Wall clock time and date at job start Tue Mar 31 2020 21:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00101 * 2 1 4 4 C 1.52999 * 109.47457 * 270.00290 * 3 2 1 5 5 O 1.42896 * 109.46972 * 65.00170 * 4 3 2 6 6 C 1.42901 * 114.00030 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47401 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46705 * 65.00006 * 7 6 5 9 9 C 1.36933 * 119.99826 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00247 * 0.02562 * 9 8 7 11 11 C 1.38816 * 120.00307 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99256 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00343 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47073 * 60.00214 * 13 11 9 15 15 H 1.48504 * 109.47293 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47189 * 300.00182 * 13 11 9 17 17 C 1.34773 * 120.00008 * 180.02562 * 2 1 3 18 18 O 1.21276 * 120.00237 * 184.64326 * 17 2 1 19 19 C 1.50710 * 120.00087 * 4.63867 * 17 2 1 20 20 H 1.08999 * 109.68881 * 332.61186 * 19 17 2 21 21 C 1.53431 * 109.69015 * 93.15544 * 19 17 2 22 22 C 1.53110 * 109.55243 * 169.43410 * 21 19 17 23 23 C 1.53426 * 109.57426 * 289.93537 * 22 21 19 24 24 C 1.50593 * 108.33673 * 49.81666 * 23 22 21 25 25 N 1.32906 * 129.16515 * 163.39567 * 24 23 22 26 26 N 1.29016 * 108.64127 * 180.18096 * 25 24 23 27 27 N 1.29117 * 110.25450 * 359.97438 * 26 25 24 28 28 H 0.96999 * 126.00431 * 179.97438 * 27 26 25 29 29 C 1.34398 * 107.98501 * 359.93332 * 27 26 25 30 30 H 1.08998 * 109.46897 * 264.61992 * 1 2 3 31 31 H 1.08995 * 109.46906 * 24.62207 * 1 2 3 32 32 H 1.08998 * 109.46747 * 144.62070 * 1 2 3 33 33 H 1.09004 * 109.46656 * 30.00746 * 3 2 1 34 34 H 1.09005 * 109.46742 * 149.99880 * 3 2 1 35 35 H 1.09000 * 109.47044 * 185.00126 * 4 3 2 36 36 H 1.08999 * 109.46813 * 305.00191 * 4 3 2 37 37 H 1.09002 * 109.46885 * 300.00190 * 6 5 4 38 38 H 1.09005 * 109.47075 * 59.99521 * 6 5 4 39 39 H 1.08997 * 109.47402 * 185.00139 * 7 6 5 40 40 H 1.09002 * 109.47299 * 305.00186 * 7 6 5 41 41 H 0.96996 * 120.00087 * 359.97438 * 8 7 6 42 42 H 0.97004 * 119.99623 * 180.02562 * 12 11 9 43 43 H 1.08997 * 109.45763 * 49.40722 * 21 19 17 44 44 H 1.08998 * 109.44649 * 289.44682 * 21 19 17 45 45 H 1.08999 * 109.45620 * 169.90318 * 22 21 19 46 46 H 1.08997 * 109.43563 * 49.95782 * 22 21 19 47 47 H 1.08996 * 109.69320 * 290.09991 * 23 22 21 48 48 H 1.09004 * 109.71862 * 169.54678 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7105 -1.4425 5 8 1.2061 1.9937 -2.0812 6 6 1.3324 2.4167 -3.4404 7 6 -0.0566 2.6899 -4.0207 8 7 -0.6656 3.8217 -3.3175 9 6 -1.9176 4.2518 -3.6675 10 1 -2.4564 3.7563 -4.4617 11 6 -2.4949 5.3239 -3.0010 12 7 -1.8385 5.9273 -2.0328 13 14 -4.2032 5.9100 -3.4780 14 1 -5.1765 4.8044 -3.2896 15 1 -4.5887 7.0607 -2.6220 16 1 -4.2023 6.3314 -4.9020 17 6 2.1389 -1.1672 -0.0005 18 8 3.3487 -1.1690 0.0845 19 6 1.3891 -2.4702 -0.1067 20 1 0.3855 -2.3506 0.3014 21 6 1.3017 -2.8980 -1.5775 22 6 0.7793 -4.3347 -1.6631 23 6 1.8488 -5.3025 -1.1401 24 6 2.3300 -4.8001 0.1955 25 7 3.0100 -5.4434 1.1389 26 7 3.2120 -4.6361 2.1248 27 7 2.6924 -3.4817 1.8708 28 1 2.7102 -2.7075 2.4549 29 6 2.1235 -3.5411 0.6547 30 1 -0.3633 -0.0964 1.0231 31 1 -0.3633 0.9342 -0.4281 32 1 -0.3633 -0.8379 -0.5950 33 1 1.6085 2.0283 0.5140 34 1 3.1500 1.1383 0.5139 35 1 3.0733 2.6064 -1.4437 36 1 2.9642 0.9132 -1.9815 37 1 1.9301 3.3272 -3.4834 38 1 1.8207 1.6337 -4.0207 39 1 0.0326 2.9263 -5.0810 40 1 -0.6824 1.8060 -3.8970 41 1 -0.1819 4.2665 -2.6040 42 1 -2.2420 6.6762 -1.5667 43 1 2.2914 -2.8439 -2.0308 44 1 0.6219 -2.2323 -2.1093 45 1 0.5478 -4.5756 -2.7006 46 1 -0.1227 -4.4292 -1.0586 47 1 2.6831 -5.3412 -1.8404 48 1 1.4194 -6.2978 -1.0252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718010619.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:10 Heat of formation + Delta-G solvation = 21.588175 kcal Electronic energy + Delta-G solvation = -29805.081633 eV Core-core repulsion = 25704.545305 eV Total energy + Delta-G solvation = -4100.536328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.73974 -40.41590 -37.95193 -37.13171 -35.81131 -34.45483 -34.08996 -31.75777 -31.10705 -30.50235 -29.70206 -27.70957 -26.67605 -25.10424 -23.66193 -23.54390 -23.03405 -22.64560 -21.20311 -20.12535 -19.62007 -18.22516 -17.77128 -17.21153 -16.63689 -16.39725 -16.07745 -15.93883 -15.34357 -15.11450 -14.62151 -14.49754 -14.24730 -14.08405 -13.83909 -13.83267 -13.20138 -13.14391 -13.00989 -12.74744 -12.69351 -12.40502 -11.96068 -11.89552 -11.75003 -11.73705 -11.66183 -11.45908 -11.41902 -10.96826 -10.93093 -10.82397 -10.61210 -10.57449 -10.09870 -10.05342 -9.74608 -9.33318 -9.16581 -8.92725 -8.87381 -6.93313 -5.77823 -3.06084 1.26882 2.15974 2.24894 2.44196 2.72348 3.41507 3.46117 3.47061 3.80766 3.90280 4.10442 4.14905 4.35368 4.49810 4.57485 4.68222 4.79628 4.92412 4.99714 5.02785 5.05469 5.13986 5.24079 5.34647 5.36075 5.42939 5.46166 5.49663 5.51764 5.56081 5.63130 5.63696 5.67550 5.73309 5.81972 5.86226 5.91273 5.94098 6.25609 6.29313 6.53840 6.55270 6.68293 7.07265 7.48973 7.66641 7.78689 8.19781 8.40837 9.52402 10.10586 10.46470 11.44868 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.002336 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.089559 B =11984.066281 C =12314.426487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.598 5.598 3 C 0.117 3.883 4 C 0.045 3.955 5 O -0.370 6.370 6 C 0.059 3.941 7 C 0.155 3.845 8 N -0.727 5.727 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.933 5.933 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.512 3.488 18 O -0.539 6.539 19 C -0.035 4.035 20 H 0.114 0.886 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.035 4.035 24 C -0.011 4.011 25 N -0.260 5.260 26 N -0.087 5.087 27 N -0.371 5.371 28 H 0.447 0.553 29 C 0.010 3.990 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.031 0.969 40 H 0.025 0.975 41 H 0.387 0.613 42 H 0.255 0.745 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.141 -18.853 4.151 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.330 5.330 3 C -0.006 4.006 4 C -0.033 4.033 5 O -0.289 6.289 6 C -0.018 4.018 7 C 0.028 3.972 8 N -0.372 5.372 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.581 5.581 13 Si 0.738 3.262 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.298 3.702 18 O -0.416 6.416 19 C -0.058 4.058 20 H 0.132 0.868 21 C -0.144 4.144 22 C -0.155 4.155 23 C -0.074 4.074 24 C -0.151 4.151 25 N -0.126 5.126 26 N -0.066 5.066 27 N -0.089 5.089 28 H 0.293 0.707 29 C -0.127 4.127 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.253 -19.812 5.203 22.084 hybrid contribution -1.096 1.924 -0.410 2.252 sum 7.157 -17.888 4.793 19.854 Atomic orbital electron populations 1.22031 0.78144 1.05536 1.01463 1.47803 1.07847 1.05435 1.71868 1.21624 0.98338 0.84612 0.95990 1.22833 0.87693 0.99137 0.93633 1.87988 1.27656 1.87512 1.25787 1.22786 0.99323 0.97469 0.82216 1.20681 0.90135 0.91892 0.94524 1.42276 1.17748 1.34886 1.42267 1.19182 0.92650 1.10868 1.14371 0.91327 1.24730 0.98615 0.98905 0.98719 1.69661 1.37841 1.24949 1.25679 0.86279 0.84361 0.78024 0.77573 1.21292 1.21719 1.21314 1.20429 0.87880 0.85100 0.76755 1.90733 1.13825 1.87316 1.49758 1.20034 0.98938 0.89086 0.97765 0.86778 1.21576 1.03696 0.97625 0.91480 1.21648 0.98194 0.93138 1.02517 1.20012 0.98663 0.99393 0.89364 1.21666 1.03189 0.91181 0.99092 1.74812 1.14461 1.24620 0.98658 1.78562 1.18144 0.89002 1.20866 1.44622 1.36807 1.13239 1.14214 0.70743 1.21199 1.04607 0.98217 0.88649 0.92617 0.88162 0.91137 0.88850 0.88639 0.92471 0.93633 0.93394 0.93990 0.95101 0.95678 0.77955 0.93532 0.90300 0.89357 0.89695 0.90916 0.89667 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 9.57 59.85 0.57 1.21 16 2 N -0.60 -6.16 2.84 -181.57 -0.52 -6.68 16 3 C 0.12 1.29 5.82 -4.04 -0.02 1.27 16 4 C 0.05 0.57 6.28 37.16 0.23 0.80 16 5 O -0.37 -5.78 9.21 -35.23 -0.32 -6.10 16 6 C 0.06 0.93 6.07 37.16 0.23 1.15 16 7 C 0.16 3.01 6.65 -4.04 -0.03 2.98 16 8 N -0.73 -18.02 5.55 -59.91 -0.33 -18.35 16 9 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 10 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 13 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.51 5.50 6.66 -10.98 -0.07 5.43 16 18 O -0.54 -7.57 15.89 5.56 0.09 -7.48 16 19 C -0.03 -0.29 2.09 -92.78 -0.19 -0.48 16 20 H 0.11 0.72 6.40 -51.93 -0.33 0.38 16 21 C -0.11 -0.77 5.16 -26.45 -0.14 -0.91 16 22 C -0.12 -0.67 5.90 -26.45 -0.16 -0.83 16 23 C -0.04 -0.26 6.30 -27.71 -0.17 -0.44 16 24 C -0.01 -0.12 7.11 -83.13 -0.59 -0.71 16 25 N -0.26 -3.49 12.40 33.16 0.41 -3.08 16 26 N -0.09 -1.13 13.40 60.35 0.81 -0.32 16 27 N -0.37 -3.89 6.84 33.39 0.23 -3.67 16 28 H 0.45 3.56 8.96 -190.07 -1.70 1.86 16 29 C 0.01 0.10 5.95 -82.50 -0.49 -0.39 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 1.20 7.23 -51.93 -0.38 0.82 16 32 H 0.07 0.51 6.15 -51.93 -0.32 0.19 16 33 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.10 1.02 7.36 -51.93 -0.38 0.64 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.39 10.20 7.67 -40.82 -0.31 9.88 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 44 H 0.09 0.58 7.74 -51.93 -0.40 0.18 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -34.92 392.46 -7.96 -42.88 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.86 Total: 5.06 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.08 Total: 1.90 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 1.33 Total: -59.07 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.24 Total: -13.58 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.92 -7.96 -42.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718010619.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.471 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds