Wall clock time and date at job start Tue Mar 31 2020 21:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35311 * 125.86634 * 2 1 4 4 C 1.35353 * 106.17490 * 180.18339 * 3 2 1 5 5 C 1.50697 * 126.75366 * 179.85256 * 4 3 2 6 6 C 1.53003 * 109.47356 * 124.70991 * 5 4 3 7 7 C 1.50697 * 109.47356 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00184 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00128 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00214 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47164 * 176.66455 * 10 9 7 12 12 N 1.46497 * 109.54327 * 54.84832 * 11 10 9 13 13 C 1.36932 * 120.00285 * 62.21846 * 12 11 10 14 14 H 1.08000 * 119.99971 * 354.07483 * 13 12 11 15 15 C 1.38820 * 120.00190 * 174.07144 * 13 12 11 16 16 N 1.31623 * 119.99467 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00018 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46740 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.47499 * 299.99993 * 17 15 13 20 20 H 1.48504 * 109.47201 * 60.00433 * 17 15 13 21 21 C 1.53177 * 109.54067 * 175.02187 * 11 10 9 22 22 C 1.53285 * 109.06031 * 176.85195 * 21 11 10 23 23 O 1.42900 * 109.46053 * 302.44532 * 22 21 11 24 24 C 1.42904 * 114.09943 * 61.15813 * 23 22 21 25 25 C 1.53087 * 109.41425 * 298.84255 * 24 23 22 26 26 N 1.33773 * 106.49252 * 359.58900 * 4 3 2 27 27 N 1.28626 * 108.89173 * 0.26285 * 26 4 3 28 28 H 1.08994 * 109.47735 * 270.29689 * 1 2 3 29 29 H 1.08999 * 109.47292 * 30.29953 * 1 2 3 30 30 H 1.09001 * 109.47107 * 150.29462 * 1 2 3 31 31 H 1.07997 * 126.91892 * 0.03666 * 3 2 1 32 32 H 1.08994 * 109.47215 * 4.71402 * 5 4 3 33 33 H 1.09000 * 109.47616 * 244.71089 * 5 4 3 34 34 H 1.09007 * 109.46801 * 59.99926 * 6 5 4 35 35 H 1.09001 * 109.47255 * 300.00243 * 6 5 4 36 36 H 0.97003 * 119.99486 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.47192 * 56.66264 * 10 9 7 38 38 H 1.09005 * 109.46742 * 296.66034 * 10 9 7 39 39 H 0.97006 * 119.99845 * 242.22108 * 12 11 10 40 40 H 0.97000 * 119.99280 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.52689 * 296.83908 * 21 11 10 42 42 H 1.08998 * 109.52129 * 57.03151 * 21 11 10 43 43 H 1.09007 * 109.45488 * 182.44942 * 22 21 11 44 44 H 1.09001 * 109.46894 * 62.45037 * 22 21 11 45 45 H 1.08998 * 109.48150 * 178.85483 * 24 23 22 46 46 H 1.09003 * 109.48614 * 58.82955 * 24 23 22 47 47 H 1.08995 * 109.52701 * 297.70105 * 25 24 23 48 48 H 1.09004 * 109.57496 * 177.54261 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6405 -0.0042 5 6 4.7880 1.4734 -0.0090 6 6 5.6711 1.0715 1.1740 7 6 6.9267 1.9049 1.1696 8 8 7.0985 2.7380 0.3051 9 7 7.8592 1.7238 2.1257 10 6 9.0795 2.5343 2.1217 11 6 9.9242 2.1904 3.3502 12 7 10.1787 0.7481 3.3817 13 6 10.8827 0.1547 2.3681 14 1 11.1675 0.7300 1.4996 15 6 11.2304 -1.1863 2.4569 16 7 10.8838 -1.8872 3.5157 17 14 12.1901 -1.9959 1.0739 18 1 12.4345 -3.4216 1.4096 19 1 11.4095 -1.9104 -0.1865 20 1 13.4899 -1.2991 0.8994 21 6 11.2558 2.9444 3.2837 22 6 12.0596 2.6541 4.5562 23 8 11.2936 3.0357 5.7006 24 6 10.0591 2.3291 5.8386 25 6 9.1751 2.6065 4.6199 26 7 3.4575 -0.6952 0.0027 27 7 2.2192 -1.0431 0.0050 28 1 -0.3634 0.0053 1.0276 29 1 -0.3634 0.8873 -0.5185 30 1 -0.3633 -0.8926 -0.5093 31 1 1.9381 2.1281 0.0006 32 1 4.5250 2.5278 0.0758 33 1 5.3302 1.3080 -0.9399 34 1 5.9342 0.0170 1.0893 35 1 5.1289 1.2370 2.1050 36 1 7.7222 1.0567 2.8165 37 1 8.8138 3.5911 2.1477 38 1 9.6514 2.3255 1.2176 39 1 9.8486 0.2134 4.1207 40 1 11.1264 -2.8244 3.5775 41 1 11.8189 2.6132 2.4112 42 1 11.0649 4.0151 3.2102 43 1 12.9898 3.2219 4.5356 44 1 12.2850 1.5889 4.6084 45 1 9.5482 2.6628 6.7418 46 1 10.2580 1.2596 5.9075 47 1 8.9422 3.6703 4.5733 48 1 8.2508 2.0346 4.7014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724372978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:10 Heat of formation + Delta-G solvation = 21.726687 kcal Electronic energy + Delta-G solvation = -29629.995699 eV Core-core repulsion = 25529.465377 eV Total energy + Delta-G solvation = -4100.530322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.39982 -39.65797 -38.75616 -35.85753 -35.25738 -33.50529 -33.38122 -32.13701 -30.60433 -30.32752 -29.14356 -28.21260 -26.98316 -24.71168 -24.01066 -22.97433 -22.26204 -21.98583 -20.97866 -19.74597 -18.57296 -17.45811 -17.23076 -16.86758 -16.59639 -15.64199 -15.60181 -15.46261 -15.25542 -14.90738 -14.64498 -14.28418 -14.08696 -13.90616 -13.75731 -13.54454 -13.31172 -13.18674 -12.67830 -12.48200 -12.16919 -12.16483 -11.97248 -11.73634 -11.62586 -11.41991 -11.25244 -10.87519 -10.85069 -10.76021 -10.72929 -10.34942 -10.22919 -10.00739 -9.72979 -9.68237 -9.47113 -9.22014 -9.17944 -8.74916 -8.40838 -7.07337 -5.83896 -3.14458 1.39614 2.13257 2.40391 3.11431 3.42556 3.47873 3.49275 3.73256 4.08880 4.31442 4.41147 4.54548 4.54779 4.70616 4.83005 4.87445 5.12506 5.20129 5.26076 5.28606 5.34100 5.41387 5.55697 5.57575 5.59377 5.68499 5.73176 5.81137 5.96534 6.03634 6.10937 6.12518 6.14592 6.21654 6.25773 6.34062 6.35148 6.45034 6.58241 6.60558 6.76397 6.82547 7.07195 7.67449 7.74950 8.08942 8.33329 8.36945 8.73249 9.45964 9.96152 10.32766 11.37725 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.002830 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.755210 B = 9891.945568 C =11261.894549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.299 5.299 3 C -0.052 4.052 4 C -0.012 4.012 5 C -0.015 4.015 6 C -0.134 4.134 7 C 0.511 3.489 8 O -0.561 6.561 9 N -0.701 5.701 10 C 0.118 3.882 11 C 0.189 3.811 12 N -0.712 5.712 13 C -0.237 4.237 14 H 0.069 0.931 15 C -0.005 4.005 16 N -0.930 5.930 17 Si 0.902 3.098 18 H -0.292 1.292 19 H -0.286 1.286 20 H -0.286 1.286 21 C -0.152 4.152 22 C 0.070 3.930 23 O -0.394 6.394 24 C 0.066 3.934 25 C -0.150 4.150 26 N -0.260 5.260 27 N -0.088 5.088 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.190 0.810 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.403 0.597 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.338 9.321 -1.219 20.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.092 5.092 3 C -0.203 4.203 4 C -0.151 4.151 5 C -0.054 4.054 6 C -0.175 4.175 7 C 0.297 3.703 8 O -0.441 6.441 9 N -0.351 5.351 10 C -0.008 4.008 11 C 0.096 3.904 12 N -0.354 5.354 13 C -0.368 4.368 14 H 0.087 0.913 15 C -0.201 4.201 16 N -0.577 5.577 17 Si 0.733 3.267 18 H -0.218 1.218 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.192 4.192 22 C -0.007 4.007 23 O -0.313 6.313 24 C -0.011 4.011 25 C -0.188 4.188 26 N -0.127 5.127 27 N -0.068 5.068 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.207 0.793 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.239 0.761 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.037 8.418 -1.814 19.987 hybrid contribution -0.001 -0.152 -0.498 0.520 sum -18.037 8.266 -2.311 19.975 Atomic orbital electron populations 1.22234 0.72929 1.05804 1.04927 1.47246 1.09315 1.05054 1.47629 1.23400 0.90892 0.94665 1.11326 1.22132 0.95428 0.91472 1.06021 1.19597 0.89220 0.97094 0.99512 1.21559 0.94193 1.01903 0.99827 1.20491 0.84914 0.83577 0.81338 1.90645 1.79625 1.36452 1.37331 1.45776 1.19368 1.40039 1.29911 1.21792 0.85470 0.93010 1.00564 1.19836 0.92303 0.86854 0.91362 1.42466 1.65539 1.00412 1.27011 1.19001 1.27410 0.92913 0.97464 0.91284 1.24692 1.01097 0.96874 0.97469 1.69632 1.51142 1.08384 1.28565 0.86354 0.80024 0.78508 0.81826 1.21774 1.21215 1.21310 1.22482 0.98453 0.98850 0.99428 1.22485 0.92826 1.01114 0.84242 1.87790 1.32821 1.64311 1.46354 1.22459 0.84785 0.97147 0.96723 1.22339 0.99015 1.01485 0.95992 1.75111 1.09161 1.12155 1.16250 1.78341 0.96554 1.12098 1.19764 0.89135 0.88395 0.88116 0.79250 0.89489 0.89234 0.87966 0.89415 0.76128 0.92885 0.91776 0.78094 0.93412 0.90445 0.92717 0.90451 0.91216 0.90153 0.92174 0.91317 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.39 59.85 0.68 0.98 16 2 N -0.30 -2.77 3.74 -68.06 -0.25 -3.03 16 3 C -0.05 -0.47 11.54 -17.05 -0.20 -0.67 16 4 C -0.01 -0.15 6.50 -82.78 -0.54 -0.69 16 5 C -0.01 -0.18 5.08 -27.88 -0.14 -0.32 16 6 C -0.13 -1.81 5.68 -27.88 -0.16 -1.97 16 7 C 0.51 8.51 7.83 -10.99 -0.09 8.43 16 8 O -0.56 -10.92 15.98 5.56 0.09 -10.83 16 9 N -0.70 -11.82 5.13 -60.30 -0.31 -12.13 16 10 C 0.12 2.10 4.37 -4.04 -0.02 2.09 16 11 C 0.19 3.33 0.41 -131.64 -0.05 3.28 16 12 N -0.71 -15.26 3.61 -47.06 -0.17 -15.43 16 13 C -0.24 -5.91 8.67 -15.06 -0.13 -6.04 16 14 H 0.07 1.74 6.78 -52.49 -0.36 1.39 16 15 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 16 N -0.93 -26.19 13.07 55.49 0.73 -25.47 16 17 Si 0.90 21.90 29.55 -169.99 -5.02 16.88 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.15 -2.64 4.80 -26.49 -0.13 -2.76 16 22 C 0.07 1.23 6.68 37.31 0.25 1.48 16 23 O -0.39 -6.90 10.77 -35.23 -0.38 -7.28 16 24 C 0.07 1.04 6.67 37.20 0.25 1.29 16 25 C -0.15 -2.28 4.80 -26.59 -0.13 -2.41 16 26 N -0.26 -3.94 12.40 33.29 0.41 -3.53 16 27 N -0.09 -1.19 13.17 60.35 0.79 -0.40 16 28 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.10 1.50 8.14 -51.92 -0.42 1.08 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.40 6.64 7.42 -40.82 -0.30 6.33 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.31 7.47 -51.93 -0.39 0.92 16 39 H 0.38 8.86 6.81 -40.82 -0.28 8.58 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.08 1.44 7.19 -51.93 -0.37 1.07 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 44 H 0.07 1.43 7.75 -51.93 -0.40 1.02 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.06 1.06 7.14 -51.93 -0.37 0.69 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.07 0.98 7.37 -51.93 -0.38 0.60 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -33.42 390.55 -6.20 -39.63 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -7.48 Total: 13.25 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.49 Total: 2.45 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 1.20 Total: -59.98 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.29 Total: -18.11 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.42 -6.20 -39.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724372978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.353 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds