Wall clock time and date at job start Tue Mar 31 2020 21:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 119.99762 * 2 1 4 4 H 1.07999 * 119.99900 * 202.99154 * 3 2 1 5 5 C 1.38814 * 119.99636 * 23.00540 * 3 2 1 6 6 N 1.31615 * 120.00183 * 11.62441 * 5 3 2 7 7 Si 1.86802 * 119.99549 * 191.63614 * 5 3 2 8 8 H 1.48496 * 109.47409 * 59.99486 * 7 5 3 9 9 H 1.48497 * 109.46850 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47064 * 299.99227 * 7 5 3 11 11 C 1.46503 * 120.00271 * 180.02562 * 2 1 3 12 12 C 1.53035 * 109.45828 * 299.99383 * 11 2 1 13 13 C 1.53195 * 109.31341 * 181.38378 * 12 11 2 14 14 N 1.46926 * 108.77390 * 305.37042 * 13 12 11 15 15 C 1.34782 * 120.62777 * 233.58269 * 14 13 12 16 16 O 1.21277 * 119.99787 * 0.02562 * 15 14 13 17 17 C 1.50693 * 119.99989 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.47292 * 179.97438 * 17 15 14 19 19 C 1.42906 * 114.00212 * 180.02562 * 18 17 15 20 20 C 1.50693 * 109.46911 * 180.02562 * 19 18 17 21 21 N 1.30518 * 126.34716 * 269.95289 * 20 19 18 22 22 N 1.28600 * 109.67751 * 180.02562 * 21 20 19 23 23 C 1.30526 * 109.66588 * 359.72667 * 22 21 20 24 24 N 1.35489 * 107.31133 * 0.43714 * 23 22 21 25 25 C 1.46497 * 126.98398 * 179.83959 * 24 23 22 26 26 C 1.46923 * 118.74095 * 53.85665 * 14 13 12 27 27 C 1.53042 * 109.45962 * 60.06686 * 11 2 1 28 28 H 1.08997 * 109.46791 * 273.83828 * 1 2 3 29 29 H 1.08999 * 109.47573 * 33.84203 * 1 2 3 30 30 H 1.09005 * 109.46960 * 153.84581 * 1 2 3 31 31 H 0.97004 * 120.00195 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.44564 * 180.02562 * 11 2 1 33 33 H 1.09004 * 109.49719 * 61.43918 * 12 11 2 34 34 H 1.08994 * 109.52709 * 301.35810 * 12 11 2 35 35 H 1.08998 * 109.58754 * 185.58275 * 13 12 11 36 36 H 1.09000 * 109.69978 * 65.22139 * 13 12 11 37 37 H 1.09000 * 109.47433 * 59.99905 * 17 15 14 38 38 H 1.09002 * 109.47008 * 299.99978 * 17 15 14 39 39 H 1.09000 * 109.47061 * 59.99744 * 19 18 17 40 40 H 1.09002 * 109.46594 * 300.00255 * 19 18 17 41 41 H 1.08001 * 126.34135 * 180.29754 * 23 22 21 42 42 H 1.08994 * 109.46858 * 269.68268 * 25 24 23 43 43 H 1.08995 * 109.47434 * 149.68309 * 25 24 23 44 44 H 1.09004 * 109.46845 * 29.68480 * 25 24 23 45 45 H 1.09000 * 109.58721 * 65.92850 * 26 14 13 46 46 H 1.09004 * 109.58777 * 186.35048 * 26 14 13 47 47 H 1.09002 * 109.49503 * 298.56259 * 27 11 2 48 48 H 1.08990 * 109.49746 * 58.66066 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1653 1.2232 -0.3653 5 6 1.5383 2.3403 0.4698 6 7 0.3978 2.2621 1.1221 7 14 2.3341 4.0045 0.1760 8 1 2.4680 4.2383 -1.2843 9 1 1.4883 5.0697 0.7719 10 1 3.6785 4.0286 0.8065 11 6 2.1976 -1.2687 -0.0006 12 6 1.8278 -2.0715 1.2488 13 6 2.6214 -3.3817 1.2624 14 7 2.3851 -4.0909 -0.0025 15 6 1.9590 -5.3696 -0.0036 16 8 1.7665 -5.9455 1.0463 17 6 1.7216 -6.0836 -1.3092 18 8 1.2778 -7.4168 -1.0493 19 6 1.0231 -8.1847 -2.2272 20 6 0.5628 -9.5655 -1.8368 21 7 1.3237 -10.6068 -1.6363 22 7 0.5973 -11.6190 -1.3178 23 6 -0.6596 -11.2680 -1.2949 24 7 -0.7180 -9.9563 -1.6296 25 6 -1.9209 -9.1274 -1.7390 26 6 2.6279 -3.3817 -1.2661 27 6 1.8289 -2.0697 -1.2514 28 1 -0.3633 0.0688 1.0254 29 1 -0.3634 0.8535 -0.5723 30 1 -0.3633 -0.9225 -0.4530 31 1 -0.0296 3.0688 1.4501 32 1 3.2691 -1.0690 0.0000 33 1 0.7605 -2.2928 1.2363 34 1 2.0686 -1.4909 2.1393 35 1 2.2901 -4.0010 2.0960 36 1 3.6847 -3.1662 1.3673 37 1 2.6496 -6.1148 -1.8802 38 1 0.9609 -5.5520 -1.8810 39 1 1.9367 -8.2591 -2.8170 40 1 0.2478 -7.6971 -2.8182 41 1 -1.4980 -11.9055 -1.0560 42 1 -2.3029 -9.1742 -2.7587 43 1 -1.6747 -8.0952 -1.4902 44 1 -2.6802 -9.4962 -1.0492 45 1 3.6914 -3.1640 -1.3644 46 1 2.3010 -4.0010 -2.1014 47 1 0.7617 -2.2910 -1.2403 48 1 2.0710 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725423527.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:16 Heat of formation + Delta-G solvation = 40.137944 kcal Electronic energy + Delta-G solvation = -29226.299413 eV Core-core repulsion = 25126.567463 eV Total energy + Delta-G solvation = -4099.731950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.46181 -40.20685 -38.32456 -37.27147 -35.43270 -35.11116 -32.40732 -31.99809 -31.03370 -29.88743 -28.55738 -28.02767 -26.52491 -26.04384 -24.70897 -22.88759 -22.75955 -22.11043 -21.39413 -20.03015 -18.64914 -17.85474 -17.44235 -16.96702 -16.78785 -16.68005 -16.34254 -15.70218 -15.47669 -15.05234 -14.98471 -14.66126 -14.00260 -13.88921 -13.83767 -13.56538 -13.52576 -13.21197 -13.13844 -12.61984 -12.50182 -12.25975 -12.15891 -11.83695 -11.77728 -11.51143 -11.00940 -10.90335 -10.81133 -10.74245 -10.59387 -10.44340 -10.30370 -10.22438 -10.19686 -9.90110 -9.80638 -9.68007 -9.56908 -8.61761 -8.52065 -6.79504 -5.76046 -3.22768 1.25979 2.03686 2.39955 2.57969 2.79185 3.35199 3.40934 3.41391 3.50355 4.01540 4.10366 4.21342 4.39761 4.43607 4.46701 4.54130 4.67445 4.75587 4.87084 4.87738 4.95378 5.14086 5.16199 5.31464 5.34818 5.44686 5.45544 5.52691 5.71734 5.72071 5.83196 5.95192 6.09230 6.19193 6.28268 6.37698 6.44618 6.48468 6.60998 6.73761 6.92211 6.95846 7.34537 7.42021 7.69399 7.76509 8.17407 8.36347 8.36737 9.20014 9.83278 10.32551 11.28725 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028681 B = 0.001961 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.025547 B =14271.674891 C =14533.676187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.115 3.885 14 N -0.604 5.604 15 C 0.515 3.485 16 O -0.526 6.526 17 C 0.046 3.954 18 O -0.357 6.357 19 C 0.149 3.851 20 C 0.176 3.824 21 N -0.271 5.271 22 N -0.297 5.297 23 C 0.155 3.845 24 N -0.468 5.468 25 C 0.069 3.931 26 C 0.107 3.893 27 C -0.148 4.148 28 H 0.027 0.973 29 H 0.042 0.958 30 H -0.004 1.004 31 H 0.253 0.747 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.221 0.779 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -20.018 -10.241 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.070 3.930 12 C -0.184 4.184 13 C -0.007 4.007 14 N -0.340 5.340 15 C 0.301 3.699 16 O -0.402 6.402 17 C -0.034 4.034 18 O -0.274 6.274 19 C 0.070 3.930 20 C -0.092 4.092 21 N -0.114 5.114 22 N -0.137 5.137 23 C -0.132 4.132 24 N -0.159 5.159 25 C -0.074 4.074 26 C -0.016 4.016 27 C -0.188 4.188 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.238 0.762 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.988 -21.051 -9.299 23.206 hybrid contribution -1.044 1.949 -0.426 2.251 sum -4.032 -19.102 -9.725 21.811 Atomic orbital electron populations 1.20734 0.82787 0.95346 0.99120 1.43947 1.01761 1.00159 1.85884 1.19170 0.98276 0.85511 1.35605 0.91470 1.25043 0.97805 0.98560 0.98257 1.70054 1.18480 1.27302 1.39410 0.86334 0.78524 0.83813 0.77825 1.21122 1.21679 1.20939 1.20282 0.96085 0.86075 0.90543 1.22506 0.99954 0.94357 1.01619 1.21720 0.99957 0.93691 0.85320 1.48111 1.66131 1.11259 1.08457 1.20020 0.77666 0.81742 0.90444 1.90725 1.50711 1.65621 1.33147 1.22326 1.00926 0.83690 0.96430 1.88085 1.87526 1.23093 1.28708 1.20501 1.01176 0.83606 0.87706 1.24264 0.81000 0.98261 1.05653 1.74271 1.25887 0.95770 1.15435 1.74304 1.00121 1.21593 1.17681 1.26514 0.99568 0.83853 1.03248 1.46189 1.08570 1.10850 1.50301 1.22207 0.84774 0.96292 1.04148 1.21953 1.00756 0.94301 0.84567 1.22564 1.00010 0.94644 1.01576 0.95487 0.93922 0.98550 0.93697 0.91829 0.92256 0.90508 0.89596 0.91521 0.89660 0.89831 0.89043 0.90952 0.76222 0.89640 0.88592 0.88543 0.90933 0.90701 0.91905 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 8.03 59.85 0.48 4.36 16 2 N -0.60 -13.98 2.81 -173.44 -0.49 -14.47 16 3 C -0.26 -6.70 9.59 -15.06 -0.14 -6.84 16 4 H 0.07 1.71 7.82 -52.49 -0.41 1.30 16 5 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 6 N -0.91 -25.83 10.64 55.49 0.59 -25.24 16 7 Si 0.91 21.24 29.57 -169.99 -5.03 16.22 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 C 0.18 3.28 2.55 -67.89 -0.17 3.11 16 12 C -0.14 -2.50 5.34 -26.61 -0.14 -2.64 16 13 C 0.12 1.70 6.43 -3.71 -0.02 1.68 16 14 N -0.60 -8.04 2.97 -172.51 -0.51 -8.55 16 15 C 0.51 7.28 7.77 -10.99 -0.09 7.19 16 16 O -0.53 -9.83 15.91 -14.35 -0.23 -10.06 16 17 C 0.05 0.44 4.76 36.00 0.17 0.62 16 18 O -0.36 -4.22 9.86 -55.14 -0.54 -4.77 16 19 C 0.15 1.22 6.11 36.00 0.22 1.44 16 20 C 0.18 1.90 7.66 -154.99 -1.19 0.71 16 21 N -0.27 -3.80 12.21 32.79 0.40 -3.40 16 22 N -0.30 -3.87 12.21 29.69 0.36 -3.50 16 23 C 0.16 1.32 12.74 -89.95 -1.15 0.18 16 24 N -0.47 -3.77 3.15 -122.69 -0.39 -4.16 16 25 C 0.07 0.24 10.89 59.85 0.65 0.90 16 26 C 0.11 1.17 6.37 -3.49 -0.02 1.15 16 27 C -0.15 -2.13 5.34 -26.39 -0.14 -2.27 16 28 H 0.03 0.70 7.42 -51.93 -0.39 0.31 16 29 H 0.04 1.09 7.22 -51.93 -0.37 0.71 16 30 H 0.00 -0.08 6.46 -51.93 -0.34 -0.42 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.06 1.18 7.86 -51.93 -0.41 0.77 16 33 H 0.06 1.10 7.72 -51.93 -0.40 0.70 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.60 7.93 -51.93 -0.41 0.19 16 38 H 0.08 0.58 7.70 -51.93 -0.40 0.18 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.35 7.85 -51.93 -0.41 -0.06 16 41 H 0.22 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.10 0.38 7.81 -51.93 -0.41 -0.02 16 44 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.57 5.93 -51.93 -0.31 0.26 16 47 H 0.06 0.95 6.72 -51.93 -0.35 0.60 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -37.62 388.18 -9.09 -46.70 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -7.48 Total: -4.16 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -1.63 Total: 9.53 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.03 Total: -59.32 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.77 Total: -14.83 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.62 -9.09 -46.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725423527.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.842 kcal (2) G-P(sol) polarization free energy of solvation -37.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds