Wall clock time and date at job start Tue Mar 31 2020 21:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 119.99762 * 2 1 4 4 H 1.07999 * 119.99900 * 202.99154 * 3 2 1 5 5 C 1.38814 * 119.99636 * 23.00540 * 3 2 1 6 6 N 1.31615 * 120.00183 * 11.62441 * 5 3 2 7 7 Si 1.86802 * 119.99549 * 191.63614 * 5 3 2 8 8 H 1.48496 * 109.47409 * 59.99486 * 7 5 3 9 9 H 1.48497 * 109.46850 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47064 * 299.99227 * 7 5 3 11 11 C 1.46503 * 120.00271 * 180.02562 * 2 1 3 12 12 C 1.53035 * 109.45828 * 299.99383 * 11 2 1 13 13 C 1.53195 * 109.31341 * 181.38378 * 12 11 2 14 14 N 1.46926 * 108.77390 * 305.37042 * 13 12 11 15 15 C 1.34782 * 120.62777 * 233.58269 * 14 13 12 16 16 O 1.21277 * 119.99787 * 0.02562 * 15 14 13 17 17 C 1.50693 * 119.99989 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.47292 * 179.97438 * 17 15 14 19 19 C 1.42906 * 114.00212 * 180.02562 * 18 17 15 20 20 C 1.50693 * 109.46911 * 180.02562 * 19 18 17 21 21 N 1.30518 * 126.34716 * 269.95289 * 20 19 18 22 22 N 1.28600 * 109.67751 * 180.02562 * 21 20 19 23 23 C 1.30526 * 109.66588 * 359.72667 * 22 21 20 24 24 N 1.35489 * 107.31133 * 0.43714 * 23 22 21 25 25 C 1.46497 * 126.98398 * 179.83959 * 24 23 22 26 26 C 1.46923 * 118.74095 * 53.85665 * 14 13 12 27 27 C 1.53042 * 109.45962 * 60.06686 * 11 2 1 28 28 H 1.08997 * 109.46791 * 273.83828 * 1 2 3 29 29 H 1.08999 * 109.47573 * 33.84203 * 1 2 3 30 30 H 1.09005 * 109.46960 * 153.84581 * 1 2 3 31 31 H 0.97004 * 120.00195 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.44564 * 180.02562 * 11 2 1 33 33 H 1.09004 * 109.49719 * 61.43918 * 12 11 2 34 34 H 1.08994 * 109.52709 * 301.35810 * 12 11 2 35 35 H 1.08998 * 109.58754 * 185.58275 * 13 12 11 36 36 H 1.09000 * 109.69978 * 65.22139 * 13 12 11 37 37 H 1.09000 * 109.47433 * 59.99905 * 17 15 14 38 38 H 1.09002 * 109.47008 * 299.99978 * 17 15 14 39 39 H 1.09000 * 109.47061 * 59.99744 * 19 18 17 40 40 H 1.09002 * 109.46594 * 300.00255 * 19 18 17 41 41 H 1.08001 * 126.34135 * 180.29754 * 23 22 21 42 42 H 1.08994 * 109.46858 * 269.68268 * 25 24 23 43 43 H 1.08995 * 109.47434 * 149.68309 * 25 24 23 44 44 H 1.09004 * 109.46845 * 29.68480 * 25 24 23 45 45 H 1.09000 * 109.58721 * 65.92850 * 26 14 13 46 46 H 1.09004 * 109.58777 * 186.35048 * 26 14 13 47 47 H 1.09002 * 109.49503 * 298.56259 * 27 11 2 48 48 H 1.08990 * 109.49746 * 58.66066 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1653 1.2232 -0.3653 5 6 1.5383 2.3403 0.4698 6 7 0.3978 2.2621 1.1221 7 14 2.3341 4.0045 0.1760 8 1 2.4680 4.2383 -1.2843 9 1 1.4883 5.0697 0.7719 10 1 3.6785 4.0286 0.8065 11 6 2.1976 -1.2687 -0.0006 12 6 1.8278 -2.0715 1.2488 13 6 2.6214 -3.3817 1.2624 14 7 2.3851 -4.0909 -0.0025 15 6 1.9590 -5.3696 -0.0036 16 8 1.7665 -5.9455 1.0463 17 6 1.7216 -6.0836 -1.3092 18 8 1.2778 -7.4168 -1.0493 19 6 1.0231 -8.1847 -2.2272 20 6 0.5628 -9.5655 -1.8368 21 7 1.3237 -10.6068 -1.6363 22 7 0.5973 -11.6190 -1.3178 23 6 -0.6596 -11.2680 -1.2949 24 7 -0.7180 -9.9563 -1.6296 25 6 -1.9209 -9.1274 -1.7390 26 6 2.6279 -3.3817 -1.2661 27 6 1.8289 -2.0697 -1.2514 28 1 -0.3633 0.0688 1.0254 29 1 -0.3634 0.8535 -0.5723 30 1 -0.3633 -0.9225 -0.4530 31 1 -0.0296 3.0688 1.4501 32 1 3.2691 -1.0690 0.0000 33 1 0.7605 -2.2928 1.2363 34 1 2.0686 -1.4909 2.1393 35 1 2.2901 -4.0010 2.0960 36 1 3.6847 -3.1662 1.3673 37 1 2.6496 -6.1148 -1.8802 38 1 0.9609 -5.5520 -1.8810 39 1 1.9367 -8.2591 -2.8170 40 1 0.2478 -7.6971 -2.8182 41 1 -1.4980 -11.9055 -1.0560 42 1 -2.3029 -9.1742 -2.7587 43 1 -1.6747 -8.0952 -1.4902 44 1 -2.6802 -9.4962 -1.0492 45 1 3.6914 -3.1640 -1.3644 46 1 2.3010 -4.0010 -2.1014 47 1 0.7617 -2.2910 -1.2403 48 1 2.0710 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725423527.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:14 Heat of formation + Delta-G solvation = 15.866400 kcal Electronic energy + Delta-G solvation = -29227.351906 eV Core-core repulsion = 25126.567463 eV Total energy + Delta-G solvation = -4100.784443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.13732 -41.28211 -39.30527 -38.43830 -36.67842 -36.01231 -33.98711 -32.83172 -32.20196 -31.45584 -29.38938 -28.49665 -28.01161 -27.25869 -26.08379 -24.07028 -23.67734 -23.40705 -22.04096 -21.31616 -19.85090 -18.75871 -18.63323 -18.07116 -17.78064 -17.38809 -17.14985 -16.95328 -16.51137 -16.21162 -15.82116 -15.72649 -15.47344 -15.09244 -15.00492 -14.55972 -14.53172 -14.27669 -13.97982 -13.79738 -13.62480 -13.19210 -13.16292 -13.06136 -12.96882 -12.76896 -12.59792 -12.58330 -12.33053 -12.22087 -12.06509 -11.80459 -11.59228 -11.45220 -11.21749 -11.14141 -10.84936 -10.82053 -10.58348 -10.42796 -9.68231 -8.73752 -7.79396 -5.27467 0.62286 1.48671 1.50064 1.50850 1.55543 1.56685 1.67863 1.90808 2.52824 2.80454 3.33305 3.34122 3.58233 3.64942 3.71156 3.85899 3.90254 3.98004 4.12233 4.16041 4.21397 4.24834 4.28636 4.35433 4.39459 4.41385 4.59177 4.59479 4.69457 4.73551 4.82810 4.85647 4.87011 4.94320 5.02200 5.09568 5.12536 5.28060 5.36567 5.52608 5.61558 5.68893 5.75298 5.85260 5.93480 6.36379 6.41881 7.13864 7.18803 7.64576 7.92257 8.36144 9.23599 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028681 B = 0.001961 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.025547 B =14271.674891 C =14533.676187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.612 5.612 3 C -0.257 4.257 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.942 5.942 7 Si 0.967 3.033 8 H -0.276 1.276 9 H -0.300 1.300 10 H -0.277 1.277 11 C 0.171 3.829 12 C -0.131 4.131 13 C 0.124 3.876 14 N -0.604 5.604 15 C 0.508 3.492 16 O -0.583 6.583 17 C 0.050 3.950 18 O -0.395 6.395 19 C 0.149 3.851 20 C 0.165 3.835 21 N -0.325 5.325 22 N -0.352 5.352 23 C 0.167 3.833 24 N -0.466 5.466 25 C 0.061 3.939 26 C 0.112 3.888 27 C -0.136 4.136 28 H -0.007 1.007 29 H 0.015 0.985 30 H 0.029 0.971 31 H 0.245 0.755 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.264 0.736 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.122 0.878 47 H 0.057 0.943 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 -20.753 -13.124 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.334 5.334 3 C -0.387 4.387 4 H 0.093 0.907 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.796 3.204 8 H -0.202 1.202 9 H -0.227 1.227 10 H -0.202 1.202 11 C 0.064 3.936 12 C -0.171 4.171 13 C 0.001 3.999 14 N -0.337 5.337 15 C 0.297 3.703 16 O -0.463 6.463 17 C -0.028 4.028 18 O -0.313 6.313 19 C 0.071 3.929 20 C -0.105 4.105 21 N -0.167 5.167 22 N -0.191 5.191 23 C -0.121 4.121 24 N -0.156 5.156 25 C -0.079 4.079 26 C -0.010 4.010 27 C -0.176 4.176 28 H 0.011 0.989 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.280 0.720 42 H 0.129 0.871 43 H 0.112 0.888 44 H 0.134 0.866 45 H 0.109 0.891 46 H 0.140 0.860 47 H 0.075 0.925 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.912 -21.800 -12.234 25.167 hybrid contribution -1.101 2.126 0.495 2.445 sum -4.014 -19.673 -11.739 23.259 Atomic orbital electron populations 1.20399 0.83297 0.95643 0.96851 1.44204 1.01809 1.01409 1.85945 1.19566 0.98506 0.86629 1.34025 0.90714 1.25810 0.98621 1.01943 0.98888 1.70238 1.20061 1.27443 1.41187 0.85336 0.77549 0.79640 0.77875 1.20213 1.22664 1.20246 1.20569 0.95543 0.84682 0.92801 1.22283 0.99264 0.95392 1.00171 1.21459 1.00124 0.91957 0.86359 1.48187 1.65636 1.11371 1.08548 1.20945 0.76137 0.81601 0.91628 1.90704 1.53059 1.66882 1.35647 1.22454 1.03779 0.82891 0.93704 1.88025 1.88039 1.24195 1.31020 1.20788 1.03111 0.82225 0.86807 1.24782 0.81900 0.98745 1.05025 1.74134 1.27865 0.97115 1.17576 1.74167 1.02203 1.22605 1.20144 1.27318 0.99382 0.84515 1.00888 1.46475 1.08988 1.10984 1.49167 1.22560 0.83454 0.95553 1.06383 1.22151 1.01405 0.92795 0.84637 1.22375 1.00275 0.95923 0.99035 0.98884 0.96643 0.95294 0.94540 0.91877 0.93919 0.93276 0.91169 0.90003 0.86213 0.86105 0.87837 0.86958 0.72029 0.87070 0.88805 0.86602 0.89061 0.85969 0.92461 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.76 8.03 127.77 1.03 9.79 16 2 N -0.61 -28.66 2.81 -702.63 -1.97 -30.64 16 3 C -0.26 -13.42 9.59 84.03 0.81 -12.61 16 4 H 0.08 3.72 7.82 -2.91 -0.02 3.69 16 5 C -0.06 -3.18 5.12 84.86 0.43 -2.74 16 6 N -0.94 -55.26 10.64 21.65 0.23 -55.03 16 7 Si 0.97 43.99 29.57 68.60 2.03 46.02 16 8 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 9 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 C 0.17 6.07 2.55 45.02 0.11 6.18 16 12 C -0.13 -4.57 5.34 30.67 0.16 -4.41 16 13 C 0.12 3.58 6.43 86.36 0.56 4.14 16 14 N -0.60 -14.39 2.97 -818.08 -2.43 -16.82 16 15 C 0.51 13.17 7.77 87.65 0.68 13.85 16 16 O -0.58 -21.69 15.91 16.02 0.25 -21.43 16 17 C 0.05 0.75 4.76 71.23 0.34 1.09 16 18 O -0.39 -8.30 9.86 -129.94 -1.28 -9.58 16 19 C 0.15 1.99 6.11 71.23 0.44 2.42 16 20 C 0.16 3.33 7.66 137.97 1.06 4.39 16 21 N -0.32 -9.17 12.21 -50.16 -0.61 -9.78 16 22 N -0.35 -9.22 12.21 -59.99 -0.73 -9.96 16 23 C 0.17 2.60 12.74 180.11 2.30 4.90 16 24 N -0.47 -6.52 3.15 -542.09 -1.71 -8.23 16 25 C 0.06 0.23 10.89 127.77 1.39 1.63 16 26 C 0.11 1.90 6.37 86.51 0.55 2.45 16 27 C -0.14 -3.48 5.34 30.82 0.16 -3.31 16 28 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 29 H 0.01 0.79 7.22 -2.39 -0.02 0.77 16 30 H 0.03 1.16 6.46 -2.38 -0.02 1.15 16 31 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.06 2.24 7.86 -2.39 -0.02 2.22 16 33 H 0.04 1.61 7.72 -2.38 -0.02 1.59 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.27 7.00 -2.39 -0.02 2.26 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.12 0.99 7.93 -2.39 -0.02 0.97 16 38 H 0.12 0.92 7.70 -2.39 -0.02 0.91 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.11 0.54 7.85 -2.39 -0.02 0.52 16 41 H 0.26 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.09 0.45 7.81 -2.39 -0.02 0.43 16 44 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.12 1.02 5.93 -2.38 -0.01 1.01 16 47 H 0.06 1.54 6.72 -2.39 -0.02 1.53 16 48 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -89.11 388.18 4.75 -84.36 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: 0.96 Total: 3.33 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 10.02 Total: 27.76 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -7.22 Total: -130.46 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.03 Total: -31.02 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -89.11 4.75 -84.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725423527.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.227 kcal (2) G-P(sol) polarization free energy of solvation -89.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds