Wall clock time and date at job start Tue Mar 31 2020 21:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00042 * 2 1 4 4 C 1.52998 * 109.47162 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46747 * 65.00427 * 4 3 2 6 6 C 1.36937 * 119.99926 * 269.99313 * 5 4 3 7 7 H 1.08000 * 119.99618 * 134.84862 * 6 5 4 8 8 C 1.38803 * 120.00269 * 314.85214 * 6 5 4 9 9 N 1.31617 * 120.00146 * 1.61502 * 8 6 5 10 10 Si 1.86803 * 120.00142 * 181.61740 * 8 6 5 11 11 H 1.48496 * 109.47262 * 90.00129 * 10 8 6 12 12 H 1.48498 * 109.47028 * 209.99798 * 10 8 6 13 13 H 1.48501 * 109.46870 * 329.99669 * 10 8 6 14 14 C 1.46501 * 120.00095 * 89.99991 * 5 4 3 15 15 C 1.53042 * 109.46120 * 244.45449 * 14 5 4 16 16 C 1.53185 * 109.31329 * 178.62598 * 15 14 5 17 17 N 1.46923 * 108.77819 * 54.63825 * 16 15 14 18 18 C 1.34778 * 120.63433 * 126.36488 * 17 16 15 19 19 O 1.21596 * 119.99728 * 5.27021 * 18 17 16 20 20 C 1.47527 * 119.99979 * 184.99225 * 18 17 16 21 21 C 1.36599 * 125.76664 * 173.90594 * 20 18 17 22 22 N 1.34816 * 106.83521 * 179.84517 * 21 20 18 23 23 C 1.46492 * 126.59400 * 180.15607 * 22 21 20 24 24 N 1.40207 * 106.80998 * 0.41166 * 22 21 20 25 25 N 1.28755 * 108.37184 * 359.73716 * 24 22 21 26 26 C 1.46928 * 118.73503 * 306.64042 * 17 16 15 27 27 C 1.52766 * 109.00861 * 53.30970 * 26 17 16 28 28 H 1.08999 * 109.46740 * 299.99402 * 1 2 3 29 29 H 1.08998 * 109.47204 * 59.99874 * 1 2 3 30 30 H 1.09003 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46753 * 60.00439 * 3 2 1 32 32 H 1.08999 * 109.47099 * 300.00430 * 3 2 1 33 33 H 1.08997 * 109.47352 * 305.00410 * 4 3 2 34 34 H 1.09000 * 109.46934 * 185.00298 * 4 3 2 35 35 H 0.97002 * 120.00516 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.45828 * 4.42722 * 14 5 4 37 37 H 1.09000 * 109.49183 * 58.67688 * 15 14 5 38 38 H 1.08998 * 109.49929 * 298.58348 * 15 14 5 39 39 H 1.09000 * 109.58859 * 294.84823 * 16 15 14 40 40 H 1.09000 * 109.70430 * 174.49415 * 16 15 14 41 41 H 1.07999 * 126.58225 * 0.02562 * 21 20 18 42 42 H 1.09006 * 109.47229 * 270.28134 * 23 22 21 43 43 H 1.09007 * 109.47347 * 30.28108 * 23 22 21 44 44 H 1.09000 * 109.47648 * 150.28760 * 23 22 21 45 45 H 1.09003 * 109.58408 * 173.14052 * 26 17 16 46 46 H 1.08990 * 109.59057 * 293.56699 * 26 17 16 47 47 H 1.08994 * 109.56515 * 185.55142 * 27 26 17 48 48 H 1.09004 * 109.35548 * 65.49734 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0978 -0.7974 -1.3346 7 1 3.7107 -1.3220 -2.1955 8 6 4.7181 -1.5030 -0.3128 9 7 5.1615 -0.8674 0.7510 10 14 4.9238 -3.3548 -0.4477 11 1 6.2173 -3.6623 -1.1091 12 1 4.9075 -3.9548 0.9106 13 1 3.8101 -3.9192 -1.2516 14 6 4.2882 1.4000 -2.4130 15 6 3.2986 1.0956 -3.5401 16 6 3.6060 1.9956 -4.7410 17 7 5.0166 1.8219 -5.1134 18 6 5.3589 1.5029 -6.3773 19 8 4.5067 1.4500 -7.2430 20 6 6.7685 1.2238 -6.7116 21 6 7.2298 0.7780 -7.9176 22 7 8.5676 0.6564 -7.8031 23 6 9.4964 0.2117 -8.8450 24 7 8.8983 1.0318 -6.4933 25 7 7.8150 1.3597 -5.8794 26 6 6.0466 1.9967 -4.0802 27 6 5.7122 1.1021 -2.8879 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8508 0.5685 0.8426 34 1 3.9784 2.1766 0.0903 35 1 5.5953 -1.3604 1.4649 36 1 4.2104 2.4512 -2.1355 37 1 2.2828 1.2858 -3.1935 38 1 3.3932 0.0505 -3.8350 39 1 3.4241 3.0365 -4.4735 40 1 2.9694 1.7176 -5.5810 41 1 6.6370 0.5665 -8.7952 42 1 9.6078 -0.8715 -8.7943 43 1 9.1057 0.4913 -9.8235 44 1 10.4667 0.6842 -8.6926 45 1 7.0198 1.7169 -4.4836 46 1 6.0679 3.0376 -3.7578 47 1 6.4142 1.2968 -2.0773 48 1 5.7841 0.0569 -3.1890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723648230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:33 Heat of formation + Delta-G solvation = 41.378362 kcal Electronic energy + Delta-G solvation = -30581.738209 eV Core-core repulsion = 26482.060048 eV Total energy + Delta-G solvation = -4099.678161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.28462 -40.89046 -39.10396 -38.24365 -36.54018 -35.63578 -33.74186 -32.54286 -32.08800 -31.56819 -29.74222 -28.71179 -27.13468 -26.59745 -25.28272 -24.20474 -23.75962 -23.11556 -22.19307 -21.57551 -20.44469 -18.72482 -18.06374 -17.53319 -17.25588 -17.16368 -16.85875 -16.65931 -16.49902 -16.05287 -15.78736 -15.58165 -15.42625 -15.14440 -14.99343 -14.56170 -14.47427 -14.11845 -14.01023 -13.81584 -13.39232 -13.33212 -13.11186 -13.04792 -12.86401 -12.72269 -12.60947 -12.32508 -12.22952 -12.16297 -11.84031 -11.66845 -11.46004 -11.38753 -11.32511 -11.22354 -10.66078 -10.39842 -10.37632 -10.27043 -9.58511 -8.28129 -7.59596 -5.38343 0.16461 0.57791 1.19576 1.44274 1.45830 1.52982 1.97939 2.23505 2.56847 3.10965 3.27339 3.43876 3.46252 3.67882 3.79711 3.96616 4.04492 4.26593 4.27427 4.36237 4.39305 4.46571 4.47908 4.51172 4.57488 4.64811 4.67257 4.70303 4.74085 4.77549 4.85579 4.86397 4.96377 5.00423 5.08216 5.18362 5.21053 5.36847 5.46609 5.54767 5.65848 5.76098 5.78406 6.08223 6.37113 6.60460 6.79792 6.84488 7.11582 7.38446 8.02571 8.54352 9.29061 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.003481 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.276279 B = 8041.103603 C = 9190.056700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.056 3.944 4 C 0.129 3.871 5 N -0.586 5.586 6 C -0.216 4.216 7 H 0.035 0.965 8 C -0.024 4.024 9 N -0.919 5.919 10 Si 0.939 3.061 11 H -0.290 1.290 12 H -0.293 1.293 13 H -0.280 1.280 14 C 0.174 3.826 15 C -0.125 4.125 16 C 0.121 3.879 17 N -0.590 5.590 18 C 0.599 3.401 19 O -0.572 6.572 20 C -0.123 4.123 21 C 0.112 3.888 22 N -0.348 5.348 23 C 0.074 3.926 24 N -0.094 5.094 25 N -0.225 5.225 26 C 0.078 3.922 27 C -0.114 4.114 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.246 0.754 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.241 0.759 42 H 0.105 0.895 43 H 0.133 0.867 44 H 0.110 0.890 45 H 0.140 0.860 46 H 0.076 0.924 47 H 0.052 0.948 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 6.879 -18.054 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.023 4.023 4 C 0.003 3.997 5 N -0.306 5.306 6 C -0.347 4.347 7 H 0.052 0.948 8 C -0.220 4.220 9 N -0.565 5.565 10 Si 0.769 3.231 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.067 3.933 15 C -0.165 4.165 16 C -0.001 4.001 17 N -0.321 5.321 18 C 0.387 3.613 19 O -0.452 6.452 20 C -0.263 4.263 21 C -0.046 4.046 22 N -0.133 5.133 23 C -0.064 4.064 24 N -0.074 5.074 25 N -0.097 5.097 26 C -0.045 4.045 27 C -0.154 4.154 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.257 0.743 42 H 0.123 0.877 43 H 0.152 0.848 44 H 0.128 0.872 45 H 0.156 0.844 46 H 0.095 0.905 47 H 0.071 0.929 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.600 6.783 -17.381 19.217 hybrid contribution -0.876 -1.280 -0.110 1.555 sum 3.725 5.503 -17.491 18.710 Atomic orbital electron populations 1.22793 0.81898 1.02436 0.99863 1.88154 1.19293 1.28901 1.95129 1.23272 0.97354 0.83724 0.97903 1.21272 0.89153 0.96417 0.92858 1.43818 1.76248 1.02004 1.08541 1.18650 1.28351 0.83705 1.04000 0.94754 1.25810 0.98016 1.00318 0.97850 1.69749 1.43371 1.34844 1.08504 0.85709 0.77501 0.83442 0.76412 1.21699 1.21937 1.20550 1.20538 0.91890 0.93654 0.87222 1.22191 1.00070 0.98642 0.95576 1.21674 0.80815 1.00283 0.97355 1.48012 1.08529 1.66879 1.08639 1.17062 0.85722 0.76207 0.82344 1.90732 1.50862 1.55745 1.47891 1.21512 0.94258 1.16650 0.93898 1.23823 0.84814 0.95640 1.00364 1.50721 1.06982 1.43555 1.12049 1.22751 0.93142 1.02928 0.87623 1.81949 1.17367 1.19394 0.88662 1.74079 0.97000 1.13371 1.25250 1.22798 0.94030 0.99892 0.87816 1.21917 0.98445 0.98631 0.96444 0.93642 0.94084 0.90141 0.93997 0.94634 0.89531 0.93490 0.94409 0.91808 0.91423 0.94651 0.89424 0.89692 0.74258 0.87683 0.84839 0.87180 0.84389 0.90535 0.92891 0.94810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -17.66 10.18 -148.98 -1.52 -19.18 16 3 C 0.06 2.27 6.28 71.98 0.45 2.72 16 4 C 0.13 6.05 5.70 86.38 0.49 6.54 16 5 N -0.59 -28.62 2.34 -677.90 -1.59 -30.21 16 6 C -0.22 -11.94 7.58 84.03 0.64 -11.30 16 7 H 0.03 2.01 7.09 -2.91 -0.02 1.99 16 8 C -0.02 -1.37 5.37 84.86 0.46 -0.92 16 9 N -0.92 -53.99 10.79 21.65 0.23 -53.75 16 10 Si 0.94 47.14 29.55 68.60 2.03 49.17 16 11 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 13 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 14 C 0.17 7.06 2.60 45.02 0.12 7.18 16 15 C -0.12 -4.64 5.37 30.67 0.16 -4.47 16 16 C 0.12 3.78 6.42 86.36 0.55 4.34 16 17 N -0.59 -19.40 2.98 -823.51 -2.45 -21.86 16 18 C 0.60 19.49 7.69 86.69 0.67 20.16 16 19 O -0.57 -20.04 16.31 -4.02 -0.07 -20.10 16 20 C -0.12 -3.46 6.78 40.82 0.28 -3.19 16 21 C 0.11 2.08 11.31 83.85 0.95 3.03 16 22 N -0.35 -5.86 4.03 -368.59 -1.49 -7.35 16 23 C 0.07 0.32 11.51 127.77 1.47 1.80 16 24 N -0.09 -2.48 13.78 37.02 0.51 -1.97 16 25 N -0.23 -6.82 8.63 -49.99 -0.43 -7.26 16 26 C 0.08 2.60 6.29 86.22 0.54 3.14 16 27 C -0.11 -4.67 5.22 30.53 0.16 -4.51 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 4.80 5.20 -2.39 -0.01 4.79 16 34 H 0.05 2.02 7.89 -2.39 -0.02 2.00 16 35 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.06 2.37 7.77 -2.39 -0.02 2.35 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.03 1.52 7.28 -2.39 -0.02 1.50 16 39 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.08 2.67 7.03 -2.39 -0.02 2.65 16 41 H 0.24 2.49 8.06 -2.91 -0.02 2.46 16 42 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 43 H 0.13 -0.31 8.14 -2.38 -0.02 -0.33 16 44 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.14 4.69 3.60 -105.78 -0.38 4.30 16 46 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 48 H 0.03 1.58 7.62 -2.38 -0.02 1.56 16 Total: -1.00 -76.50 386.61 4.01 -72.49 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.59 Total: 13.38 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 8.19 Total: 26.63 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -5.22 Total: -122.40 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.58 Total: -39.28 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -76.50 4.01 -72.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723648230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.870 kcal (2) G-P(sol) polarization free energy of solvation -76.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds