Wall clock time and date at job start Tue Mar 31 2020 21:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99938 * 2 1 4 4 C 1.53001 * 109.47063 * 66.04385 * 3 2 1 5 5 C 1.53000 * 109.46815 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.46819 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00262 * 269.99813 * 6 5 4 8 8 C 1.34781 * 119.99530 * 90.00354 * 6 5 4 9 9 O 1.21680 * 120.00433 * 7.87474 * 8 6 5 10 10 C 1.46771 * 119.99583 * 187.87313 * 8 6 5 11 11 C 1.36663 * 126.84802 * 353.81155 * 10 8 6 12 12 N 1.33313 * 107.78711 * 180.22553 * 11 10 8 13 13 C 1.30860 * 109.68503 * 359.77096 * 12 11 10 14 14 N 1.34501 * 109.16156 * 0.02562 * 13 12 11 15 15 C 1.46494 * 126.46874 * 179.97438 * 14 13 12 16 16 C 1.46898 * 111.00177 * 236.04120 * 2 1 3 17 17 C 1.50696 * 109.47224 * 293.95966 * 16 2 1 18 18 O 1.21289 * 120.00277 * 359.97438 * 17 16 2 19 19 N 1.34780 * 119.99965 * 180.02562 * 17 16 2 20 20 C 1.37094 * 120.00069 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00001 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99959 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00115 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99920 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47124 * 59.99763 * 24 22 20 26 26 H 1.48500 * 109.47076 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47221 * 299.99286 * 24 22 20 28 28 H 1.09004 * 109.46758 * 59.99855 * 1 2 3 29 29 H 1.09001 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47560 * 300.00253 * 1 2 3 31 31 H 1.08995 * 109.46916 * 306.04381 * 3 2 1 32 32 H 1.09004 * 109.46916 * 186.04175 * 3 2 1 33 33 H 1.09001 * 109.47057 * 59.99836 * 4 3 2 34 34 H 1.08994 * 109.46917 * 299.99731 * 4 3 2 35 35 H 1.09001 * 109.47213 * 60.00211 * 5 4 3 36 36 H 1.08994 * 109.47386 * 299.99723 * 5 4 3 37 37 H 1.09000 * 109.47468 * 246.82465 * 7 6 5 38 38 H 1.09001 * 109.46850 * 6.82948 * 7 6 5 39 39 H 1.09000 * 109.46511 * 126.82665 * 7 6 5 40 40 H 1.08001 * 126.10284 * 359.97438 * 11 10 8 41 41 H 1.07997 * 125.41763 * 180.02562 * 13 12 11 42 42 H 1.09004 * 109.47525 * 88.15192 * 15 14 13 43 43 H 1.09005 * 109.47603 * 328.14852 * 15 14 13 44 44 H 1.08999 * 109.47034 * 208.14999 * 15 14 13 45 45 H 1.09006 * 109.46767 * 53.95724 * 16 2 1 46 46 H 1.08994 * 109.47023 * 173.95592 * 16 2 1 47 47 H 0.96996 * 119.99792 * 359.97438 * 19 17 16 48 48 H 0.97001 * 120.00182 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1803 3.4856 1.3185 6 7 1.8311 4.1427 2.5805 7 6 0.5747 4.8872 2.6957 8 6 2.6661 4.0623 3.6355 9 8 3.7705 3.5696 3.5013 10 6 2.2430 4.5692 4.9463 11 6 1.0922 5.2499 5.2293 12 7 1.0954 5.5311 6.5325 13 6 2.1847 5.0587 7.0827 14 7 2.9276 4.4511 6.1403 15 6 4.2208 3.7930 6.3414 16 6 1.9955 -0.7661 -1.1375 17 6 1.6369 -2.2204 -0.9727 18 8 1.0053 -2.5833 -0.0029 19 7 2.0189 -3.1182 -1.9026 20 6 1.6922 -4.4412 -1.7530 21 1 1.1291 -4.7642 -0.8898 22 6 2.0865 -5.3668 -2.7114 23 7 2.7721 -4.9740 -3.7614 24 14 1.6420 -7.1697 -2.5072 25 1 0.1648 -7.3126 -2.4566 26 1 2.1748 -7.9441 -3.6568 27 1 2.2327 -7.6854 -1.2461 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.5611 1.9273 -0.8309 32 1 3.0798 1.3444 -0.1082 33 1 2.0657 1.5015 2.1492 34 1 0.5472 2.0845 1.4264 35 1 1.7463 4.0418 0.4875 36 1 3.2645 3.4582 1.2105 37 1 0.7911 5.9481 2.8206 38 1 -0.0182 4.7411 1.7928 39 1 0.0164 4.5260 3.5594 40 1 0.3202 5.5163 4.5226 41 1 2.4456 5.1432 8.1272 42 1 4.0593 2.7505 6.6158 43 1 4.7658 4.2984 7.1387 44 1 4.7998 3.8402 5.4191 45 1 1.5612 -0.3873 -2.0628 46 1 3.0797 -0.6612 -1.1755 47 1 2.5243 -2.8281 -2.6780 48 1 3.0471 -5.6201 -4.4306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724853395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:50 Heat of formation + Delta-G solvation = -1.121039 kcal Electronic energy + Delta-G solvation = -28588.556765 eV Core-core repulsion = 24487.035692 eV Total energy + Delta-G solvation = -4101.521073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.27225 -40.66801 -40.33127 -38.24277 -37.01543 -35.89394 -34.94436 -33.53467 -33.24450 -30.94760 -29.37373 -28.56757 -27.79313 -27.43595 -26.59995 -24.69327 -22.99906 -22.45014 -21.77339 -20.98408 -20.48559 -19.84903 -18.31473 -17.88528 -17.58586 -17.22249 -17.06374 -16.63099 -16.59228 -16.40471 -15.90205 -15.79869 -15.39775 -15.22843 -15.01891 -14.90699 -14.68073 -14.49566 -14.01322 -13.87543 -13.74665 -13.65052 -13.48605 -13.19538 -13.00003 -12.90180 -12.71763 -12.53047 -12.42911 -12.37854 -12.23418 -12.12421 -11.53352 -11.45636 -11.41962 -10.93457 -10.75487 -10.28794 -10.00103 -9.81167 -9.62636 -9.16296 -8.46247 -5.94945 0.25941 1.39288 1.40778 1.42806 1.51906 1.82000 2.05870 2.15304 2.25019 2.28934 2.81427 3.20375 3.40576 3.44790 3.71783 3.91503 3.95723 4.06997 4.08364 4.15992 4.26735 4.31599 4.35159 4.38397 4.41626 4.45720 4.53609 4.59556 4.62224 4.64780 4.67800 4.72034 4.81738 4.89566 5.06837 5.11734 5.18694 5.29360 5.40810 5.42102 5.53358 5.89899 6.06323 6.09157 6.22790 6.26795 6.61432 6.83196 7.02570 7.13264 7.56925 8.13286 8.70902 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.001789 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.022682 B =15649.242711 C =16073.077361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.546 5.546 3 C 0.061 3.939 4 C -0.118 4.118 5 C 0.124 3.876 6 N -0.599 5.599 7 C 0.052 3.948 8 C 0.585 3.415 9 O -0.582 6.582 10 C -0.117 4.117 11 C 0.020 3.980 12 N -0.532 5.532 13 C 0.214 3.786 14 N -0.436 5.436 15 C 0.063 3.937 16 C 0.059 3.941 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.273 1.273 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.222 0.778 41 H 0.250 0.750 42 H 0.082 0.918 43 H 0.124 0.876 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 26.211 13.717 29.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.271 5.271 3 C -0.066 4.066 4 C -0.157 4.157 5 C 0.001 3.999 6 N -0.330 5.330 7 C -0.089 4.089 8 C 0.375 3.625 9 O -0.464 6.464 10 C -0.233 4.233 11 C -0.133 4.133 12 N -0.250 5.250 13 C -0.068 4.068 14 N -0.115 5.115 15 C -0.078 4.078 16 C -0.073 4.073 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.199 1.199 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.238 0.762 41 H 0.266 0.734 42 H 0.100 0.900 43 H 0.143 0.857 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.124 0.876 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.849 25.716 14.968 29.767 hybrid contribution 0.645 -1.264 -1.417 2.006 sum -0.203 24.451 13.551 27.956 Atomic orbital electron populations 1.22412 0.86772 1.02045 1.00685 1.61458 1.09055 1.14010 1.42549 1.22083 1.00497 0.86758 0.97296 1.21812 1.01661 0.95206 0.97018 1.21535 1.01557 0.92022 0.84782 1.47517 1.21623 1.52362 1.11483 1.22730 0.84319 0.96526 1.05291 1.17110 0.83992 0.78048 0.83377 1.90765 1.22022 1.48317 1.85300 1.20829 0.99008 1.14973 0.88498 1.24303 0.96785 0.98294 0.93960 1.70259 1.21577 1.24616 1.08540 1.25993 0.88020 0.94990 0.97782 1.45516 1.18543 1.40563 1.06926 1.22429 0.81205 0.98696 1.05490 1.21725 1.01937 0.90131 0.93462 1.20833 0.83692 0.88894 0.83858 1.90458 1.45256 1.81496 1.33009 1.41934 1.50051 1.07038 1.22201 1.19610 1.34440 0.84113 1.08105 0.90428 1.26041 0.96282 1.04342 0.94702 1.69666 1.38013 1.37241 1.11201 0.84991 0.78642 0.76740 0.77962 1.19645 1.19409 1.19876 0.94686 0.93082 0.90424 0.92229 0.90543 0.94344 0.90714 0.86541 0.90941 0.89761 0.87532 0.89874 0.76190 0.73368 0.89961 0.85743 0.89829 0.91103 0.87601 0.77015 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 8.96 127.69 1.14 2.06 16 2 N -0.55 -18.06 4.50 -927.05 -4.17 -22.23 16 3 C 0.06 1.43 4.96 86.30 0.43 1.85 16 4 C -0.12 -2.52 5.46 30.59 0.17 -2.35 16 5 C 0.12 2.04 5.42 86.38 0.47 2.51 16 6 N -0.60 -10.10 2.87 -851.39 -2.45 -12.55 16 7 C 0.05 0.43 8.63 127.77 1.10 1.53 16 8 C 0.58 13.62 7.62 86.47 0.66 14.28 16 9 O -0.58 -17.52 14.37 -4.28 -0.06 -17.58 16 10 C -0.12 -2.39 6.85 40.01 0.27 -2.12 16 11 C 0.02 0.35 9.91 84.10 0.83 1.18 16 12 N -0.53 -10.01 11.20 -199.56 -2.24 -12.24 16 13 C 0.21 3.05 12.52 180.33 2.26 5.30 16 14 N -0.44 -7.54 3.17 -539.81 -1.71 -9.26 16 15 C 0.06 0.83 10.81 127.77 1.38 2.21 16 16 C 0.06 2.08 5.45 85.56 0.47 2.55 16 17 C 0.44 21.50 7.47 87.66 0.66 22.16 16 18 O -0.62 -34.91 13.91 -3.06 -0.04 -34.95 16 19 N -0.57 -30.11 5.29 -306.99 -1.62 -31.73 16 20 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -50.20 13.05 21.66 0.28 -49.91 16 24 Si 0.99 43.54 29.55 68.60 2.03 45.56 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.05 2.09 5.82 -2.39 -0.01 2.07 16 30 H 0.08 2.13 6.47 -2.39 -0.02 2.12 16 31 H 0.06 1.09 8.12 -2.39 -0.02 1.07 16 32 H 0.08 1.76 7.93 -2.39 -0.02 1.74 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.46 6.55 -2.39 -0.02 1.44 16 35 H 0.12 1.12 7.98 -2.39 -0.02 1.10 16 36 H 0.07 1.47 7.33 -2.39 -0.02 1.46 16 37 H 0.08 0.46 7.42 -2.39 -0.02 0.44 16 38 H 0.11 0.41 7.86 -2.39 -0.02 0.39 16 39 H 0.08 0.68 5.46 -2.39 -0.01 0.66 16 40 H 0.22 2.34 4.13 -2.91 -0.01 2.33 16 41 H 0.25 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.08 1.55 6.27 -2.39 -0.01 1.54 16 45 H 0.07 2.19 8.12 -2.38 -0.02 2.17 16 46 H 0.11 3.38 7.93 -2.39 -0.02 3.36 16 47 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 48 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -82.70 389.88 1.40 -81.30 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.26 Total: 31.14 kcal Atomic # 6 Polarization: 21.33 SS G_CDS: 11.12 Total: 32.44 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -11.91 Total: -137.92 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.10 Total: -52.53 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -82.70 1.40 -81.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724853395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.177 kcal (2) G-P(sol) polarization free energy of solvation -82.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds