Wall clock time and date at job start Tue Mar 31 2020 21:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99838 * 2 1 4 4 C 1.52996 * 109.47232 * 66.04498 * 3 2 1 5 5 C 1.52999 * 109.47506 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47658 * 180.02562 * 5 4 3 7 7 C 1.46501 * 120.00013 * 270.00029 * 6 5 4 8 8 C 1.34780 * 120.00233 * 89.99790 * 6 5 4 9 9 O 1.21282 * 119.99800 * 0.02562 * 8 6 5 10 10 C 1.50690 * 119.99940 * 180.02562 * 8 6 5 11 11 N 1.46501 * 109.47169 * 180.02562 * 10 8 6 12 12 C 1.36890 * 126.39537 * 270.03160 * 11 10 8 13 13 C 1.34669 * 106.81617 * 179.97438 * 12 11 10 14 14 N 1.34134 * 108.02026 * 0.02562 * 13 12 11 15 15 C 1.30493 * 109.25480 * 0.02562 * 14 13 12 16 16 C 1.46894 * 110.99912 * 236.04460 * 2 1 3 17 17 C 1.50699 * 109.47338 * 293.95432 * 16 2 1 18 18 O 1.21290 * 120.00162 * 359.97438 * 17 16 2 19 19 N 1.34783 * 119.99774 * 180.02562 * 17 16 2 20 20 C 1.37100 * 119.99477 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00363 * 359.97438 * 20 19 17 22 22 C 1.38947 * 119.99559 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99912 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00210 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47311 * 90.00005 * 24 22 20 26 26 H 1.48503 * 109.47182 * 209.99611 * 24 22 20 27 27 H 1.48499 * 109.47261 * 329.99711 * 24 22 20 28 28 H 1.09002 * 109.47611 * 60.00172 * 1 2 3 29 29 H 1.09005 * 109.46991 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47473 * 300.00108 * 1 2 3 31 31 H 1.09003 * 109.47225 * 306.04842 * 3 2 1 32 32 H 1.09002 * 109.47354 * 186.04570 * 3 2 1 33 33 H 1.09004 * 109.47252 * 59.99950 * 4 3 2 34 34 H 1.09007 * 109.47429 * 300.00195 * 4 3 2 35 35 H 1.09004 * 109.46870 * 59.99760 * 5 4 3 36 36 H 1.09002 * 109.47252 * 300.00178 * 5 4 3 37 37 H 1.08996 * 109.47470 * 270.00000 * 7 6 5 38 38 H 1.09003 * 109.47106 * 29.99722 * 7 6 5 39 39 H 1.09007 * 109.47023 * 149.99553 * 7 6 5 40 40 H 1.09002 * 109.47377 * 60.00594 * 10 8 6 41 41 H 1.08998 * 109.47638 * 299.99878 * 10 8 6 42 42 H 1.07996 * 126.59258 * 359.97438 * 12 11 10 43 43 H 1.08002 * 125.99042 * 180.26007 * 13 12 11 44 44 H 1.08006 * 125.64594 * 180.02562 * 15 14 13 45 45 H 1.08999 * 109.47383 * 53.95574 * 16 2 1 46 46 H 1.09005 * 109.47233 * 173.95041 * 16 2 1 47 47 H 0.96996 * 120.00443 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00238 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1802 3.4856 1.3185 6 7 1.8322 4.1423 2.5810 7 6 0.5757 4.8867 2.6974 8 6 2.6678 4.0617 3.6354 9 8 3.7082 3.4458 3.5388 10 6 2.3095 4.7367 4.9341 11 7 3.3722 4.5033 5.9152 12 6 3.4505 3.4568 6.7942 13 6 4.5804 3.6300 7.5063 14 7 5.1753 4.7519 7.0743 15 6 4.4568 5.2807 6.1220 16 6 1.9954 -0.7660 -1.1375 17 6 1.6369 -2.2204 -0.9728 18 8 1.0054 -2.5833 -0.0029 19 7 2.0189 -3.1181 -1.9028 20 6 1.6922 -4.4412 -1.7531 21 1 1.1293 -4.7642 -0.8899 22 6 2.0856 -5.3666 -2.7121 23 7 1.7730 -6.6348 -2.5684 24 14 3.0588 -4.8078 -4.2055 25 1 4.5111 -4.8752 -3.9034 26 1 2.7511 -5.6940 -5.3567 27 1 2.6877 -3.4103 -4.5436 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.5610 1.9274 -0.8309 32 1 3.0797 1.3445 -0.1082 33 1 2.0657 1.5015 2.1492 34 1 0.5470 2.0844 1.4265 35 1 1.7462 4.0418 0.4875 36 1 3.2645 3.4583 1.2105 37 1 0.7414 5.9259 2.4134 38 1 -0.1711 4.4445 2.0380 39 1 0.2220 4.8435 3.7276 40 1 1.3716 4.3275 5.3097 41 1 2.1979 5.8082 4.7680 42 1 2.7425 2.6479 6.8969 43 1 4.9456 2.9777 8.2858 44 1 4.6916 6.1889 5.5867 45 1 1.5611 -0.3873 -2.0628 46 1 3.0797 -0.6611 -1.1756 47 1 2.5242 -2.8280 -2.6782 48 1 2.0479 -7.2810 -3.2377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724864017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:52 Heat of formation + Delta-G solvation = -8.512642 kcal Electronic energy + Delta-G solvation = -28365.299377 eV Core-core repulsion = 24263.457779 eV Total energy + Delta-G solvation = -4101.841597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.00552 -40.92129 -40.50126 -38.32199 -36.83664 -35.93922 -35.04047 -33.77486 -33.16199 -30.45746 -29.74123 -29.00897 -28.03337 -27.14318 -26.19231 -24.14539 -22.30362 -22.21239 -21.81184 -21.27423 -20.47531 -20.15435 -18.56979 -18.35337 -17.84627 -16.95373 -16.95197 -16.74134 -16.69382 -16.19542 -15.86373 -15.63310 -15.33769 -15.07508 -14.91468 -14.81810 -14.72869 -14.39883 -14.26646 -14.12630 -14.07861 -13.72926 -13.35424 -13.33858 -13.13141 -12.86418 -12.83470 -12.73109 -12.50753 -12.43284 -12.34408 -11.98435 -11.54633 -11.48261 -11.42775 -10.99180 -10.47126 -10.38030 -10.24533 -9.74020 -9.44800 -9.18961 -8.42266 -6.03029 1.00904 1.28530 1.34793 1.43156 1.43861 1.70872 1.94603 2.12527 2.21949 2.24475 2.64095 3.13403 3.25030 3.40092 3.76647 3.86167 3.92514 3.97861 4.06428 4.08048 4.10527 4.27842 4.35647 4.38347 4.39366 4.48132 4.56700 4.57717 4.60963 4.68335 4.72135 4.76786 4.82657 5.00132 5.09438 5.14716 5.25400 5.27763 5.49990 5.52262 5.78983 5.89406 6.01866 6.16031 6.23098 6.33873 6.59140 6.87590 7.03192 7.12494 7.38896 7.96531 8.75408 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017293 B = 0.001842 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.731074 B =15195.336984 C =15952.097514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.550 5.550 3 C 0.061 3.939 4 C -0.118 4.118 5 C 0.121 3.879 6 N -0.608 5.608 7 C 0.062 3.938 8 C 0.487 3.513 9 O -0.577 6.577 10 C 0.090 3.910 11 N -0.448 5.448 12 C -0.048 4.048 13 C -0.060 4.060 14 N -0.539 5.539 15 C 0.186 3.814 16 C 0.055 3.945 17 C 0.450 3.550 18 O -0.607 6.607 19 N -0.593 5.593 20 C -0.327 4.327 21 H 0.054 0.946 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.230 1.230 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.192 0.808 43 H 0.176 0.824 44 H 0.230 0.770 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 34.407 7.213 35.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.274 5.274 3 C -0.066 4.066 4 C -0.157 4.157 5 C -0.002 4.002 6 N -0.340 5.340 7 C -0.079 4.079 8 C 0.274 3.726 9 O -0.456 6.456 10 C -0.035 4.035 11 N -0.131 5.131 12 C -0.180 4.180 13 C -0.206 4.206 14 N -0.258 5.258 15 C -0.097 4.097 16 C -0.076 4.076 17 C 0.238 3.762 18 O -0.491 6.491 19 N -0.235 5.235 20 C -0.456 4.456 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.154 1.154 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.170 0.830 41 H 0.183 0.817 42 H 0.209 0.791 43 H 0.193 0.807 44 H 0.247 0.753 45 H 0.099 0.901 46 H 0.133 0.867 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.232 33.761 8.383 34.857 hybrid contribution -0.428 -1.060 -1.684 2.035 sum -2.659 32.701 6.699 33.485 Atomic orbital electron populations 1.22417 0.86720 1.01976 1.00883 1.61435 1.09107 1.14182 1.42711 1.22090 1.00412 0.86631 0.97501 1.21788 1.01557 0.95404 0.96948 1.21417 1.00916 0.92060 0.85820 1.47952 1.21966 1.52472 1.11647 1.22263 0.83646 0.96984 1.04989 1.21408 0.83684 0.80836 0.86669 1.90816 1.27012 1.43990 1.83814 1.22094 0.90978 1.05720 0.84671 1.45203 1.20240 1.20092 1.27541 1.23060 1.03334 0.95512 0.96137 1.22596 0.95342 0.97804 1.04831 1.70223 1.30475 1.11204 1.13878 1.25502 0.85357 1.00144 0.98677 1.21818 1.02558 0.89288 0.93943 1.20944 0.82926 0.88943 0.83431 1.90511 1.44265 1.81480 1.32807 1.42047 1.51837 1.06813 1.22761 1.18988 1.34813 0.83118 1.08725 0.92752 1.26132 0.98682 0.94684 1.02036 1.69807 1.47205 1.02984 1.37540 0.85356 0.78908 0.80193 0.77001 1.18338 1.19899 1.15359 0.94335 0.93337 0.90399 0.92079 0.90674 0.94531 0.90665 0.87000 0.91825 0.89743 0.89660 0.88757 0.83027 0.81731 0.79099 0.80674 0.75349 0.90057 0.86740 0.77532 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 8.96 127.69 1.14 1.96 16 2 N -0.55 -16.67 4.50 -927.07 -4.17 -20.84 16 3 C 0.06 1.25 4.96 86.30 0.43 1.68 16 4 C -0.12 -2.17 5.46 30.59 0.17 -2.00 16 5 C 0.12 1.56 5.41 86.38 0.47 2.02 16 6 N -0.61 -5.91 2.87 -846.75 -2.43 -8.34 16 7 C 0.06 -0.01 10.24 127.77 1.31 1.30 16 8 C 0.49 7.30 7.74 87.65 0.68 7.98 16 9 O -0.58 -16.04 16.01 -3.04 -0.05 -16.09 16 10 C 0.09 0.57 5.18 85.63 0.44 1.02 16 11 N -0.45 -6.88 2.24 -533.16 -1.19 -8.08 16 12 C -0.05 -0.87 11.58 83.08 0.96 0.09 16 13 C -0.06 -1.34 11.87 83.52 0.99 -0.35 16 14 N -0.54 -13.57 11.25 -200.31 -2.25 -15.82 16 15 C 0.19 3.40 12.56 180.27 2.26 5.66 16 16 C 0.06 1.73 5.45 85.56 0.47 2.20 16 17 C 0.45 20.78 7.47 87.66 0.66 21.43 16 18 O -0.61 -34.20 13.91 -3.06 -0.04 -34.24 16 19 N -0.59 -28.45 5.09 -306.98 -1.56 -30.02 16 20 C -0.33 -19.45 10.16 84.04 0.85 -18.60 16 21 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 22 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 23 N -0.93 -56.98 13.96 21.66 0.30 -56.67 16 24 Si 0.97 39.20 27.74 68.60 1.90 41.11 16 25 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 1.90 5.83 -2.38 -0.01 1.88 16 30 H 0.08 1.94 6.47 -2.39 -0.02 1.93 16 31 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 32 H 0.07 1.54 7.93 -2.39 -0.02 1.52 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.21 6.55 -2.38 -0.02 1.20 16 35 H 0.11 0.72 8.07 -2.39 -0.02 0.71 16 36 H 0.06 1.14 7.42 -2.39 -0.02 1.13 16 37 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.08 -0.04 8.07 -2.39 -0.02 -0.06 16 39 H 0.09 -0.41 6.44 -2.38 -0.02 -0.43 16 40 H 0.15 0.07 7.40 -2.39 -0.02 0.06 16 41 H 0.17 -0.35 8.11 -2.39 -0.02 -0.37 16 42 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 43 H 0.18 3.32 8.06 -2.91 -0.02 3.29 16 44 H 0.23 2.36 8.06 -2.91 -0.02 2.34 16 45 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 46 H 0.11 3.06 7.93 -2.38 -0.02 3.04 16 47 H 0.39 15.43 5.76 -92.71 -0.53 14.90 16 48 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -97.37 397.38 2.17 -95.20 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.38 Total: 29.90 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 11.30 Total: 23.90 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -11.31 Total: -139.77 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.09 Total: -50.33 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 1.90 Total: 41.11 kcal Total: -97.37 2.17 -95.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724864017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.685 kcal (2) G-P(sol) polarization free energy of solvation -97.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds