Wall clock time and date at job start Tue Mar 31 2020 21:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35311 * 125.86634 * 2 1 4 4 C 1.35353 * 106.17490 * 180.18339 * 3 2 1 5 5 C 1.50697 * 126.75366 * 179.85256 * 4 3 2 6 6 C 1.53003 * 109.47356 * 124.70991 * 5 4 3 7 7 C 1.50697 * 109.47356 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00184 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00128 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00214 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47164 * 176.66455 * 10 9 7 12 12 N 1.46497 * 109.54327 * 54.84832 * 11 10 9 13 13 C 1.36932 * 120.00285 * 62.21846 * 12 11 10 14 14 H 1.08000 * 119.99971 * 354.07483 * 13 12 11 15 15 C 1.38820 * 120.00190 * 174.07144 * 13 12 11 16 16 N 1.31623 * 119.99467 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00018 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46740 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.47499 * 299.99993 * 17 15 13 20 20 H 1.48504 * 109.47201 * 60.00433 * 17 15 13 21 21 C 1.53177 * 109.54067 * 175.02187 * 11 10 9 22 22 C 1.53285 * 109.06031 * 176.85195 * 21 11 10 23 23 O 1.42900 * 109.46053 * 302.44532 * 22 21 11 24 24 C 1.42904 * 114.09943 * 61.15813 * 23 22 21 25 25 C 1.53087 * 109.41425 * 298.84255 * 24 23 22 26 26 N 1.33773 * 106.49252 * 359.58900 * 4 3 2 27 27 N 1.28626 * 108.89173 * 0.26285 * 26 4 3 28 28 H 1.08994 * 109.47735 * 270.29689 * 1 2 3 29 29 H 1.08999 * 109.47292 * 30.29953 * 1 2 3 30 30 H 1.09001 * 109.47107 * 150.29462 * 1 2 3 31 31 H 1.07997 * 126.91892 * 0.03666 * 3 2 1 32 32 H 1.08994 * 109.47215 * 4.71402 * 5 4 3 33 33 H 1.09000 * 109.47616 * 244.71089 * 5 4 3 34 34 H 1.09007 * 109.46801 * 59.99926 * 6 5 4 35 35 H 1.09001 * 109.47255 * 300.00243 * 6 5 4 36 36 H 0.97003 * 119.99486 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.47192 * 56.66264 * 10 9 7 38 38 H 1.09005 * 109.46742 * 296.66034 * 10 9 7 39 39 H 0.97006 * 119.99845 * 242.22108 * 12 11 10 40 40 H 0.97000 * 119.99280 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.52689 * 296.83908 * 21 11 10 42 42 H 1.08998 * 109.52129 * 57.03151 * 21 11 10 43 43 H 1.09007 * 109.45488 * 182.44942 * 22 21 11 44 44 H 1.09001 * 109.46894 * 62.45037 * 22 21 11 45 45 H 1.08998 * 109.48150 * 178.85483 * 24 23 22 46 46 H 1.09003 * 109.48614 * 58.82955 * 24 23 22 47 47 H 1.08995 * 109.52701 * 297.70105 * 25 24 23 48 48 H 1.09004 * 109.57496 * 177.54261 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6405 -0.0042 5 6 4.7880 1.4734 -0.0090 6 6 5.6711 1.0715 1.1740 7 6 6.9267 1.9049 1.1696 8 8 7.0985 2.7380 0.3051 9 7 7.8592 1.7238 2.1257 10 6 9.0795 2.5343 2.1217 11 6 9.9242 2.1904 3.3502 12 7 10.1787 0.7481 3.3817 13 6 10.8827 0.1547 2.3681 14 1 11.1675 0.7300 1.4996 15 6 11.2304 -1.1863 2.4569 16 7 10.8838 -1.8872 3.5157 17 14 12.1901 -1.9959 1.0739 18 1 12.4345 -3.4216 1.4096 19 1 11.4095 -1.9104 -0.1865 20 1 13.4899 -1.2991 0.8994 21 6 11.2558 2.9444 3.2837 22 6 12.0596 2.6541 4.5562 23 8 11.2936 3.0357 5.7006 24 6 10.0591 2.3291 5.8386 25 6 9.1751 2.6065 4.6199 26 7 3.4575 -0.6952 0.0027 27 7 2.2192 -1.0431 0.0050 28 1 -0.3634 0.0053 1.0276 29 1 -0.3634 0.8873 -0.5185 30 1 -0.3633 -0.8926 -0.5093 31 1 1.9381 2.1281 0.0006 32 1 4.5250 2.5278 0.0758 33 1 5.3302 1.3080 -0.9399 34 1 5.9342 0.0170 1.0893 35 1 5.1289 1.2370 2.1050 36 1 7.7222 1.0567 2.8165 37 1 8.8138 3.5911 2.1477 38 1 9.6514 2.3255 1.2176 39 1 9.8486 0.2134 4.1207 40 1 11.1264 -2.8244 3.5775 41 1 11.8189 2.6132 2.4112 42 1 11.0649 4.0151 3.2102 43 1 12.9898 3.2219 4.5356 44 1 12.2850 1.5889 4.6084 45 1 9.5482 2.6628 6.7418 46 1 10.2580 1.2596 5.9075 47 1 8.9422 3.6703 4.5733 48 1 8.2508 2.0346 4.7014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724372978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:09 Heat of formation + Delta-G solvation = -3.318114 kcal Electronic energy + Delta-G solvation = -29631.081723 eV Core-core repulsion = 25529.465377 eV Total energy + Delta-G solvation = -4101.616346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.19874 -41.07358 -40.13616 -37.31378 -36.07893 -35.06047 -34.41194 -33.79346 -31.95286 -31.27636 -30.91834 -28.79728 -28.25218 -26.04171 -25.66569 -24.38182 -23.33372 -22.99819 -21.92506 -21.05251 -20.08853 -19.09260 -18.29871 -17.81318 -17.50318 -17.15429 -16.95737 -16.73829 -16.56963 -16.18766 -15.90249 -15.68561 -15.47138 -15.31483 -14.84539 -14.69443 -14.18288 -14.05523 -13.97021 -13.68017 -13.47105 -13.43247 -13.19807 -13.05504 -12.90473 -12.80846 -12.66941 -12.56761 -12.26141 -12.26079 -12.09140 -11.74157 -11.62595 -11.39023 -11.11948 -11.01455 -10.97478 -10.78145 -10.30725 -10.10926 -9.84962 -8.96172 -7.90496 -5.16418 0.66861 1.45772 1.48278 1.49074 1.51811 1.61509 1.76484 2.43149 2.57957 3.09044 3.38979 3.43107 3.75463 3.77943 3.89180 3.91376 4.02290 4.08447 4.17583 4.18138 4.25747 4.29503 4.36483 4.42894 4.49981 4.62541 4.65612 4.67559 4.79053 4.81259 4.83308 4.85858 4.91351 5.04412 5.06852 5.12450 5.16956 5.24011 5.26225 5.31005 5.36530 5.60664 5.67385 5.72492 6.31496 6.38278 6.71997 7.37192 7.40993 7.52955 8.10516 8.36752 9.31472 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.002830 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.755210 B = 9891.945568 C =11261.894549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.027 4.027 4 C -0.039 4.039 5 C -0.006 4.006 6 C -0.124 4.124 7 C 0.510 3.490 8 O -0.588 6.588 9 N -0.701 5.701 10 C 0.126 3.874 11 C 0.185 3.815 12 N -0.712 5.712 13 C -0.212 4.212 14 H 0.065 0.935 15 C -0.061 4.061 16 N -0.959 5.959 17 Si 0.948 3.052 18 H -0.300 1.300 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.149 4.149 22 C 0.075 3.925 23 O -0.397 6.397 24 C 0.064 3.936 25 C -0.141 4.141 26 N -0.310 5.310 27 N -0.127 5.127 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.238 0.762 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.406 0.594 37 H 0.068 0.932 38 H 0.033 0.967 39 H 0.377 0.623 40 H 0.247 0.753 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.034 0.966 45 H 0.112 0.888 46 H 0.035 0.965 47 H 0.090 0.910 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.685 11.972 -0.772 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.083 5.083 3 C -0.179 4.179 4 C -0.178 4.178 5 C -0.045 4.045 6 C -0.164 4.164 7 C 0.298 3.702 8 O -0.470 6.470 9 N -0.351 5.351 10 C -0.001 4.001 11 C 0.095 3.905 12 N -0.353 5.353 13 C -0.345 4.345 14 H 0.083 0.917 15 C -0.254 4.254 16 N -0.610 5.610 17 Si 0.779 3.221 18 H -0.226 1.226 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.189 4.189 22 C -0.001 4.001 23 O -0.316 6.316 24 C -0.013 4.013 25 C -0.179 4.179 26 N -0.176 5.176 27 N -0.106 5.106 28 H 0.126 0.874 29 H 0.151 0.849 30 H 0.122 0.878 31 H 0.254 0.746 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.242 0.758 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.210 0.790 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.052 0.948 45 H 0.130 0.870 46 H 0.054 0.946 47 H 0.108 0.892 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.409 11.078 -1.373 23.262 hybrid contribution 0.620 -0.837 -0.648 1.226 sum -19.789 10.242 -2.021 22.374 Atomic orbital electron populations 1.22746 0.69714 1.07770 1.06720 1.47709 1.11074 1.04274 1.45228 1.24028 0.89531 0.96295 1.08012 1.22231 0.96730 0.90826 1.08014 1.19486 0.89064 0.98258 0.97718 1.21503 0.93062 1.00029 1.01791 1.21012 0.85503 0.83261 0.80470 1.90628 1.80315 1.37846 1.38228 1.45808 1.19117 1.39975 1.30176 1.21639 0.85507 0.93986 0.98938 1.20051 0.92988 0.84585 0.92913 1.42491 1.64859 1.02164 1.25780 1.19150 1.25255 0.92538 0.97510 0.91715 1.25192 1.03189 0.97853 0.99126 1.69741 1.53249 1.07986 1.30032 0.85605 0.79268 0.77382 0.79833 1.22622 1.21759 1.20821 1.22449 0.97737 1.00164 0.98584 1.22391 0.93927 0.99274 0.84546 1.87792 1.33463 1.64247 1.46138 1.22584 0.84489 0.95804 0.98400 1.22291 0.98861 1.02862 0.93894 1.75034 1.10517 1.14065 1.18010 1.78242 0.96573 1.13836 1.21911 0.87370 0.84875 0.87822 0.74611 0.87442 0.91511 0.89639 0.86930 0.75833 0.91338 0.94860 0.78959 0.94369 0.92172 0.90250 0.88373 0.94805 0.87001 0.94639 0.89180 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 11.39 127.77 1.46 1.73 16 2 N -0.29 -4.72 3.74 -369.25 -1.38 -6.10 16 3 C -0.03 -0.40 11.54 83.49 0.96 0.56 16 4 C -0.04 -0.92 6.50 41.60 0.27 -0.65 16 5 C -0.01 -0.14 5.08 29.85 0.15 0.02 16 6 C -0.12 -3.25 5.68 29.85 0.17 -3.09 16 7 C 0.51 16.66 7.83 87.66 0.69 17.34 16 8 O -0.59 -22.57 15.98 -3.02 -0.05 -22.62 16 9 N -0.70 -23.10 5.13 -463.06 -2.38 -25.47 16 10 C 0.13 4.36 4.37 86.38 0.38 4.74 16 11 C 0.19 6.34 0.41 3.72 0.00 6.35 16 12 N -0.71 -30.69 3.61 -302.81 -1.09 -31.79 16 13 C -0.21 -10.74 8.67 84.04 0.73 -10.01 16 14 H 0.06 3.31 6.78 -2.91 -0.02 3.29 16 15 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 16 N -0.96 -55.47 13.07 21.65 0.28 -55.19 16 17 Si 0.95 46.09 29.55 68.60 2.03 48.12 16 18 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 19 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 C -0.15 -4.99 4.80 30.75 0.15 -4.84 16 22 C 0.08 2.57 6.68 72.08 0.48 3.06 16 23 O -0.40 -13.14 10.77 -148.98 -1.60 -14.74 16 24 C 0.06 1.89 6.67 72.01 0.48 2.37 16 25 C -0.14 -3.93 4.80 30.68 0.15 -3.79 16 26 N -0.31 -9.54 12.40 -48.60 -0.60 -10.15 16 27 N -0.13 -3.39 13.17 37.02 0.49 -2.90 16 28 H 0.11 0.11 8.14 -2.39 -0.02 0.10 16 29 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.24 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.11 2.07 8.08 -2.39 -0.02 2.05 16 33 H 0.07 1.87 8.10 -2.39 -0.02 1.85 16 34 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.41 13.06 7.42 -92.71 -0.69 12.37 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.03 1.36 7.47 -2.38 -0.02 1.34 16 39 H 0.38 17.58 6.81 -92.70 -0.63 16.95 16 40 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.06 2.21 7.19 -2.39 -0.02 2.20 16 42 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 44 H 0.03 1.40 7.75 -2.39 -0.02 1.38 16 45 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.04 1.24 7.14 -2.39 -0.02 1.22 16 47 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.08 2.10 7.37 -2.39 -0.02 2.08 16 Total: -1.00 -75.64 390.55 1.89 -73.76 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: -0.33 Total: 36.13 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 6.53 Total: 10.95 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -4.68 Total: -131.60 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.65 Total: -37.36 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.64 1.89 -73.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724372978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.439 kcal (2) G-P(sol) polarization free energy of solvation -75.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds