Wall clock time and date at job start Tue Mar 31 2020 21:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99938 * 2 1 4 4 C 1.53001 * 109.47063 * 66.04385 * 3 2 1 5 5 C 1.53000 * 109.46815 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.46819 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00262 * 269.99813 * 6 5 4 8 8 C 1.34781 * 119.99530 * 90.00354 * 6 5 4 9 9 O 1.21680 * 120.00433 * 7.87474 * 8 6 5 10 10 C 1.46771 * 119.99583 * 187.87313 * 8 6 5 11 11 C 1.36663 * 126.84802 * 353.81155 * 10 8 6 12 12 N 1.33313 * 107.78711 * 180.22553 * 11 10 8 13 13 C 1.30860 * 109.68503 * 359.77096 * 12 11 10 14 14 N 1.34501 * 109.16156 * 0.02562 * 13 12 11 15 15 C 1.46494 * 126.46874 * 179.97438 * 14 13 12 16 16 C 1.46898 * 111.00177 * 236.04120 * 2 1 3 17 17 C 1.50696 * 109.47224 * 293.95966 * 16 2 1 18 18 O 1.21289 * 120.00277 * 359.97438 * 17 16 2 19 19 N 1.34780 * 119.99965 * 180.02562 * 17 16 2 20 20 C 1.37094 * 120.00069 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00001 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99959 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00115 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99920 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47124 * 59.99763 * 24 22 20 26 26 H 1.48500 * 109.47076 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47221 * 299.99286 * 24 22 20 28 28 H 1.09004 * 109.46758 * 59.99855 * 1 2 3 29 29 H 1.09001 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47560 * 300.00253 * 1 2 3 31 31 H 1.08995 * 109.46916 * 306.04381 * 3 2 1 32 32 H 1.09004 * 109.46916 * 186.04175 * 3 2 1 33 33 H 1.09001 * 109.47057 * 59.99836 * 4 3 2 34 34 H 1.08994 * 109.46917 * 299.99731 * 4 3 2 35 35 H 1.09001 * 109.47213 * 60.00211 * 5 4 3 36 36 H 1.08994 * 109.47386 * 299.99723 * 5 4 3 37 37 H 1.09000 * 109.47468 * 246.82465 * 7 6 5 38 38 H 1.09001 * 109.46850 * 6.82948 * 7 6 5 39 39 H 1.09000 * 109.46511 * 126.82665 * 7 6 5 40 40 H 1.08001 * 126.10284 * 359.97438 * 11 10 8 41 41 H 1.07997 * 125.41763 * 180.02562 * 13 12 11 42 42 H 1.09004 * 109.47525 * 88.15192 * 15 14 13 43 43 H 1.09005 * 109.47603 * 328.14852 * 15 14 13 44 44 H 1.08999 * 109.47034 * 208.14999 * 15 14 13 45 45 H 1.09006 * 109.46767 * 53.95724 * 16 2 1 46 46 H 1.08994 * 109.47023 * 173.95592 * 16 2 1 47 47 H 0.96996 * 119.99792 * 359.97438 * 19 17 16 48 48 H 0.97001 * 120.00182 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1803 3.4856 1.3185 6 7 1.8311 4.1427 2.5805 7 6 0.5747 4.8872 2.6957 8 6 2.6661 4.0623 3.6355 9 8 3.7705 3.5696 3.5013 10 6 2.2430 4.5692 4.9463 11 6 1.0922 5.2499 5.2293 12 7 1.0954 5.5311 6.5325 13 6 2.1847 5.0587 7.0827 14 7 2.9276 4.4511 6.1403 15 6 4.2208 3.7930 6.3414 16 6 1.9955 -0.7661 -1.1375 17 6 1.6369 -2.2204 -0.9727 18 8 1.0053 -2.5833 -0.0029 19 7 2.0189 -3.1182 -1.9026 20 6 1.6922 -4.4412 -1.7530 21 1 1.1291 -4.7642 -0.8898 22 6 2.0865 -5.3668 -2.7114 23 7 2.7721 -4.9740 -3.7614 24 14 1.6420 -7.1697 -2.5072 25 1 0.1648 -7.3126 -2.4566 26 1 2.1748 -7.9441 -3.6568 27 1 2.2327 -7.6854 -1.2461 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.5611 1.9273 -0.8309 32 1 3.0798 1.3444 -0.1082 33 1 2.0657 1.5015 2.1492 34 1 0.5472 2.0845 1.4264 35 1 1.7463 4.0418 0.4875 36 1 3.2645 3.4582 1.2105 37 1 0.7911 5.9481 2.8206 38 1 -0.0182 4.7411 1.7928 39 1 0.0164 4.5260 3.5594 40 1 0.3202 5.5163 4.5226 41 1 2.4456 5.1432 8.1272 42 1 4.0593 2.7505 6.6158 43 1 4.7658 4.2984 7.1387 44 1 4.7998 3.8402 5.4191 45 1 1.5612 -0.3873 -2.0628 46 1 3.0797 -0.6612 -1.1755 47 1 2.5243 -2.8281 -2.6780 48 1 3.0471 -5.6201 -4.4306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724853395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:52 Heat of formation + Delta-G solvation = 25.324550 kcal Electronic energy + Delta-G solvation = -28587.409998 eV Core-core repulsion = 24487.035692 eV Total energy + Delta-G solvation = -4100.374307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.62593 -39.85985 -38.61918 -36.93921 -36.09544 -34.30810 -33.87150 -32.56819 -31.21567 -30.15104 -28.12018 -27.74604 -27.15085 -26.44098 -24.88500 -23.51368 -22.22584 -21.71579 -20.74229 -19.79917 -19.10778 -17.81225 -17.65332 -16.92091 -16.63437 -16.38292 -15.88729 -15.49267 -15.45573 -14.83543 -14.67115 -14.58238 -14.37465 -14.26293 -13.98308 -13.62487 -13.38224 -13.33282 -13.29651 -13.25191 -13.13424 -12.36501 -12.08961 -12.01593 -11.71988 -11.63060 -11.45880 -11.21583 -11.19487 -10.88377 -10.71548 -10.56207 -10.42544 -10.19443 -10.16157 -10.07873 -9.44620 -9.09060 -8.96728 -8.41317 -7.95093 -7.80960 -6.39426 -3.80110 0.95448 2.04536 2.49121 2.79417 2.98193 3.21504 3.26880 3.31398 3.93444 4.00311 4.08425 4.20153 4.27467 4.41351 4.63307 4.65709 4.79813 4.82942 4.88961 4.97093 5.06683 5.13517 5.18417 5.19450 5.26112 5.27863 5.33516 5.46067 5.61618 5.70248 5.74499 5.76073 5.96181 5.99852 6.04162 6.06870 6.12623 6.28880 6.32802 6.59230 6.63259 6.93132 7.31753 7.44458 7.49084 7.57155 7.78635 8.08823 8.64751 9.20528 9.57225 10.09512 10.78309 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.001789 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.022682 B =15649.242711 C =16073.077361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.130 4.130 5 C 0.119 3.881 6 N -0.602 5.602 7 C 0.060 3.940 8 C 0.594 3.406 9 O -0.540 6.540 10 C -0.085 4.085 11 C 0.013 3.987 12 N -0.500 5.500 13 C 0.204 3.796 14 N -0.427 5.427 15 C 0.063 3.937 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.013 0.987 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.199 0.801 41 H 0.212 0.788 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 24.495 13.813 28.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.169 4.169 5 C -0.004 4.004 6 N -0.334 5.334 7 C -0.083 4.083 8 C 0.383 3.617 9 O -0.419 6.419 10 C -0.202 4.202 11 C -0.140 4.140 12 N -0.217 5.217 13 C -0.078 4.078 14 N -0.107 5.107 15 C -0.079 4.079 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.031 0.969 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.216 0.784 41 H 0.229 0.771 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.250 23.963 15.089 28.319 hybrid contribution 0.491 -0.799 -1.521 1.787 sum 0.241 23.164 13.568 26.846 Atomic orbital electron populations 1.22557 0.86910 1.04360 0.98764 1.61520 1.08625 1.11395 1.42762 1.22024 1.00340 0.88892 0.95756 1.21944 1.01471 0.94426 0.99065 1.21572 1.02332 0.92872 0.83585 1.47395 1.20928 1.52894 1.12194 1.22482 0.85725 0.96082 1.03982 1.16777 0.84153 0.78385 0.82404 1.90795 1.20245 1.46223 1.84596 1.20749 0.97905 1.13261 0.88298 1.23849 0.96915 0.99541 0.93734 1.70219 1.20282 1.23206 1.08038 1.25188 0.89017 0.97026 0.96569 1.45285 1.17950 1.40409 1.07029 1.22360 0.81849 0.98188 1.05528 1.21860 1.00683 0.94137 0.91837 1.19756 0.85388 0.86693 0.85197 1.90480 1.43923 1.80163 1.31603 1.41862 1.49469 1.07344 1.21504 1.19645 1.32899 0.82336 1.07921 0.87999 1.25257 0.96855 1.00546 0.95339 1.69605 1.38037 1.35826 1.10938 0.85919 0.78866 0.81737 0.77691 1.19951 1.21006 1.19908 0.96880 0.88717 0.92179 0.95116 0.90727 0.90627 0.91531 0.90107 0.89263 0.91376 0.89839 0.90085 0.78435 0.77147 0.89930 0.89325 0.87413 0.93518 0.89413 0.77501 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.96 60.07 0.54 0.90 16 2 N -0.52 -8.85 4.50 -244.37 -1.10 -9.95 16 3 C 0.06 0.74 4.96 -3.82 -0.02 0.73 16 4 C -0.13 -1.47 5.46 -26.73 -0.15 -1.62 16 5 C 0.12 1.08 5.42 -4.04 -0.02 1.06 16 6 N -0.60 -5.43 2.87 -183.09 -0.53 -5.96 16 7 C 0.06 0.32 8.63 59.85 0.52 0.84 16 8 C 0.59 6.83 7.62 -12.81 -0.10 6.74 16 9 O -0.54 -7.72 14.37 5.21 0.07 -7.65 16 10 C -0.09 -0.88 6.85 -82.14 -0.56 -1.45 16 11 C 0.01 0.12 9.91 -17.48 -0.17 -0.05 16 12 N -0.50 -5.06 11.20 -14.43 -0.16 -5.22 16 13 C 0.20 1.62 12.52 -90.57 -1.13 0.49 16 14 N -0.43 -3.82 3.17 -121.97 -0.39 -4.21 16 15 C 0.06 0.42 10.81 59.84 0.65 1.06 16 16 C 0.05 0.84 5.45 -4.98 -0.03 0.82 16 17 C 0.44 10.66 7.47 -10.99 -0.08 10.58 16 18 O -0.58 -15.79 13.91 5.55 0.08 -15.71 16 19 N -0.56 -14.50 5.29 -10.97 -0.06 -14.56 16 20 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 24 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 1.90 5.82 -51.93 -0.30 1.60 16 30 H 0.06 0.86 6.47 -51.93 -0.34 0.53 16 31 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.72 6.55 -51.93 -0.34 0.38 16 35 H 0.08 0.54 7.98 -51.93 -0.41 0.13 16 36 H 0.09 0.93 7.33 -51.93 -0.38 0.55 16 37 H 0.07 0.28 7.42 -51.93 -0.39 -0.10 16 38 H 0.08 0.32 7.86 -51.93 -0.41 -0.09 16 39 H 0.08 0.42 5.46 -51.93 -0.28 0.13 16 40 H 0.20 1.24 4.13 -52.49 -0.22 1.02 16 41 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.11 0.94 6.27 -51.93 -0.33 0.61 16 45 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 46 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -36.41 389.88 -8.31 -44.72 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.01 Total: 8.41 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -0.80 Total: 12.03 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -1.51 Total: -63.90 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.15 Total: -23.36 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.41 -8.31 -44.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724853395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.048 kcal (2) G-P(sol) polarization free energy of solvation -36.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds