Wall clock time and date at job start Tue Mar 31 2020 21:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00042 * 2 1 4 4 C 1.52998 * 109.47162 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46747 * 65.00427 * 4 3 2 6 6 C 1.36937 * 119.99926 * 269.99313 * 5 4 3 7 7 H 1.08000 * 119.99618 * 134.84862 * 6 5 4 8 8 C 1.38803 * 120.00269 * 314.85214 * 6 5 4 9 9 N 1.31617 * 120.00146 * 1.61502 * 8 6 5 10 10 Si 1.86803 * 120.00142 * 181.61740 * 8 6 5 11 11 H 1.48496 * 109.47262 * 90.00129 * 10 8 6 12 12 H 1.48498 * 109.47028 * 209.99798 * 10 8 6 13 13 H 1.48501 * 109.46870 * 329.99669 * 10 8 6 14 14 C 1.46501 * 120.00095 * 89.99991 * 5 4 3 15 15 C 1.53042 * 109.46120 * 244.45449 * 14 5 4 16 16 C 1.53185 * 109.31329 * 178.62598 * 15 14 5 17 17 N 1.46923 * 108.77819 * 54.63825 * 16 15 14 18 18 C 1.34778 * 120.63433 * 126.36488 * 17 16 15 19 19 O 1.21596 * 119.99728 * 5.27021 * 18 17 16 20 20 C 1.47527 * 119.99979 * 184.99225 * 18 17 16 21 21 C 1.36599 * 125.76664 * 173.90594 * 20 18 17 22 22 N 1.34816 * 106.83521 * 179.84517 * 21 20 18 23 23 C 1.46492 * 126.59400 * 180.15607 * 22 21 20 24 24 N 1.40207 * 106.80998 * 0.41166 * 22 21 20 25 25 N 1.28755 * 108.37184 * 359.73716 * 24 22 21 26 26 C 1.46928 * 118.73503 * 306.64042 * 17 16 15 27 27 C 1.52766 * 109.00861 * 53.30970 * 26 17 16 28 28 H 1.08999 * 109.46740 * 299.99402 * 1 2 3 29 29 H 1.08998 * 109.47204 * 59.99874 * 1 2 3 30 30 H 1.09003 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46753 * 60.00439 * 3 2 1 32 32 H 1.08999 * 109.47099 * 300.00430 * 3 2 1 33 33 H 1.08997 * 109.47352 * 305.00410 * 4 3 2 34 34 H 1.09000 * 109.46934 * 185.00298 * 4 3 2 35 35 H 0.97002 * 120.00516 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.45828 * 4.42722 * 14 5 4 37 37 H 1.09000 * 109.49183 * 58.67688 * 15 14 5 38 38 H 1.08998 * 109.49929 * 298.58348 * 15 14 5 39 39 H 1.09000 * 109.58859 * 294.84823 * 16 15 14 40 40 H 1.09000 * 109.70430 * 174.49415 * 16 15 14 41 41 H 1.07999 * 126.58225 * 0.02562 * 21 20 18 42 42 H 1.09006 * 109.47229 * 270.28134 * 23 22 21 43 43 H 1.09007 * 109.47347 * 30.28108 * 23 22 21 44 44 H 1.09000 * 109.47648 * 150.28760 * 23 22 21 45 45 H 1.09003 * 109.58408 * 173.14052 * 26 17 16 46 46 H 1.08990 * 109.59057 * 293.56699 * 26 17 16 47 47 H 1.08994 * 109.56515 * 185.55142 * 27 26 17 48 48 H 1.09004 * 109.35548 * 65.49734 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0978 -0.7974 -1.3346 7 1 3.7107 -1.3220 -2.1955 8 6 4.7181 -1.5030 -0.3128 9 7 5.1615 -0.8674 0.7510 10 14 4.9238 -3.3548 -0.4477 11 1 6.2173 -3.6623 -1.1091 12 1 4.9075 -3.9548 0.9106 13 1 3.8101 -3.9192 -1.2516 14 6 4.2882 1.4000 -2.4130 15 6 3.2986 1.0956 -3.5401 16 6 3.6060 1.9956 -4.7410 17 7 5.0166 1.8219 -5.1134 18 6 5.3589 1.5029 -6.3773 19 8 4.5067 1.4500 -7.2430 20 6 6.7685 1.2238 -6.7116 21 6 7.2298 0.7780 -7.9176 22 7 8.5676 0.6564 -7.8031 23 6 9.4964 0.2117 -8.8450 24 7 8.8983 1.0318 -6.4933 25 7 7.8150 1.3597 -5.8794 26 6 6.0466 1.9967 -4.0802 27 6 5.7122 1.1021 -2.8879 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8508 0.5685 0.8426 34 1 3.9784 2.1766 0.0903 35 1 5.5953 -1.3604 1.4649 36 1 4.2104 2.4512 -2.1355 37 1 2.2828 1.2858 -3.1935 38 1 3.3932 0.0505 -3.8350 39 1 3.4241 3.0365 -4.4735 40 1 2.9694 1.7176 -5.5810 41 1 6.6370 0.5665 -8.7952 42 1 9.6078 -0.8715 -8.7943 43 1 9.1057 0.4913 -9.8235 44 1 10.4667 0.6842 -8.6926 45 1 7.0198 1.7169 -4.4836 46 1 6.0679 3.0376 -3.7578 47 1 6.4142 1.2968 -2.0773 48 1 5.7841 0.0569 -3.1890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723648230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:35 Heat of formation + Delta-G solvation = 64.756879 kcal Electronic energy + Delta-G solvation = -30580.724440 eV Core-core repulsion = 26482.060048 eV Total energy + Delta-G solvation = -4098.664392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.34754 -39.56616 -37.50793 -36.70843 -35.07227 -34.63053 -32.00806 -31.21948 -30.43003 -30.35300 -28.20942 -27.86548 -25.57334 -25.05889 -23.72742 -22.86702 -22.48753 -22.09004 -20.66326 -19.97491 -19.06173 -17.53414 -16.56092 -16.38519 -16.05725 -15.72256 -15.59029 -14.98631 -14.89408 -14.73479 -14.67292 -13.93452 -13.89696 -13.72204 -13.61716 -13.37296 -13.35820 -13.18622 -12.81717 -12.45612 -12.10948 -11.86638 -11.71185 -11.45527 -11.32191 -10.92537 -10.77024 -10.67259 -10.60790 -10.58013 -10.41685 -10.26910 -9.95507 -9.85657 -9.64704 -9.59719 -9.39449 -9.18644 -8.69542 -8.30537 -8.24210 -6.29452 -5.54041 -3.28630 1.00711 1.68117 1.86429 3.19871 3.42386 3.47114 3.53147 3.55849 4.11130 4.13216 4.58603 4.61522 4.62092 4.79976 4.83879 4.90481 5.17650 5.28768 5.37949 5.54617 5.63325 5.73688 5.77470 5.83125 5.87235 5.93115 6.03689 6.13821 6.14524 6.17944 6.24071 6.28027 6.42194 6.52398 6.63298 6.67470 6.80623 6.85269 6.89718 7.02580 7.26478 7.36965 7.65319 7.87020 7.89294 8.08495 8.21255 8.34395 8.82120 9.41296 9.98339 10.57366 11.41257 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.003481 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.276279 B = 8041.103603 C = 9190.056700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.047 3.953 4 C 0.133 3.867 5 N -0.574 5.574 6 C -0.226 4.226 7 H 0.052 0.948 8 C 0.022 3.978 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.177 3.823 15 C -0.140 4.140 16 C 0.114 3.886 17 N -0.583 5.583 18 C 0.600 3.400 19 O -0.554 6.554 20 C -0.088 4.088 21 C 0.089 3.911 22 N -0.364 5.364 23 C 0.088 3.912 24 N -0.068 5.068 25 N -0.198 5.198 26 C 0.066 3.934 27 C -0.127 4.127 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.123 0.877 34 H 0.034 0.966 35 H 0.252 0.748 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.205 0.795 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.136 0.864 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 6.002 -15.686 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C -0.032 4.032 4 C 0.006 3.994 5 N -0.293 5.293 6 C -0.356 4.356 7 H 0.070 0.930 8 C -0.177 4.177 9 N -0.542 5.542 10 Si 0.724 3.276 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.069 3.931 15 C -0.180 4.180 16 C -0.008 4.008 17 N -0.314 5.314 18 C 0.386 3.614 19 O -0.433 6.433 20 C -0.227 4.227 21 C -0.068 4.068 22 N -0.150 5.150 23 C -0.053 4.053 24 N -0.047 5.047 25 N -0.070 5.070 26 C -0.057 4.057 27 C -0.167 4.167 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.140 0.860 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.221 0.779 42 H 0.108 0.892 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.153 0.847 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.769 5.902 -14.993 16.803 hybrid contribution -0.950 -0.984 -0.716 1.544 sum 3.819 4.917 -15.709 16.898 Atomic orbital electron populations 1.22615 0.84595 1.01306 0.98229 1.88234 1.16196 1.27789 1.94759 1.23477 0.99471 0.83885 0.96351 1.21385 0.86893 0.96711 0.94367 1.43666 1.75757 1.02551 1.07345 1.18719 1.29669 0.82123 1.05128 0.92998 1.25328 0.97202 0.97531 0.97615 1.69577 1.42218 1.34256 1.08179 0.86432 0.77851 0.86512 0.76807 1.21627 1.21817 1.20546 1.20376 0.91427 0.93362 0.87944 1.22406 1.00482 0.99958 0.95148 1.21731 0.80808 0.99640 0.98660 1.47959 1.08516 1.66509 1.08375 1.16792 0.84817 0.77039 0.82763 1.90758 1.50015 1.54921 1.47568 1.21544 0.95219 1.13841 0.92132 1.23317 0.84451 0.98234 1.00767 1.50352 1.06458 1.45635 1.12529 1.22185 0.93471 1.01890 0.87763 1.82057 1.17726 1.18265 0.86659 1.74224 0.96443 1.12278 1.24056 1.22922 0.93711 0.99879 0.89208 1.22104 0.98962 0.99979 0.95652 0.95685 0.95498 0.90870 0.96148 0.95925 0.85991 0.94815 0.93754 0.93648 0.91701 0.91465 0.91963 0.89814 0.77872 0.89213 0.88466 0.88098 0.84747 0.92391 0.90997 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.94 10.18 -35.23 -0.36 -8.30 16 3 C 0.05 0.98 6.28 37.16 0.23 1.21 16 4 C 0.13 3.10 5.70 -4.04 -0.02 3.07 16 5 N -0.57 -13.79 2.34 -165.62 -0.39 -14.18 16 6 C -0.23 -6.08 7.58 -15.06 -0.11 -6.19 16 7 H 0.05 1.46 7.09 -52.49 -0.37 1.08 16 8 C 0.02 0.60 5.37 -17.43 -0.09 0.51 16 9 N -0.90 -25.60 10.79 55.49 0.60 -25.00 16 10 Si 0.89 22.35 29.55 -169.99 -5.02 17.32 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.18 3.59 2.60 -67.89 -0.18 3.41 16 15 C -0.14 -2.61 5.37 -26.61 -0.14 -2.76 16 16 C 0.11 1.85 6.42 -3.72 -0.02 1.83 16 17 N -0.58 -9.78 2.98 -174.26 -0.52 -10.30 16 18 C 0.60 10.01 7.69 -12.47 -0.10 9.91 16 19 O -0.55 -10.04 16.31 5.28 0.09 -9.96 16 20 C -0.09 -1.28 6.78 -83.55 -0.57 -1.85 16 21 C 0.09 0.94 11.31 -16.83 -0.19 0.75 16 22 N -0.36 -3.52 4.03 -67.85 -0.27 -3.79 16 23 C 0.09 0.35 11.51 59.84 0.69 1.04 16 24 N -0.07 -0.92 13.78 60.35 0.83 -0.09 16 25 N -0.20 -3.02 8.63 32.85 0.28 -2.74 16 26 C 0.07 1.11 6.29 -3.93 -0.02 1.08 16 27 C -0.13 -2.53 5.22 -26.83 -0.14 -2.67 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.12 3.30 5.20 -51.93 -0.27 3.03 16 34 H 0.03 0.73 7.89 -51.93 -0.41 0.32 16 35 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.05 0.87 7.77 -51.93 -0.40 0.47 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.42 7.28 -51.93 -0.38 1.04 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.37 7.03 -51.93 -0.37 1.00 16 41 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.10 0.12 8.14 -51.92 -0.42 -0.30 16 44 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.14 2.26 3.60 -131.83 -0.47 1.79 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 48 H 0.07 1.54 7.62 -51.93 -0.40 1.15 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -33.84 386.61 -6.19 -40.04 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.70 Total: 0.19 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 0.44 Total: 10.98 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.53 Total: -56.10 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.27 Total: -18.25 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.84 -6.19 -40.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723648230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.794 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds