Wall clock time and date at job start Tue Mar 31 2020 21:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35499 * 126.98028 * 2 1 4 4 N 1.30520 * 107.31041 * 179.83337 * 3 2 1 5 5 N 1.28601 * 109.66990 * 0.44192 * 4 3 2 6 6 C 1.30517 * 109.67469 * 359.71954 * 5 4 3 7 7 C 1.50697 * 126.34867 * 179.97438 * 6 5 4 8 8 O 1.42906 * 109.46956 * 270.03851 * 7 6 5 9 9 C 1.42900 * 114.00143 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47188 * 180.02562 * 9 8 7 11 11 O 1.21289 * 120.00286 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00353 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00459 * 179.97438 * 12 10 9 14 14 H 1.08997 * 108.44605 * 325.00432 * 13 12 10 15 15 C 1.52570 * 108.51442 * 207.31130 * 13 12 10 16 16 C 1.51033 * 109.27465 * 153.60356 * 15 13 12 17 17 C 1.53958 * 109.96611 * 92.06917 * 16 15 13 18 18 N 1.47601 * 112.13957 * 319.41895 * 17 16 15 19 19 C 1.36942 * 118.64243 * 137.89065 * 18 17 16 20 20 H 1.07999 * 119.99848 * 206.45684 * 19 18 17 21 21 C 1.38813 * 119.99628 * 26.46061 * 19 18 17 22 22 N 1.31612 * 120.00632 * 15.66881 * 21 19 18 23 23 Si 1.86797 * 119.99616 * 195.66612 * 21 19 18 24 24 H 1.48503 * 109.47276 * 90.00090 * 23 21 19 25 25 H 1.48497 * 109.47605 * 209.99896 * 23 21 19 26 26 H 1.48504 * 109.47547 * 330.00328 * 23 21 19 27 27 C 1.44579 * 122.71567 * 317.86217 * 18 17 16 28 28 C 1.47095 * 108.50806 * 82.69512 * 13 12 10 29 29 H 1.09002 * 109.46957 * 269.68432 * 1 2 3 30 30 H 1.09001 * 109.46924 * 149.68496 * 1 2 3 31 31 H 1.08999 * 109.47531 * 29.68765 * 1 2 3 32 32 H 1.08001 * 126.34440 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47092 * 30.03509 * 7 6 5 34 34 H 1.09003 * 109.47361 * 150.04031 * 7 6 5 35 35 H 1.09003 * 109.47047 * 300.00429 * 9 8 7 36 36 H 1.09001 * 109.47048 * 60.00008 * 9 8 7 37 37 H 0.97010 * 119.99803 * 0.02562 * 12 10 9 38 38 H 1.08993 * 109.49093 * 273.70254 * 15 13 12 39 39 H 1.09003 * 109.48872 * 33.77541 * 15 13 12 40 40 H 1.08992 * 109.44609 * 331.90930 * 16 15 13 41 41 H 1.09001 * 109.31357 * 212.14528 * 16 15 13 42 42 H 1.08998 * 108.94566 * 198.73335 * 17 16 15 43 43 H 1.09001 * 108.87609 * 80.05580 * 17 16 15 44 44 H 0.96997 * 120.00809 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.45159 * 330.69295 * 27 18 17 46 46 H 1.08995 * 109.45346 * 210.76856 * 27 18 17 47 47 H 1.09005 * 109.32690 * 304.31385 * 28 13 12 48 48 H 1.09004 * 109.33107 * 63.79585 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6431 0.0036 5 7 3.5091 -0.6429 -0.0035 6 6 2.2801 -1.0823 -0.0059 7 6 1.8478 -2.5259 -0.0144 8 8 1.7118 -2.9745 -1.3644 9 6 1.3037 -4.3386 -1.4854 10 6 1.1936 -4.7026 -2.9436 11 8 1.4407 -3.8754 -3.7955 12 7 0.8215 -5.9476 -3.3012 13 6 0.7138 -6.3013 -4.7188 14 1 0.3544 -5.4295 -5.2654 15 6 -0.3132 -7.4204 -4.8622 16 6 -0.9191 -7.3669 -6.2446 17 6 -0.1262 -8.2755 -7.2017 18 7 1.3298 -8.1836 -6.9776 19 6 2.0708 -9.3350 -6.9970 20 1 2.9965 -9.3908 -6.4435 21 6 1.6322 -10.4305 -7.7281 22 7 0.6918 -10.2815 -8.6368 23 14 2.3768 -12.1161 -7.4224 24 1 1.5970 -12.8187 -6.3719 25 1 2.3413 -12.9082 -8.6780 26 1 3.7841 -11.9618 -6.9742 27 6 2.0060 -6.9282 -6.7391 28 6 2.0543 -6.6453 -5.2173 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3634 0.8927 -0.5090 32 1 1.9701 2.1170 -0.0004 33 1 2.5959 -3.1323 0.4963 34 1 0.8907 -2.6216 0.4983 35 1 2.0408 -4.9823 -1.0052 36 1 0.3355 -4.4723 -1.0030 37 1 0.6241 -6.6094 -2.6198 38 1 0.1752 -8.3834 -4.7134 39 1 -1.0982 -7.2913 -4.1171 40 1 -0.8912 -6.3416 -6.6135 41 1 -1.9538 -7.7063 -6.1981 42 1 -0.3453 -7.9843 -8.2290 43 1 -0.4430 -9.3076 -7.0516 44 1 0.3855 -11.0468 -9.1479 45 1 1.4669 -6.1246 -7.2407 46 1 3.0217 -6.9829 -7.1305 47 1 2.7343 -5.8150 -5.0261 48 1 2.4163 -7.5320 -4.6968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724846052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:08 Heat of formation + Delta-G solvation = 7.267399 kcal Electronic energy + Delta-G solvation = -29115.005398 eV Core-core repulsion = 25013.848074 eV Total energy + Delta-G solvation = -4101.157323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.14056 -41.18277 -39.48732 -38.49883 -36.34897 -36.01106 -34.13621 -33.32093 -32.75967 -31.88165 -29.38728 -28.50814 -27.83357 -27.03968 -25.64795 -24.83037 -23.41273 -22.07560 -21.71498 -21.53838 -20.91694 -18.61216 -18.56572 -18.13520 -17.83975 -17.37236 -17.24092 -16.97109 -16.58772 -16.20489 -15.98656 -15.72817 -15.43204 -15.28160 -15.17218 -14.65990 -14.30628 -14.27377 -14.13621 -13.66776 -13.59795 -13.22922 -13.13872 -13.02455 -12.99472 -12.70991 -12.59033 -12.40293 -12.10437 -12.03496 -11.73973 -11.53237 -11.50131 -11.44779 -11.33940 -11.13850 -10.83955 -10.81128 -10.45569 -10.41630 -10.06862 -8.64915 -7.83371 -5.30046 0.62227 1.48112 1.49282 1.52192 1.58045 1.64240 1.70231 2.02482 2.53418 2.91745 3.29887 3.46450 3.64812 3.66714 3.75492 3.85122 3.86656 3.97706 4.12010 4.19813 4.25996 4.33374 4.35840 4.40232 4.44890 4.45990 4.59529 4.68794 4.69596 4.77490 4.86302 4.97495 5.00376 5.09432 5.12868 5.16132 5.25498 5.34067 5.50224 5.57058 5.60777 5.69994 5.83575 5.85311 5.93784 6.42810 6.64829 7.20743 7.32417 7.64619 7.95911 8.35574 9.21762 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.001945 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.822195 B =14394.861009 C =14716.207074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.466 5.466 3 C 0.167 3.833 4 N -0.353 5.353 5 N -0.328 5.328 6 C 0.165 3.835 7 C 0.150 3.850 8 O -0.396 6.396 9 C 0.051 3.949 10 C 0.504 3.496 11 O -0.581 6.581 12 N -0.711 5.711 13 C 0.171 3.829 14 H 0.056 0.944 15 C -0.099 4.099 16 C -0.130 4.130 17 C 0.186 3.814 18 N -0.601 5.601 19 C -0.261 4.261 20 H 0.064 0.936 21 C -0.048 4.048 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.281 1.281 25 H -0.299 1.299 26 H -0.273 1.273 27 C 0.159 3.841 28 C -0.136 4.136 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.265 0.735 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.417 0.583 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.079 0.921 42 H -0.011 1.011 43 H 0.047 0.953 44 H 0.249 0.751 45 H 0.033 0.967 46 H 0.034 0.966 47 H 0.047 0.953 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.389 16.429 24.484 30.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.156 5.156 3 C -0.121 4.121 4 N -0.193 5.193 5 N -0.170 5.170 6 C -0.105 4.105 7 C 0.071 3.929 8 O -0.314 6.314 9 C -0.028 4.028 10 C 0.291 3.709 11 O -0.460 6.460 12 N -0.364 5.364 13 C 0.067 3.933 14 H 0.074 0.926 15 C -0.137 4.137 16 C -0.170 4.170 17 C 0.061 3.939 18 N -0.323 5.323 19 C -0.392 4.392 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.582 5.582 23 Si 0.793 3.207 24 H -0.208 1.208 25 H -0.226 1.226 26 H -0.197 1.197 27 C 0.031 3.969 28 C -0.177 4.177 29 H 0.130 0.870 30 H 0.114 0.886 31 H 0.134 0.866 32 H 0.280 0.720 33 H 0.117 0.883 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.147 0.853 37 H 0.254 0.746 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.007 0.993 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.800 17.039 23.612 30.144 hybrid contribution -0.741 -1.227 -0.329 1.470 sum -8.541 15.812 23.283 29.412 Atomic orbital electron populations 1.22575 0.72046 1.07070 1.06248 1.46479 1.11082 1.05638 1.52389 1.27330 0.86183 0.96758 1.01831 1.74165 1.21015 1.03219 1.20857 1.74144 1.19532 1.04168 1.19146 1.24801 0.87192 0.93215 1.05258 1.20779 1.03491 0.84481 0.84104 1.88034 1.89964 1.27245 1.26128 1.22407 1.04411 0.83763 0.92215 1.21006 0.76086 0.81989 0.91839 1.90736 1.50287 1.50787 1.54158 1.46107 1.69155 1.12427 1.08754 1.19683 0.95403 0.97294 0.80960 0.92616 1.21150 0.97306 0.97959 0.97287 1.21873 0.99685 0.99666 0.95738 1.20828 0.81777 0.97687 0.93589 1.43864 1.03008 1.02149 1.83313 1.19474 1.05492 0.91344 1.22849 0.91858 1.25753 1.00116 1.02385 0.96126 1.70231 1.33844 1.29845 1.24265 0.85312 0.78446 0.80363 0.76578 1.20774 1.22558 1.19746 1.20642 0.95553 0.87602 0.93124 1.21602 0.97127 1.00021 0.98936 0.87040 0.88601 0.86609 0.71968 0.88279 0.86596 0.86954 0.85314 0.74584 0.91880 0.89132 0.93053 0.90194 0.99258 0.93451 0.94222 0.94876 0.94717 0.93433 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.15 10.89 127.77 1.39 1.54 16 2 N -0.47 -6.30 3.15 -542.08 -1.71 -8.01 16 3 C 0.17 2.60 12.74 180.11 2.30 4.90 16 4 N -0.35 -9.44 12.21 -59.99 -0.73 -10.18 16 5 N -0.33 -9.49 12.21 -50.15 -0.61 -10.10 16 6 C 0.16 3.34 7.66 137.98 1.06 4.40 16 7 C 0.15 1.96 6.11 71.23 0.44 2.40 16 8 O -0.40 -8.23 9.86 -129.94 -1.28 -9.51 16 9 C 0.05 0.71 6.42 71.23 0.46 1.17 16 10 C 0.50 12.68 7.69 87.66 0.67 13.36 16 11 O -0.58 -21.83 15.81 15.98 0.25 -21.57 16 12 N -0.71 -15.85 4.91 -452.05 -2.22 -18.08 16 13 C 0.17 5.24 1.94 43.01 0.08 5.32 16 14 H 0.06 1.96 6.73 -2.39 -0.02 1.95 16 15 C -0.10 -2.92 4.98 29.81 0.15 -2.77 16 16 C -0.13 -4.51 5.72 30.28 0.17 -4.34 16 17 C 0.19 8.76 4.66 86.49 0.40 9.16 16 18 N -0.60 -29.61 2.27 -698.36 -1.58 -31.19 16 19 C -0.26 -14.10 9.44 84.03 0.79 -13.30 16 20 H 0.06 3.38 7.88 -2.91 -0.02 3.35 16 21 C -0.05 -2.67 4.87 84.86 0.41 -2.26 16 22 N -0.94 -54.73 11.01 21.65 0.24 -54.49 16 23 Si 0.96 44.34 29.58 68.60 2.03 46.37 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 C 0.16 6.92 5.66 87.38 0.49 7.41 16 28 C -0.14 -4.95 5.17 29.40 0.15 -4.80 16 29 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.10 0.28 7.81 -2.39 -0.02 0.26 16 31 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.26 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.12 0.42 7.85 -2.39 -0.02 0.40 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.42 5.92 8.59 -92.70 -0.80 5.12 16 38 H 0.06 2.16 7.48 -2.39 -0.02 2.14 16 39 H 0.09 1.98 8.05 -2.39 -0.02 1.96 16 40 H 0.05 1.75 7.31 -2.39 -0.02 1.74 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H -0.01 -0.57 8.03 -2.39 -0.02 -0.59 16 43 H 0.05 2.47 6.33 -2.39 -0.02 2.46 16 44 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 45 H 0.03 1.43 8.06 -2.39 -0.02 1.41 16 46 H 0.03 1.57 7.99 -2.39 -0.02 1.56 16 47 H 0.05 1.79 7.67 -2.38 -0.02 1.77 16 48 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -89.91 389.43 3.53 -86.38 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.17 Total: 8.18 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 8.97 Total: 22.19 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -6.62 Total: -132.04 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.03 Total: -31.09 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -89.91 3.53 -86.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724846052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.650 kcal (2) G-P(sol) polarization free energy of solvation -89.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds