324 0.93693 1.87974 1.27809 1.87565 1.25960 1.22840 0.99515 0.97734 0.81984 1.20686 0.89953 0.91920 0.94701 1.42282 1.17778 1.34814 1.42277 1.19272 0.92558 1.10834 1.14365 0.91214 1.24728 0.98636 0.98872 0.98703 1.69673 1.37722 1.24892 1.25751 0.86136 0.84262 0.78373 0.77544 1.20558 1.21877 1.21881 1.20449 0.88014 0.84982 0.76664 1.90702 1.13861 1.87037 1.48760 1.20015 1.01682 0.94543 0.89362 0.86801 1.21539 1.00144 0.91659 1.00674 1.21663 1.01777 0.96983 0.95210 1.20012 1.02181 0.92834 0.92384 1.21702 1.06001 0.95653 0.91220 1.74867 1.14428 1.09325 1.13946 1.78650 1.19785 0.98316 1.08691 1.44934 1.44914 1.13662 1.05941 0.70104 1.21285 1.08775 0.92234 0.92335 0.91616 0.88083 0.91999 0.88669 0.88308 0.92075 0.93895 0.93082 0.93986 0.94916 0.95835 0.77927 0.93620 0.89514 0.90048 0.91134 0.89911 0.89447 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 9.57 59.84 0.57 1.16 16 2 N -0.61 -6.30 2.84 -181.58 -0.52 -6.81 16 3 C 0.12 1.29 5.87 -4.05 -0.02 1.26 16 4 C 0.04 0.52 6.28 37.16 0.23 0.76 16 5 O -0.37 -5.68 9.06 -35.23 -0.32 -6.00 16 6 C 0.06 0.88 6.07 37.16 0.23 1.11 16 7 C 0.16 3.04 6.64 -4.04 -0.03 3.01 16 8 N -0.73 -18.08 5.55 -59.91 -0.33 -18.41 16 9 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 10 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 13 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 C 0.51 5.67 6.73 -10.98 -0.07 5.59 16 18 O -0.53 -7.42 15.46 5.56 0.09 -7.34 16 19 C -0.03 -0.28 2.05 -92.78 -0.19 -0.47 16 20 H 0.11 0.75 6.53 -51.93 -0.34 0.41 16 21 C -0.10 -0.74 4.96 -26.44 -0.13 -0.87 16 22 C -0.12 -0.66 5.90 -26.45 -0.16 -0.81 16 23 C -0.04 -0.26 6.30 -27.71 -0.17 -0.44 16 24 C -0.01 -0.06 7.11 -83.12 -0.59 -0.65 16 25 N -0.26 -3.71 12.40 33.16 0.41 -3.30 16 26 N -0.08 -1.10 13.40 60.35 0.81 -0.29 16 27 N -0.37 -4.56 6.72 33.39 0.22 -4.33 16 28 H 0.45 5.16 8.28 -190.07 -1.57 3.59 16 29 C -0.01 -0.11 6.08 -82.50 -0.50 -0.61 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.10 1.18 7.06 -51.93 -0.37 0.82 16 32 H 0.06 0.49 5.34 -51.93 -0.28 0.21 16 33 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 34 H 0.10 1.05 7.35 -51.93 -0.38 0.67 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.39 10.20 7.67 -40.82 -0.31 9.88 16 42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.09 0.78 7.46 -51.93 -0.39 0.39 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 389.99 15.07 5.88 5.88 Total: -1.00 -34.11 389.99 -7.82 -41.93 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.68 Total: 6.77 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.08 Total: 1.81 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 1.32 Total: -60.18 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.23 Total: -13.34 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.11 -7.82 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718010618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.204 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds