Wall clock time and date at job start Tue Mar 31 2020 21:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35499 * 126.98028 * 2 1 4 4 N 1.30520 * 107.31041 * 179.83337 * 3 2 1 5 5 N 1.28601 * 109.66990 * 0.44192 * 4 3 2 6 6 C 1.30517 * 109.67469 * 359.71954 * 5 4 3 7 7 C 1.50697 * 126.34867 * 179.97438 * 6 5 4 8 8 O 1.42906 * 109.46956 * 270.03851 * 7 6 5 9 9 C 1.42900 * 114.00143 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47188 * 180.02562 * 9 8 7 11 11 O 1.21289 * 120.00286 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00353 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00459 * 179.97438 * 12 10 9 14 14 H 1.08997 * 108.44605 * 325.00432 * 13 12 10 15 15 C 1.52570 * 108.51442 * 207.31130 * 13 12 10 16 16 C 1.51033 * 109.27465 * 153.60356 * 15 13 12 17 17 C 1.53958 * 109.96611 * 92.06917 * 16 15 13 18 18 N 1.47601 * 112.13957 * 319.41895 * 17 16 15 19 19 C 1.36942 * 118.64243 * 137.89065 * 18 17 16 20 20 H 1.07999 * 119.99848 * 206.45684 * 19 18 17 21 21 C 1.38813 * 119.99628 * 26.46061 * 19 18 17 22 22 N 1.31612 * 120.00632 * 15.66881 * 21 19 18 23 23 Si 1.86797 * 119.99616 * 195.66612 * 21 19 18 24 24 H 1.48503 * 109.47276 * 90.00090 * 23 21 19 25 25 H 1.48497 * 109.47605 * 209.99896 * 23 21 19 26 26 H 1.48504 * 109.47547 * 330.00328 * 23 21 19 27 27 C 1.44579 * 122.71567 * 317.86217 * 18 17 16 28 28 C 1.47095 * 108.50806 * 82.69512 * 13 12 10 29 29 H 1.09002 * 109.46957 * 269.68432 * 1 2 3 30 30 H 1.09001 * 109.46924 * 149.68496 * 1 2 3 31 31 H 1.08999 * 109.47531 * 29.68765 * 1 2 3 32 32 H 1.08001 * 126.34440 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47092 * 30.03509 * 7 6 5 34 34 H 1.09003 * 109.47361 * 150.04031 * 7 6 5 35 35 H 1.09003 * 109.47047 * 300.00429 * 9 8 7 36 36 H 1.09001 * 109.47048 * 60.00008 * 9 8 7 37 37 H 0.97010 * 119.99803 * 0.02562 * 12 10 9 38 38 H 1.08993 * 109.49093 * 273.70254 * 15 13 12 39 39 H 1.09003 * 109.48872 * 33.77541 * 15 13 12 40 40 H 1.08992 * 109.44609 * 331.90930 * 16 15 13 41 41 H 1.09001 * 109.31357 * 212.14528 * 16 15 13 42 42 H 1.08998 * 108.94566 * 198.73335 * 17 16 15 43 43 H 1.09001 * 108.87609 * 80.05580 * 17 16 15 44 44 H 0.96997 * 120.00809 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.45159 * 330.69295 * 27 18 17 46 46 H 1.08995 * 109.45346 * 210.76856 * 27 18 17 47 47 H 1.09005 * 109.32690 * 304.31385 * 28 13 12 48 48 H 1.09004 * 109.33107 * 63.79585 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6431 0.0036 5 7 3.5091 -0.6429 -0.0035 6 6 2.2801 -1.0823 -0.0059 7 6 1.8478 -2.5259 -0.0144 8 8 1.7118 -2.9745 -1.3644 9 6 1.3037 -4.3386 -1.4854 10 6 1.1936 -4.7026 -2.9436 11 8 1.4407 -3.8754 -3.7955 12 7 0.8215 -5.9476 -3.3012 13 6 0.7138 -6.3013 -4.7188 14 1 0.3544 -5.4295 -5.2654 15 6 -0.3132 -7.4204 -4.8622 16 6 -0.9191 -7.3669 -6.2446 17 6 -0.1262 -8.2755 -7.2017 18 7 1.3298 -8.1836 -6.9776 19 6 2.0708 -9.3350 -6.9970 20 1 2.9965 -9.3908 -6.4435 21 6 1.6322 -10.4305 -7.7281 22 7 0.6918 -10.2815 -8.6368 23 14 2.3768 -12.1161 -7.4224 24 1 1.5970 -12.8187 -6.3719 25 1 2.3413 -12.9082 -8.6780 26 1 3.7841 -11.9618 -6.9742 27 6 2.0060 -6.9282 -6.7391 28 6 2.0543 -6.6453 -5.2173 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3634 0.8927 -0.5090 32 1 1.9701 2.1170 -0.0004 33 1 2.5959 -3.1323 0.4963 34 1 0.8907 -2.6216 0.4983 35 1 2.0408 -4.9823 -1.0052 36 1 0.3355 -4.4723 -1.0030 37 1 0.6241 -6.6094 -2.6198 38 1 0.1752 -8.3834 -4.7134 39 1 -1.0982 -7.2913 -4.1171 40 1 -0.8912 -6.3416 -6.6135 41 1 -1.9538 -7.7063 -6.1981 42 1 -0.3453 -7.9843 -8.2290 43 1 -0.4430 -9.3076 -7.0516 44 1 0.3855 -11.0468 -9.1479 45 1 1.4669 -6.1246 -7.2407 46 1 3.0217 -6.9829 -7.1305 47 1 2.7343 -5.8150 -5.0261 48 1 2.4163 -7.5320 -4.6968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724846052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:09 Heat of formation + Delta-G solvation = 32.818377 kcal Electronic energy + Delta-G solvation = -29113.897424 eV Core-core repulsion = 25013.848074 eV Total energy + Delta-G solvation = -4100.049350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.47278 -40.04714 -38.38530 -37.32414 -35.45383 -34.79470 -32.57900 -32.03253 -31.62085 -30.31537 -28.53854 -28.03974 -26.58902 -25.85627 -23.97580 -23.17469 -22.77374 -21.42697 -20.55577 -20.14605 -19.21967 -17.85920 -17.48095 -17.06305 -16.75099 -16.65795 -16.33795 -15.61730 -15.48343 -15.21166 -15.02168 -14.45958 -14.04096 -13.92276 -13.87069 -13.57545 -13.40276 -13.28857 -12.89949 -12.67430 -12.37976 -12.33889 -11.96373 -11.84499 -11.41749 -11.24964 -10.84990 -10.74734 -10.71651 -10.61110 -10.44877 -10.27930 -10.23797 -10.10954 -9.92389 -9.76630 -9.74994 -9.63172 -9.51430 -8.85849 -8.39469 -6.65488 -5.77101 -3.20752 1.24606 2.01829 2.40743 2.65472 2.88155 3.36623 3.44354 3.45432 3.60403 4.03064 4.15059 4.19050 4.37676 4.49492 4.50477 4.58570 4.72651 4.76713 4.82748 4.89098 5.13119 5.17159 5.34545 5.42490 5.44692 5.61266 5.69805 5.70750 6.01139 6.05890 6.18283 6.29450 6.36464 6.44497 6.48011 6.50123 6.65544 6.75323 6.81071 6.83727 6.92261 7.05827 7.43331 7.60686 7.71305 7.83734 8.30577 8.36253 8.48377 9.25520 9.92365 10.37627 11.30251 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.001945 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.822195 B =14394.861009 C =14716.207074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.469 5.469 3 C 0.155 3.845 4 N -0.296 5.296 5 N -0.270 5.270 6 C 0.175 3.825 7 C 0.149 3.851 8 O -0.356 6.356 9 C 0.044 3.956 10 C 0.509 3.491 11 O -0.520 6.520 12 N -0.726 5.726 13 C 0.164 3.836 14 H 0.073 0.927 15 C -0.111 4.111 16 C -0.141 4.141 17 C 0.177 3.823 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.904 5.904 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.162 3.838 28 C -0.156 4.156 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.222 0.778 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.396 0.604 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.025 0.975 43 H 0.075 0.925 44 H 0.253 0.747 45 H 0.034 0.966 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.393 16.253 21.265 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.160 5.160 3 C -0.132 4.132 4 N -0.136 5.136 5 N -0.112 5.112 6 C -0.092 4.092 7 C 0.070 3.930 8 O -0.273 6.273 9 C -0.036 4.036 10 C 0.293 3.707 11 O -0.394 6.394 12 N -0.378 5.378 13 C 0.062 3.938 14 H 0.091 0.909 15 C -0.149 4.149 16 C -0.181 4.181 17 C 0.052 3.948 18 N -0.312 5.312 19 C -0.386 4.386 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.549 5.549 23 Si 0.731 3.269 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.033 3.967 28 C -0.197 4.197 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.238 0.762 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.229 0.771 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.789 16.871 20.326 27.042 hybrid contribution -1.339 -1.268 0.716 1.978 sum -7.128 15.603 21.041 27.148 Atomic orbital electron populations 1.22188 0.74999 1.05995 1.04160 1.46186 1.09447 1.06699 1.53687 1.26522 0.87180 0.94970 1.04505 1.74312 1.18096 1.03076 1.18108 1.74288 1.16901 1.03306 1.16720 1.24271 0.87448 0.91392 1.06124 1.20499 1.01005 0.86126 0.85342 1.88104 1.89347 1.25942 1.23858 1.22312 1.01025 0.84301 0.95964 1.20056 0.77884 0.82788 0.89935 1.90756 1.47664 1.49064 1.51960 1.46402 1.69670 1.11857 1.09896 1.20053 0.96959 0.97976 0.78837 0.90869 1.21275 0.96627 0.99316 0.97651 1.22015 0.99288 1.00915 0.95834 1.21023 0.81708 0.98130 0.93904 1.43692 1.02456 1.01919 1.83143 1.19222 1.05425 0.90423 1.23539 0.91695 1.25034 0.99265 0.99137 0.96086 1.70066 1.32322 1.29330 1.23169 0.86320 0.78901 0.84618 0.77105 1.21565 1.21835 1.20483 1.20566 0.96664 0.88600 0.90847 1.21877 0.95524 1.00668 1.01630 0.89718 0.88683 0.88568 0.76211 0.89048 0.91061 0.89675 0.90153 0.77082 0.89988 0.93208 0.93385 0.92531 0.95695 0.90694 0.93714 0.94799 0.93259 0.92784 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 10.89 59.84 0.65 0.86 16 2 N -0.47 -3.66 3.15 -122.69 -0.39 -4.05 16 3 C 0.16 1.31 12.74 -89.94 -1.15 0.17 16 4 N -0.30 -3.88 12.21 29.69 0.36 -3.52 16 5 N -0.27 -3.82 12.21 32.80 0.40 -3.42 16 6 C 0.17 1.87 7.66 -154.98 -1.19 0.69 16 7 C 0.15 1.18 6.11 36.00 0.22 1.40 16 8 O -0.36 -4.11 9.86 -55.14 -0.54 -4.66 16 9 C 0.04 0.39 6.42 36.00 0.23 0.62 16 10 C 0.51 6.99 7.69 -10.99 -0.08 6.91 16 11 O -0.52 -9.86 15.81 -14.36 -0.23 -10.08 16 12 N -0.73 -9.15 4.91 -56.81 -0.28 -9.43 16 13 C 0.16 2.65 1.94 -70.98 -0.14 2.51 16 14 H 0.07 1.32 6.73 -51.93 -0.35 0.97 16 15 C -0.11 -1.76 4.98 -27.94 -0.14 -1.90 16 16 C -0.14 -2.52 5.72 -27.22 -0.16 -2.68 16 17 C 0.18 4.08 4.66 -2.94 -0.01 4.06 16 18 N -0.59 -14.23 2.27 -172.09 -0.39 -14.62 16 19 C -0.26 -6.81 9.44 -15.06 -0.14 -6.95 16 20 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 21 C 0.00 0.09 4.87 -17.43 -0.08 0.00 16 22 N -0.90 -25.73 11.01 55.49 0.61 -25.12 16 23 Si 0.90 21.36 29.58 -169.99 -5.03 16.33 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.16 3.45 5.66 -4.08 -0.02 3.43 16 28 C -0.16 -2.85 5.17 -28.58 -0.15 -3.00 16 29 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 30 H 0.09 0.31 7.81 -51.93 -0.41 -0.10 16 31 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.22 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.30 7.85 -51.93 -0.41 -0.11 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.40 3.66 8.59 -40.82 -0.35 3.31 16 38 H 0.08 1.49 7.48 -51.93 -0.39 1.10 16 39 H 0.05 0.66 8.05 -51.93 -0.42 0.24 16 40 H 0.05 0.84 7.31 -51.93 -0.38 0.46 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 43 H 0.07 1.91 6.33 -51.93 -0.33 1.58 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 46 H 0.05 1.08 7.99 -51.93 -0.41 0.67 16 47 H 0.05 1.01 7.67 -51.93 -0.40 0.62 16 48 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 389.43 15.07 5.87 5.87 Total: -1.00 -37.89 389.43 -9.38 -47.27 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.61 Total: -0.69 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.16 Total: 6.12 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.32 Total: -60.15 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.77 Total: -14.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.89 -9.38 -47.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724846052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.085 kcal (2) G-P(sol) polarization free energy of solvation -37.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds