Wall clock time and date at job start Tue Mar 31 2020 21:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99838 * 2 1 4 4 C 1.52996 * 109.47232 * 66.04498 * 3 2 1 5 5 C 1.52999 * 109.47506 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47658 * 180.02562 * 5 4 3 7 7 C 1.46501 * 120.00013 * 270.00029 * 6 5 4 8 8 C 1.34780 * 120.00233 * 89.99790 * 6 5 4 9 9 O 1.21282 * 119.99800 * 0.02562 * 8 6 5 10 10 C 1.50690 * 119.99940 * 180.02562 * 8 6 5 11 11 N 1.46501 * 109.47169 * 180.02562 * 10 8 6 12 12 C 1.36890 * 126.39537 * 270.03160 * 11 10 8 13 13 C 1.34669 * 106.81617 * 179.97438 * 12 11 10 14 14 N 1.34134 * 108.02026 * 0.02562 * 13 12 11 15 15 C 1.30493 * 109.25480 * 0.02562 * 14 13 12 16 16 C 1.46894 * 110.99912 * 236.04460 * 2 1 3 17 17 C 1.50699 * 109.47338 * 293.95432 * 16 2 1 18 18 O 1.21290 * 120.00162 * 359.97438 * 17 16 2 19 19 N 1.34783 * 119.99774 * 180.02562 * 17 16 2 20 20 C 1.37100 * 119.99477 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00363 * 359.97438 * 20 19 17 22 22 C 1.38947 * 119.99559 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99912 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00210 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47311 * 90.00005 * 24 22 20 26 26 H 1.48503 * 109.47182 * 209.99611 * 24 22 20 27 27 H 1.48499 * 109.47261 * 329.99711 * 24 22 20 28 28 H 1.09002 * 109.47611 * 60.00172 * 1 2 3 29 29 H 1.09005 * 109.46991 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47473 * 300.00108 * 1 2 3 31 31 H 1.09003 * 109.47225 * 306.04842 * 3 2 1 32 32 H 1.09002 * 109.47354 * 186.04570 * 3 2 1 33 33 H 1.09004 * 109.47252 * 59.99950 * 4 3 2 34 34 H 1.09007 * 109.47429 * 300.00195 * 4 3 2 35 35 H 1.09004 * 109.46870 * 59.99760 * 5 4 3 36 36 H 1.09002 * 109.47252 * 300.00178 * 5 4 3 37 37 H 1.08996 * 109.47470 * 270.00000 * 7 6 5 38 38 H 1.09003 * 109.47106 * 29.99722 * 7 6 5 39 39 H 1.09007 * 109.47023 * 149.99553 * 7 6 5 40 40 H 1.09002 * 109.47377 * 60.00594 * 10 8 6 41 41 H 1.08998 * 109.47638 * 299.99878 * 10 8 6 42 42 H 1.07996 * 126.59258 * 359.97438 * 12 11 10 43 43 H 1.08002 * 125.99042 * 180.26007 * 13 12 11 44 44 H 1.08006 * 125.64594 * 180.02562 * 15 14 13 45 45 H 1.08999 * 109.47383 * 53.95574 * 16 2 1 46 46 H 1.09005 * 109.47233 * 173.95041 * 16 2 1 47 47 H 0.96996 * 120.00443 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00238 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1802 3.4856 1.3185 6 7 1.8322 4.1423 2.5810 7 6 0.5757 4.8867 2.6974 8 6 2.6678 4.0617 3.6354 9 8 3.7082 3.4458 3.5388 10 6 2.3095 4.7367 4.9341 11 7 3.3722 4.5033 5.9152 12 6 3.4505 3.4568 6.7942 13 6 4.5804 3.6300 7.5063 14 7 5.1753 4.7519 7.0743 15 6 4.4568 5.2807 6.1220 16 6 1.9954 -0.7660 -1.1375 17 6 1.6369 -2.2204 -0.9728 18 8 1.0054 -2.5833 -0.0029 19 7 2.0189 -3.1181 -1.9028 20 6 1.6922 -4.4412 -1.7531 21 1 1.1293 -4.7642 -0.8899 22 6 2.0856 -5.3666 -2.7121 23 7 1.7730 -6.6348 -2.5684 24 14 3.0588 -4.8078 -4.2055 25 1 4.5111 -4.8752 -3.9034 26 1 2.7511 -5.6940 -5.3567 27 1 2.6877 -3.4103 -4.5436 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.5610 1.9274 -0.8309 32 1 3.0797 1.3445 -0.1082 33 1 2.0657 1.5015 2.1492 34 1 0.5470 2.0844 1.4265 35 1 1.7462 4.0418 0.4875 36 1 3.2645 3.4583 1.2105 37 1 0.7414 5.9259 2.4134 38 1 -0.1711 4.4445 2.0380 39 1 0.2220 4.8435 3.7276 40 1 1.3716 4.3275 5.3097 41 1 2.1979 5.8082 4.7680 42 1 2.7425 2.6479 6.8969 43 1 4.9456 2.9777 8.2858 44 1 4.6916 6.1889 5.5867 45 1 1.5611 -0.3873 -2.0628 46 1 3.0797 -0.6611 -1.1756 47 1 2.5242 -2.8280 -2.6782 48 1 2.0479 -7.2810 -3.2377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724864017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:53 Heat of formation + Delta-G solvation = 21.735017 kcal Electronic energy + Delta-G solvation = -28363.987740 eV Core-core repulsion = 24263.457779 eV Total energy + Delta-G solvation = -4100.529960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.35435 -40.29918 -38.82949 -37.11161 -36.06613 -34.43272 -33.93667 -32.33406 -31.66032 -29.76467 -28.70387 -28.04110 -27.54548 -26.11128 -24.68262 -23.03205 -21.61000 -21.48848 -20.86655 -19.91782 -19.33772 -18.23740 -18.02765 -17.80509 -16.52338 -16.31551 -15.90072 -15.68272 -15.12929 -15.01548 -14.90108 -14.59135 -14.32010 -14.17225 -13.91618 -13.78000 -13.62900 -13.49392 -13.42301 -13.11323 -12.99946 -12.91808 -12.43542 -12.32908 -12.07378 -11.92568 -11.72592 -11.39291 -11.33311 -11.02613 -10.72781 -10.67708 -10.59678 -10.24497 -9.97458 -9.79727 -9.53654 -9.23270 -8.74062 -8.57216 -8.17630 -7.96172 -6.30679 -3.81973 1.65018 1.99633 2.21833 2.62966 2.98753 3.02211 3.07257 3.15061 3.74102 3.78650 3.92316 4.04630 4.10589 4.31654 4.43993 4.47233 4.56741 4.65399 4.72311 4.78593 4.95720 5.04752 5.06781 5.17579 5.21422 5.22926 5.32878 5.45002 5.47321 5.56724 5.61517 5.80223 5.82191 5.88937 5.92038 5.94305 5.96017 6.17147 6.47632 6.47863 6.69991 6.87471 7.15500 7.30563 7.57251 7.59296 7.82755 8.15115 8.60907 8.95809 9.43014 9.84225 10.82455 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017293 B = 0.001842 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.731074 B =15195.336984 C =15952.097514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.129 4.129 5 C 0.117 3.883 6 N -0.613 5.613 7 C 0.072 3.928 8 C 0.493 3.507 9 O -0.511 6.511 10 C 0.089 3.911 11 N -0.448 5.448 12 C -0.045 4.045 13 C -0.028 4.028 14 N -0.493 5.493 15 C 0.190 3.810 16 C 0.043 3.957 17 C 0.453 3.547 18 O -0.559 6.559 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.013 0.987 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.173 0.827 43 H 0.170 0.830 44 H 0.201 0.799 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 30.138 9.636 31.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.168 4.168 5 C -0.006 4.006 6 N -0.347 5.347 7 C -0.071 4.071 8 C 0.278 3.722 9 O -0.384 6.384 10 C -0.038 4.038 11 N -0.132 5.132 12 C -0.176 4.176 13 C -0.175 4.175 14 N -0.211 5.211 15 C -0.092 4.092 16 C -0.088 4.088 17 C 0.239 3.761 18 O -0.441 6.441 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.032 0.968 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.191 0.809 43 H 0.187 0.813 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.736 29.428 10.813 31.400 hybrid contribution -0.436 0.275 -2.543 2.594 sum -2.172 29.703 8.270 30.910 Atomic orbital electron populations 1.22572 0.86764 1.04499 0.98840 1.61508 1.08716 1.11474 1.42558 1.22026 1.00357 0.88798 0.95826 1.21912 1.01294 0.94481 0.99135 1.21523 1.02119 0.92975 0.83970 1.47834 1.21012 1.53207 1.12687 1.21914 0.85655 0.96390 1.03158 1.20756 0.84449 0.81649 0.85335 1.90837 1.24106 1.40897 1.82599 1.21719 0.91316 1.03383 0.87387 1.45024 1.19796 1.20889 1.27501 1.22724 1.03539 0.94963 0.96422 1.22284 0.94256 0.97354 1.03611 1.70287 1.28759 1.10047 1.12032 1.24928 0.85470 0.99457 0.99343 1.21897 1.00831 0.94021 0.92075 1.19645 0.85072 0.86463 0.84955 1.90522 1.42674 1.79954 1.30937 1.42217 1.51049 1.08382 1.21476 1.19423 1.33783 0.80326 1.09725 0.86281 1.25040 0.97901 0.95145 0.98135 1.69622 1.45698 1.01129 1.35725 0.86670 0.80964 0.78649 0.83083 1.19576 1.20204 1.19577 0.96804 0.88607 0.92100 0.95136 0.90715 0.90473 0.91635 0.90282 0.89547 0.91983 0.90197 0.91014 0.86013 0.85942 0.80933 0.81252 0.78192 0.93404 0.89256 0.79736 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.96 60.06 0.54 0.86 16 2 N -0.52 -8.31 4.50 -244.38 -1.10 -9.41 16 3 C 0.06 0.69 4.96 -3.83 -0.02 0.67 16 4 C -0.13 -1.31 5.46 -26.73 -0.15 -1.46 16 5 C 0.12 0.90 5.41 -4.04 -0.02 0.88 16 6 N -0.61 -3.90 2.87 -181.57 -0.52 -4.42 16 7 C 0.07 0.16 10.24 59.85 0.61 0.77 16 8 C 0.49 4.16 7.74 -10.99 -0.09 4.07 16 9 O -0.51 -7.05 16.01 5.56 0.09 -6.96 16 10 C 0.09 0.43 5.18 -5.20 -0.03 0.40 16 11 N -0.45 -3.77 2.24 -119.87 -0.27 -4.04 16 12 C -0.04 -0.42 11.58 -16.56 -0.19 -0.61 16 13 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 14 N -0.49 -6.07 11.25 -14.66 -0.16 -6.24 16 15 C 0.19 1.82 12.56 -90.38 -1.14 0.68 16 16 C 0.04 0.74 5.45 -4.98 -0.03 0.71 16 17 C 0.45 10.39 7.47 -10.98 -0.08 10.31 16 18 O -0.56 -15.01 13.91 5.55 0.08 -14.93 16 19 N -0.59 -14.22 5.09 -10.96 -0.06 -14.27 16 20 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 21 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.89 13.96 55.50 0.77 -25.11 16 24 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.10 1.84 5.83 -51.93 -0.30 1.54 16 30 H 0.06 0.81 6.47 -51.93 -0.34 0.47 16 31 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 32 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.62 6.55 -51.92 -0.34 0.28 16 35 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 36 H 0.09 0.83 7.42 -51.93 -0.39 0.44 16 37 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 38 H 0.08 0.17 8.07 -51.93 -0.42 -0.25 16 39 H 0.07 0.03 6.44 -51.93 -0.33 -0.30 16 40 H 0.12 0.29 7.40 -51.93 -0.38 -0.09 16 41 H 0.12 0.17 8.11 -51.93 -0.42 -0.25 16 42 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.20 1.21 8.06 -52.48 -0.42 0.78 16 45 H 0.05 0.72 8.12 -51.93 -0.42 0.29 16 46 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 47 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -39.52 397.38 -8.28 -47.79 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.34 Total: 7.85 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.04 Total: 9.00 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -1.34 Total: -63.50 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.17 Total: -21.89 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.52 -8.28 -47.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724864017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.528 kcal (2) G-P(sol) polarization free energy of solvation -39.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds