Wall clock time and date at job start Tue Mar 31 2020 21:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00242 * 2 1 4 4 C 1.52998 * 109.47112 * 269.99763 * 3 2 1 5 5 O 1.42901 * 109.47153 * 65.00060 * 4 3 2 6 6 C 1.42902 * 114.00125 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46812 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47761 * 65.00093 * 7 6 5 9 9 C 1.36932 * 120.00303 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00198 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00128 * 179.97438 * 9 8 7 12 12 N 1.31614 * 120.00026 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00005 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47114 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46641 * 120.00377 * 13 11 9 16 16 H 1.48495 * 109.47180 * 239.99868 * 13 11 9 17 17 C 1.34781 * 119.99877 * 179.97438 * 2 1 3 18 18 O 1.21276 * 120.00034 * 185.54306 * 17 2 1 19 19 C 1.50703 * 119.99972 * 5.53900 * 17 2 1 20 20 H 1.08994 * 109.72211 * 326.39555 * 19 17 2 21 21 C 1.53429 * 109.69466 * 205.82384 * 19 17 2 22 22 C 1.53124 * 109.59048 * 190.58590 * 21 19 17 23 23 C 1.53427 * 109.56518 * 70.01188 * 22 21 19 24 24 C 1.50596 * 108.36871 * 310.24273 * 23 22 21 25 25 N 1.32909 * 129.16446 * 196.46787 * 24 23 22 26 26 N 1.29017 * 108.63660 * 179.87301 * 25 24 23 27 27 N 1.29117 * 110.25776 * 0.03504 * 26 25 24 28 28 H 0.96998 * 126.00435 * 180.02562 * 27 26 25 29 29 C 1.34394 * 107.98372 * 0.06223 * 27 26 25 30 30 H 1.09002 * 109.47776 * 273.67144 * 1 2 3 31 31 H 1.09002 * 109.47164 * 33.66912 * 1 2 3 32 32 H 1.09000 * 109.47634 * 153.66863 * 1 2 3 33 33 H 1.08998 * 109.47170 * 29.99558 * 3 2 1 34 34 H 1.08999 * 109.47451 * 149.99920 * 3 2 1 35 35 H 1.09007 * 109.47290 * 184.99654 * 4 3 2 36 36 H 1.08995 * 109.47609 * 305.00060 * 4 3 2 37 37 H 1.09001 * 109.46731 * 299.99458 * 6 5 4 38 38 H 1.08993 * 109.47333 * 59.99990 * 6 5 4 39 39 H 1.09009 * 109.46618 * 184.99867 * 7 6 5 40 40 H 1.09004 * 109.47326 * 304.99336 * 7 6 5 41 41 H 0.97003 * 119.99686 * 359.97438 * 8 7 6 42 42 H 0.96999 * 120.00794 * 179.97438 * 12 11 9 43 43 H 1.09001 * 109.46133 * 310.60360 * 21 19 17 44 44 H 1.09005 * 109.45835 * 70.55557 * 21 19 17 45 45 H 1.08997 * 109.42714 * 310.00319 * 22 21 19 46 46 H 1.08998 * 109.49324 * 190.06137 * 22 21 19 47 47 H 1.09003 * 109.69077 * 190.51403 * 23 22 21 48 48 H 1.08998 * 109.69015 * 69.97685 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 8 1.2061 1.9934 -2.0814 6 6 1.3325 2.4163 -3.4406 7 6 -0.0565 2.6907 -4.0205 8 7 -0.6645 3.8229 -3.3174 9 6 -1.9167 4.2532 -3.6664 10 1 -2.4560 3.7582 -4.4604 11 6 -2.4930 5.3258 -2.9998 12 7 -1.8360 5.9289 -2.0318 13 14 -4.2009 5.9132 -3.4765 14 1 -4.7217 5.0736 -4.5850 15 1 -5.1070 5.8033 -2.3050 16 1 -4.1321 7.3294 -3.9178 17 6 2.1388 -1.1673 0.0005 18 8 3.3473 -1.1697 0.1020 19 6 1.3906 -2.4694 -0.1249 20 1 0.4222 -2.3860 0.3683 21 6 2.2047 -3.5979 0.5215 22 6 1.5796 -4.9500 0.1668 23 6 1.8019 -5.2439 -1.3226 24 6 1.3771 -4.0348 -2.1135 25 7 1.1129 -3.9314 -3.4120 26 7 0.7816 -2.7114 -3.6695 27 7 0.8167 -2.0016 -2.5915 28 1 0.6092 -1.0565 -2.5242 29 6 1.1921 -2.8023 -1.5795 30 1 -0.3635 0.0658 1.0255 31 1 -0.3633 0.8553 -0.5697 32 1 -0.3634 -0.9210 -0.4558 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1383 0.5138 35 1 3.0733 2.6063 -1.4438 36 1 2.9642 0.9130 -1.9815 37 1 1.9301 3.3268 -3.4837 38 1 1.8207 1.6334 -4.0208 39 1 0.0328 2.9270 -5.0809 40 1 -0.6830 1.8072 -3.8967 41 1 -0.1802 4.2674 -2.6040 42 1 -2.2384 6.6786 -1.5662 43 1 3.2295 -3.5640 0.1518 44 1 2.2051 -3.4712 1.6041 45 1 0.5102 -4.9209 0.3754 46 1 2.0446 -5.7337 0.7648 47 1 1.2045 -6.1057 -1.6200 48 1 2.8571 -5.4487 -1.5030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718010618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:05 Heat of formation + Delta-G solvation = -2.314348 kcal Electronic energy + Delta-G solvation = -30449.703476 eV Core-core repulsion = 26348.130657 eV Total energy + Delta-G solvation = -4101.572819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.65626 -41.31470 -39.21405 -37.82685 -36.88694 -36.21769 -35.03336 -33.46583 -32.09547 -31.22953 -30.82527 -29.32179 -27.60042 -25.93661 -25.51502 -24.55919 -23.88210 -23.32815 -22.84045 -20.89660 -20.38289 -19.26346 -19.19561 -18.51787 -17.67492 -17.57275 -17.19003 -16.89747 -16.76188 -16.23585 -15.99253 -15.48361 -15.27110 -15.00245 -14.87459 -14.73594 -14.60513 -14.47326 -14.22332 -13.88900 -13.62104 -13.26819 -13.21532 -12.96885 -12.82800 -12.77141 -12.70337 -12.57989 -12.46364 -12.24482 -12.13393 -11.99220 -11.94457 -11.73955 -11.68601 -11.38589 -11.03229 -10.98939 -10.61436 -9.99582 -9.83619 -8.99287 -7.94258 -5.22534 0.35193 1.24039 1.40346 1.47573 1.48046 1.58020 1.61074 1.82462 2.55858 2.66440 3.07717 3.30246 3.39843 3.45763 3.64327 3.88650 3.90087 3.96289 3.99840 4.10144 4.16715 4.23916 4.25206 4.29915 4.39187 4.40527 4.43439 4.47642 4.57857 4.59571 4.60219 4.74738 4.89785 4.96471 4.97673 4.99304 5.08180 5.10077 5.17429 5.30684 5.31755 5.45607 5.49260 5.66689 6.12302 6.24843 6.28441 6.90211 7.28026 7.34759 8.09392 8.34412 9.29132 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.002858 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.384882 B = 9795.479023 C =10424.617155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.605 5.605 3 C 0.119 3.881 4 C 0.044 3.956 5 O -0.386 6.386 6 C 0.066 3.934 7 C 0.152 3.848 8 N -0.738 5.738 9 C -0.244 4.244 10 H 0.073 0.927 11 C -0.072 4.072 12 N -0.966 5.966 13 Si 0.970 3.030 14 H -0.268 1.268 15 H -0.292 1.292 16 H -0.294 1.294 17 C 0.512 3.488 18 O -0.560 6.560 19 C -0.029 4.029 20 H 0.142 0.858 21 C -0.100 4.100 22 C -0.109 4.109 23 C -0.038 4.038 24 C -0.012 4.012 25 N -0.288 5.288 26 N -0.112 5.112 27 N -0.372 5.372 28 H 0.453 0.547 29 C -0.006 4.006 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.038 0.962 40 H 0.025 0.975 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.811 -21.881 9.551 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.337 5.337 3 C -0.004 4.004 4 C -0.034 4.034 5 O -0.306 6.306 6 C -0.011 4.011 7 C 0.026 3.974 8 N -0.381 5.381 9 C -0.376 4.376 10 H 0.091 0.909 11 C -0.265 4.265 12 N -0.617 5.617 13 Si 0.800 3.200 14 H -0.193 1.193 15 H -0.219 1.219 16 H -0.222 1.222 17 C 0.300 3.700 18 O -0.439 6.439 19 C -0.052 4.052 20 H 0.160 0.840 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.077 4.077 24 C -0.153 4.153 25 N -0.153 5.153 26 N -0.090 5.090 27 N -0.093 5.093 28 H 0.300 0.700 29 C -0.143 4.143 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.209 0.791 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.127 0.873 47 H 0.117 0.883 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.838 -22.027 7.979 25.039 hybrid contribution -0.455 1.952 0.530 2.073 sum 8.384 -20.075 8.510 23.361 Atomic orbital electron populations 1.22119 0.77670 1.03709 1.04092 1.47943 1.08082 1.05489 1.72145 1.21583 0.99029 0.85002 0.94769 1.22986 0.86674 0.99510 0.94188 1.87956 1.29396 1.87589 1.25646 1.22642 0.97125 0.98552 0.82777 1.20834 0.91792 0.90119 0.94690 1.42443 1.17214 1.36054 1.42373 1.19639 0.93552 1.10502 1.13858 0.90873 1.25507 1.02328 0.99496 0.99162 1.69817 1.39301 1.25479 1.27077 0.85121 0.79988 0.77563 0.77367 1.19258 1.21905 1.22165 1.20825 0.87691 0.85669 0.75837 1.90690 1.15326 1.87512 1.50334 1.20203 1.03016 0.93766 0.88191 0.84042 1.21588 0.98832 0.91935 1.01527 1.21667 1.02621 0.96608 0.93793 1.20241 1.02507 0.91645 0.93287 1.22393 1.05150 0.97235 0.90494 1.74821 1.15304 1.09441 1.15703 1.78605 1.21751 0.98867 1.09811 1.44946 1.44624 1.13694 1.05992 0.70015 1.21690 1.07635 0.91936 0.92992 0.89598 0.90616 0.90602 0.88483 0.87823 0.91416 0.94244 0.93353 0.91479 0.94406 0.95660 0.79126 0.94056 0.91484 0.88188 0.89987 0.87319 0.88348 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 9.57 127.77 1.22 2.35 16 2 N -0.60 -11.80 2.84 -846.78 -2.40 -14.21 16 3 C 0.12 2.52 5.87 86.38 0.51 3.03 16 4 C 0.04 1.07 6.28 71.98 0.45 1.52 16 5 O -0.39 -11.59 9.06 -148.98 -1.35 -12.94 16 6 C 0.07 2.03 6.07 71.98 0.44 2.47 16 7 C 0.15 5.90 6.64 86.38 0.57 6.47 16 8 N -0.74 -36.81 5.55 -343.45 -1.91 -38.71 16 9 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 10 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 11 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 12 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16 13 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 16 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 17 C 0.51 10.61 6.73 87.66 0.59 11.20 16 18 O -0.56 -15.30 15.46 -3.02 -0.05 -15.34 16 19 C -0.03 -0.43 2.05 -12.19 -0.02 -0.46 16 20 H 0.14 1.38 6.53 -2.39 -0.02 1.37 16 21 C -0.10 -1.19 4.96 30.78 0.15 -1.04 16 22 C -0.11 -0.85 5.90 30.78 0.18 -0.67 16 23 C -0.04 -0.49 6.30 29.96 0.19 -0.30 16 24 C -0.01 -0.25 7.11 41.75 0.30 0.04 16 25 N -0.29 -8.21 12.40 -48.99 -0.61 -8.81 16 26 N -0.11 -3.29 13.40 37.02 0.50 -2.79 16 27 N -0.37 -8.92 6.72 -48.27 -0.32 -9.25 16 28 H 0.45 10.21 8.28 -219.68 -1.82 8.39 16 29 C -0.01 -0.12 6.08 41.50 0.25 0.14 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.74 7.06 -2.39 -0.02 1.72 16 32 H 0.08 1.05 5.34 -2.39 -0.01 1.04 16 33 H 0.10 2.03 8.07 -2.39 -0.02 2.01 16 34 H 0.10 2.13 7.35 -2.39 -0.02 2.11 16 35 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 41 H 0.38 20.11 7.67 -92.71 -0.71 19.40 16 42 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.07 1.10 7.46 -2.39 -0.02 1.08 16 44 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.08 0.50 8.12 -2.39 -0.02 0.48 16 46 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -73.96 389.99 0.77 -73.19 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -1.53 Total: 30.61 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 6.14 Total: 8.52 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -4.46 Total: -131.63 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.40 Total: -28.28 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.96 0.77 -73.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718010618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.871 kcal (2) G-P(sol) polarization free energy of solvation -73.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds