Wall clock time and date at job start Tue Mar 31 2020 21:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00101 * 2 1 4 4 C 1.52999 * 109.47457 * 270.00290 * 3 2 1 5 5 O 1.42896 * 109.46972 * 65.00170 * 4 3 2 6 6 C 1.42901 * 114.00030 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47401 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46705 * 65.00006 * 7 6 5 9 9 C 1.36933 * 119.99826 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00247 * 0.02562 * 9 8 7 11 11 C 1.38816 * 120.00307 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99256 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00343 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47073 * 60.00214 * 13 11 9 15 15 H 1.48504 * 109.47293 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47189 * 300.00182 * 13 11 9 17 17 C 1.34773 * 120.00008 * 180.02562 * 2 1 3 18 18 O 1.21276 * 120.00237 * 184.64326 * 17 2 1 19 19 C 1.50710 * 120.00087 * 4.63867 * 17 2 1 20 20 H 1.08999 * 109.68881 * 332.61186 * 19 17 2 21 21 C 1.53431 * 109.69015 * 93.15544 * 19 17 2 22 22 C 1.53110 * 109.55243 * 169.43410 * 21 19 17 23 23 C 1.53426 * 109.57426 * 289.93537 * 22 21 19 24 24 C 1.50593 * 108.33673 * 49.81666 * 23 22 21 25 25 N 1.32906 * 129.16515 * 163.39567 * 24 23 22 26 26 N 1.29016 * 108.64127 * 180.18096 * 25 24 23 27 27 N 1.29117 * 110.25450 * 359.97438 * 26 25 24 28 28 H 0.96999 * 126.00431 * 179.97438 * 27 26 25 29 29 C 1.34398 * 107.98501 * 359.93332 * 27 26 25 30 30 H 1.08998 * 109.46897 * 264.61992 * 1 2 3 31 31 H 1.08995 * 109.46906 * 24.62207 * 1 2 3 32 32 H 1.08998 * 109.46747 * 144.62070 * 1 2 3 33 33 H 1.09004 * 109.46656 * 30.00746 * 3 2 1 34 34 H 1.09005 * 109.46742 * 149.99880 * 3 2 1 35 35 H 1.09000 * 109.47044 * 185.00126 * 4 3 2 36 36 H 1.08999 * 109.46813 * 305.00191 * 4 3 2 37 37 H 1.09002 * 109.46885 * 300.00190 * 6 5 4 38 38 H 1.09005 * 109.47075 * 59.99521 * 6 5 4 39 39 H 1.08997 * 109.47402 * 185.00139 * 7 6 5 40 40 H 1.09002 * 109.47299 * 305.00186 * 7 6 5 41 41 H 0.96996 * 120.00087 * 359.97438 * 8 7 6 42 42 H 0.97004 * 119.99623 * 180.02562 * 12 11 9 43 43 H 1.08997 * 109.45763 * 49.40722 * 21 19 17 44 44 H 1.08998 * 109.44649 * 289.44682 * 21 19 17 45 45 H 1.08999 * 109.45620 * 169.90318 * 22 21 19 46 46 H 1.08997 * 109.43563 * 49.95782 * 22 21 19 47 47 H 1.08996 * 109.69320 * 290.09991 * 23 22 21 48 48 H 1.09004 * 109.71862 * 169.54678 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7105 -1.4425 5 8 1.2061 1.9937 -2.0812 6 6 1.3324 2.4167 -3.4404 7 6 -0.0566 2.6899 -4.0207 8 7 -0.6656 3.8217 -3.3175 9 6 -1.9176 4.2518 -3.6675 10 1 -2.4564 3.7563 -4.4617 11 6 -2.4949 5.3239 -3.0010 12 7 -1.8385 5.9273 -2.0328 13 14 -4.2032 5.9100 -3.4780 14 1 -5.1765 4.8044 -3.2896 15 1 -4.5887 7.0607 -2.6220 16 1 -4.2023 6.3314 -4.9020 17 6 2.1389 -1.1672 -0.0005 18 8 3.3487 -1.1690 0.0845 19 6 1.3891 -2.4702 -0.1067 20 1 0.3855 -2.3506 0.3014 21 6 1.3017 -2.8980 -1.5775 22 6 0.7793 -4.3347 -1.6631 23 6 1.8488 -5.3025 -1.1401 24 6 2.3300 -4.8001 0.1955 25 7 3.0100 -5.4434 1.1389 26 7 3.2120 -4.6361 2.1248 27 7 2.6924 -3.4817 1.8708 28 1 2.7102 -2.7075 2.4549 29 6 2.1235 -3.5411 0.6547 30 1 -0.3633 -0.0964 1.0231 31 1 -0.3633 0.9342 -0.4281 32 1 -0.3633 -0.8379 -0.5950 33 1 1.6085 2.0283 0.5140 34 1 3.1500 1.1383 0.5139 35 1 3.0733 2.6064 -1.4437 36 1 2.9642 0.9132 -1.9815 37 1 1.9301 3.3272 -3.4834 38 1 1.8207 1.6337 -4.0207 39 1 0.0326 2.9263 -5.0810 40 1 -0.6824 1.8060 -3.8970 41 1 -0.1819 4.2665 -2.6040 42 1 -2.2420 6.6762 -1.5667 43 1 2.2914 -2.8439 -2.0308 44 1 0.6219 -2.2323 -2.1093 45 1 0.5478 -4.5756 -2.7006 46 1 -0.1227 -4.4292 -1.0586 47 1 2.6831 -5.3412 -1.8404 48 1 1.4194 -6.2978 -1.0252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718010619.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:09 Heat of formation + Delta-G solvation = -3.790645 kcal Electronic energy + Delta-G solvation = -29806.182141 eV Core-core repulsion = 25704.545305 eV Total energy + Delta-G solvation = -4101.636836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.56995 -41.27254 -39.09360 -37.82789 -36.86085 -36.12253 -34.93735 -33.41741 -32.11185 -31.24901 -30.69494 -29.23154 -27.50022 -25.86910 -25.45441 -24.52171 -23.70743 -23.53067 -22.75258 -20.85894 -20.38678 -19.20857 -19.02643 -18.59736 -17.58230 -17.48178 -17.01923 -16.88861 -16.63891 -16.13369 -15.86118 -15.55956 -15.18129 -15.01245 -14.85261 -14.70466 -14.57346 -14.41108 -14.17195 -13.81779 -13.45924 -13.25821 -13.17468 -12.95296 -12.74893 -12.70824 -12.66845 -12.52971 -12.45472 -12.33931 -12.15570 -11.98113 -11.87819 -11.67389 -11.62846 -11.37581 -10.92243 -10.90870 -10.49360 -9.97083 -9.74958 -8.94259 -7.89873 -5.17851 0.44452 1.33103 1.39492 1.50733 1.53223 1.59280 1.70495 1.90993 2.60010 2.77232 3.09530 3.37601 3.44190 3.46536 3.71533 3.89483 3.98960 4.04508 4.06667 4.13216 4.24777 4.29174 4.29943 4.36029 4.42846 4.48051 4.49835 4.54108 4.60107 4.66457 4.69643 4.81663 4.88566 4.94487 5.02709 5.06736 5.10830 5.17432 5.18463 5.30545 5.38310 5.42193 5.53171 5.79770 6.22674 6.31133 6.37205 6.95027 7.33179 7.38683 8.15255 8.38938 9.33443 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.002336 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.089559 B =11984.066281 C =12314.426487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.595 5.595 3 C 0.118 3.882 4 C 0.047 3.953 5 O -0.387 6.387 6 C 0.067 3.933 7 C 0.152 3.848 8 N -0.740 5.740 9 C -0.243 4.243 10 H 0.076 0.924 11 C -0.076 4.076 12 N -0.969 5.969 13 Si 0.971 3.029 14 H -0.276 1.276 15 H -0.298 1.298 16 H -0.279 1.279 17 C 0.514 3.486 18 O -0.576 6.576 19 C -0.028 4.028 20 H 0.142 0.858 21 C -0.104 4.104 22 C -0.109 4.109 23 C -0.037 4.037 24 C -0.020 4.020 25 N -0.291 5.291 26 N -0.115 5.115 27 N -0.364 5.364 28 H 0.455 0.545 29 C 0.010 3.990 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.029 0.971 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 -19.802 2.966 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.326 5.326 3 C -0.005 4.005 4 C -0.030 4.030 5 O -0.306 6.306 6 C -0.010 4.010 7 C 0.026 3.974 8 N -0.383 5.383 9 C -0.374 4.374 10 H 0.094 0.906 11 C -0.268 4.268 12 N -0.620 5.620 13 Si 0.801 3.199 14 H -0.202 1.202 15 H -0.224 1.224 16 H -0.206 1.206 17 C 0.302 3.698 18 O -0.456 6.456 19 C -0.052 4.052 20 H 0.160 0.840 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.076 4.076 24 C -0.161 4.161 25 N -0.156 5.156 26 N -0.094 5.094 27 N -0.084 5.084 28 H 0.302 0.698 29 C -0.127 4.127 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.207 0.793 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.124 0.876 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.863 -20.798 4.000 22.263 hybrid contribution -0.607 2.195 -0.078 2.279 sum 6.255 -18.603 3.923 20.015 Atomic orbital electron populations 1.22106 0.77159 1.04906 1.02994 1.47849 1.08395 1.05066 1.71296 1.21572 0.98709 0.85129 0.95114 1.22912 0.86669 0.99370 0.94083 1.87964 1.29302 1.87575 1.25773 1.22638 0.97077 0.98408 0.82853 1.20859 0.91884 0.90053 0.94631 1.42479 1.17235 1.36220 1.42365 1.19607 0.93592 1.10425 1.13824 0.90576 1.25533 1.02403 0.99620 0.99226 1.69822 1.39446 1.25564 1.27152 0.85244 0.80170 0.77320 0.77212 1.20223 1.22439 1.20555 1.20775 0.87465 0.85755 0.75803 1.90722 1.15522 1.87815 1.51531 1.20164 0.99443 0.86974 0.98580 0.84011 1.21621 1.03260 0.99044 0.90349 1.21649 0.97701 0.91319 1.03960 1.20199 0.99359 1.00442 0.87635 1.22301 1.02537 0.91441 0.99854 1.74769 1.15684 1.25602 0.99578 1.78501 1.19517 0.89896 1.21475 1.44671 1.36124 1.12998 1.14574 0.69751 1.21549 1.04207 0.98584 0.88378 0.90588 0.91043 0.88892 0.88937 0.88324 0.92017 0.93561 0.93895 0.90871 0.94234 0.95312 0.79327 0.94164 0.91943 0.88058 0.87551 0.89693 0.89505 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 9.57 127.77 1.22 2.35 16 2 N -0.60 -11.35 2.84 -846.74 -2.40 -13.76 16 3 C 0.12 2.52 5.82 86.38 0.50 3.02 16 4 C 0.05 1.14 6.28 71.98 0.45 1.59 16 5 O -0.39 -11.61 9.21 -148.98 -1.37 -12.98 16 6 C 0.07 1.99 6.07 71.98 0.44 2.43 16 7 C 0.15 5.65 6.65 86.38 0.57 6.23 16 8 N -0.74 -36.33 5.55 -343.45 -1.91 -38.24 16 9 C -0.24 -13.11 9.99 84.04 0.84 -12.27 16 10 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 11 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 12 N -0.97 -58.07 13.06 21.65 0.28 -57.79 16 13 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 14 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 C 0.51 10.29 6.66 87.66 0.58 10.87 16 18 O -0.58 -15.83 15.89 -3.02 -0.05 -15.88 16 19 C -0.03 -0.41 2.09 -12.19 -0.03 -0.44 16 20 H 0.14 1.27 6.40 -2.39 -0.02 1.25 16 21 C -0.10 -1.24 5.16 30.78 0.16 -1.08 16 22 C -0.11 -0.90 5.90 30.77 0.18 -0.72 16 23 C -0.04 -0.49 6.30 29.96 0.19 -0.30 16 24 C -0.02 -0.43 7.11 41.75 0.30 -0.13 16 25 N -0.29 -7.86 12.40 -48.99 -0.61 -8.46 16 26 N -0.12 -3.03 13.40 37.02 0.50 -2.54 16 27 N -0.36 -7.53 6.84 -48.27 -0.33 -7.86 16 28 H 0.46 7.14 8.96 -219.68 -1.97 5.18 16 29 C 0.01 0.20 5.95 41.50 0.25 0.44 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.63 7.23 -2.39 -0.02 1.61 16 32 H 0.09 1.05 6.15 -2.39 -0.01 1.03 16 33 H 0.09 1.99 8.07 -2.39 -0.02 1.98 16 34 H 0.10 2.06 7.36 -2.38 -0.02 2.05 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.37 19.91 7.67 -92.71 -0.71 19.20 16 42 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 43 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 44 H 0.10 0.97 7.74 -2.39 -0.02 0.95 16 45 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.08 0.54 8.12 -2.39 -0.02 0.52 16 47 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -75.56 392.46 0.58 -74.98 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -1.69 Total: 27.52 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 6.13 Total: 8.23 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -4.47 Total: -128.64 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.42 Total: -28.86 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.56 0.58 -74.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718010619.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.191 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds