Wall clock time and date at job start Tue Mar 31 2020 21:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 113.99982 * 2 1 4 4 C 1.52997 * 109.47336 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47059 * 64.99980 * 4 3 2 6 6 C 1.36931 * 119.99835 * 264.43440 * 5 4 3 7 7 H 1.08002 * 120.00226 * 146.17342 * 6 5 4 8 8 C 1.38810 * 120.00065 * 326.16184 * 6 5 4 9 9 N 1.31618 * 120.00300 * 337.63837 * 8 6 5 10 10 Si 1.86804 * 119.99766 * 157.63670 * 8 6 5 11 11 H 1.48495 * 109.47386 * 60.00313 * 10 8 6 12 12 H 1.48499 * 109.47002 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47010 * 299.99916 * 10 8 6 14 14 C 1.46498 * 119.99832 * 84.43023 * 5 4 3 15 15 C 1.53001 * 109.47141 * 90.00323 * 14 5 4 16 16 N 1.46498 * 109.47141 * 179.97438 * 15 14 5 17 17 C 1.34777 * 119.99918 * 180.02562 * 16 15 14 18 18 O 1.21274 * 120.00199 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99860 * 179.97438 * 17 16 15 20 20 H 1.09002 * 109.72630 * 300.56440 * 19 17 16 21 21 C 1.53434 * 109.69252 * 179.97438 * 19 17 16 22 22 C 1.53104 * 109.54439 * 190.57546 * 21 19 17 23 23 C 1.53391 * 109.59502 * 70.06571 * 22 21 19 24 24 C 1.50592 * 108.32329 * 310.15599 * 23 22 21 25 25 N 1.32912 * 129.15948 * 196.58044 * 24 23 22 26 26 N 1.29024 * 108.62995 * 179.87284 * 25 24 23 27 27 N 1.29105 * 110.26119 * 0.02562 * 26 25 24 28 28 H 0.97003 * 126.00473 * 180.09119 * 27 26 25 29 29 C 1.34393 * 107.98412 * 0.05661 * 27 26 25 30 30 H 1.08997 * 109.47700 * 300.00255 * 1 2 3 31 31 H 1.09003 * 109.47550 * 59.99671 * 1 2 3 32 32 H 1.09001 * 109.47583 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47330 * 60.00088 * 3 2 1 34 34 H 1.08997 * 109.47440 * 300.00319 * 3 2 1 35 35 H 1.09002 * 109.47027 * 305.00581 * 4 3 2 36 36 H 1.09005 * 109.47442 * 184.99916 * 4 3 2 37 37 H 0.96997 * 120.00220 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.47425 * 330.00152 * 14 5 4 39 39 H 1.09004 * 109.47112 * 209.99819 * 14 5 4 40 40 H 1.08998 * 109.47100 * 59.99630 * 15 14 5 41 41 H 1.09004 * 109.46706 * 299.99744 * 15 14 5 42 42 H 0.97004 * 120.00078 * 359.97438 * 16 15 14 43 43 H 1.08995 * 109.45797 * 310.59964 * 21 19 17 44 44 H 1.09002 * 109.45672 * 70.56417 * 21 19 17 45 45 H 1.08999 * 109.45407 * 190.07631 * 22 21 19 46 46 H 1.09001 * 109.45505 * 310.01249 * 22 21 19 47 47 H 1.09001 * 109.69413 * 190.44807 * 23 22 21 48 48 H 1.09007 * 109.73577 * 69.88583 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2076 -0.7848 -1.3020 7 1 3.9968 -1.3348 -2.2072 8 6 4.7128 -1.4450 -0.1904 9 7 5.3724 -0.7743 0.7301 10 14 4.4564 -3.2857 -0.0009 11 1 5.0760 -3.9927 -1.1504 12 1 5.0872 -3.7458 1.2622 13 1 3.0016 -3.5816 0.0364 14 6 4.1707 1.3863 -2.4477 15 6 5.6135 1.8938 -2.4893 16 7 5.8077 2.7156 -3.6864 17 6 7.0099 3.2724 -3.9338 18 8 7.9307 3.0935 -3.1652 19 6 7.2098 4.1173 -5.1656 20 1 7.0007 3.5247 -6.0562 21 6 8.6555 4.6293 -5.2124 22 6 8.7877 5.6908 -6.3077 23 6 8.0411 6.9622 -5.8847 24 6 6.6569 6.5719 -5.4380 25 7 5.5813 7.3354 -5.2743 26 7 4.6035 6.5911 -4.8811 27 7 4.9897 5.3635 -4.7774 28 1 4.4394 4.6140 -4.5011 29 6 6.2879 5.3066 -5.1202 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8507 0.5684 0.8427 36 1 3.9784 2.1766 0.0902 37 1 5.7250 -1.2356 1.5071 38 1 3.4876 2.2352 -2.4200 39 1 3.9704 0.7875 -3.3363 40 1 6.2966 1.0449 -2.5170 41 1 5.8137 2.4925 -1.6007 42 1 5.0712 2.8584 -4.3014 43 1 8.9170 5.0669 -4.2490 44 1 9.3278 3.7990 -5.4285 45 1 9.8413 5.9236 -6.4623 46 1 8.3604 5.3104 -7.2354 47 1 7.9748 7.6476 -6.7297 48 1 8.5703 7.4435 -5.0622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725756093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:33 Heat of formation + Delta-G solvation = 29.580595 kcal Electronic energy + Delta-G solvation = -29864.084857 eV Core-core repulsion = 25763.895106 eV Total energy + Delta-G solvation = -4100.189751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.75267 -39.86995 -37.42095 -37.03750 -35.87547 -34.55985 -33.92012 -31.54451 -30.88978 -30.35393 -29.51137 -27.49432 -25.74049 -25.04557 -23.84700 -23.32474 -22.86196 -22.13300 -20.95600 -20.12385 -19.76908 -18.42465 -17.26267 -16.83697 -16.38875 -15.85979 -15.70446 -15.70333 -15.09324 -14.87187 -14.68499 -14.29241 -14.16963 -14.06988 -13.97743 -13.81589 -13.49575 -13.15512 -12.72222 -12.44571 -12.03139 -11.83965 -11.81373 -11.64493 -11.54598 -11.32884 -11.25944 -11.03996 -10.90557 -10.86158 -10.77271 -10.60061 -10.58378 -10.23545 -10.07075 -9.88527 -9.80526 -9.09825 -8.92781 -8.88918 -8.48981 -6.73394 -5.82144 -3.34546 1.24430 2.24222 2.34227 2.63418 3.13578 3.40350 3.46247 3.51525 3.96411 4.13121 4.36329 4.46836 4.54382 4.59606 4.59866 4.92271 4.96377 4.99924 5.12253 5.29253 5.30852 5.38123 5.57998 5.64519 5.66319 5.71838 5.73215 5.74696 5.75766 5.82878 5.97483 5.98732 6.04715 6.05654 6.10571 6.17922 6.44536 6.47745 6.51905 6.61327 6.65290 6.84895 7.46376 7.58813 7.78074 7.97491 8.16698 8.20906 8.46562 9.11382 9.76188 10.27712 11.21075 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.002825 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.532159 B = 9908.235543 C =11280.134323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.046 3.954 4 C 0.141 3.859 5 N -0.568 5.568 6 C -0.251 4.251 7 H 0.061 0.939 8 C 0.019 3.981 9 N -0.889 5.889 10 Si 0.901 3.099 11 H -0.284 1.284 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.138 3.862 15 C 0.095 3.905 16 N -0.730 5.730 17 C 0.508 3.492 18 O -0.518 6.518 19 C -0.034 4.034 20 H 0.118 0.882 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.036 4.036 24 C -0.006 4.006 25 N -0.258 5.258 26 N -0.081 5.081 27 N -0.379 5.379 28 H 0.446 0.554 29 C -0.008 4.008 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.111 0.889 36 H 0.039 0.961 37 H 0.256 0.744 38 H 0.035 0.965 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.383 0.617 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.841 11.402 -13.020 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C -0.033 4.033 4 C 0.014 3.986 5 N -0.287 5.287 6 C -0.381 4.381 7 H 0.078 0.922 8 C -0.181 4.181 9 N -0.532 5.532 10 Si 0.730 3.270 11 H -0.210 1.210 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.010 3.990 15 C -0.030 4.030 16 N -0.382 5.382 17 C 0.292 3.708 18 O -0.393 6.393 19 C -0.058 4.058 20 H 0.136 0.864 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.075 4.075 24 C -0.146 4.146 25 N -0.124 5.124 26 N -0.060 5.060 27 N -0.099 5.099 28 H 0.292 0.708 29 C -0.144 4.144 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.129 0.871 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.216 0.784 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.557 12.119 -12.126 17.153 hybrid contribution -0.515 -1.897 0.054 1.966 sum 0.042 10.222 -12.072 15.819 Atomic orbital electron populations 1.22638 0.84103 1.01558 0.98456 1.88206 1.16679 1.27660 1.94835 1.23392 0.98797 0.84152 0.96940 1.21100 0.87355 0.96979 0.93135 1.43660 1.75039 1.04164 1.05820 1.18876 1.37058 0.82258 0.99879 0.92167 1.25005 0.96348 0.97951 0.98835 1.69947 1.35204 1.35712 1.12307 0.86412 0.78224 0.85411 0.76916 1.21020 1.21794 1.20663 1.21110 0.91131 0.94083 0.92709 1.22624 1.01869 0.93919 0.84595 1.46427 1.11617 1.52651 1.27525 1.20350 0.83287 0.80357 0.86805 1.90757 1.40739 1.60108 1.47686 1.20119 0.95572 0.91506 0.98555 0.86425 1.21478 0.91993 0.99395 1.00809 1.21675 1.01128 0.94370 0.98538 1.20027 0.87429 0.98236 1.01778 1.21718 0.97646 0.89260 1.06006 1.74851 0.97136 1.26007 1.14441 1.78600 1.21261 0.86978 1.19161 1.44849 1.09124 1.10621 1.45306 0.70756 1.21497 0.86162 0.98856 1.07919 0.95447 0.95300 0.90653 0.95482 0.95585 0.87137 0.94325 0.93436 0.94638 0.93181 0.90489 0.91971 0.78433 0.89861 0.89609 0.89945 0.91209 0.89531 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.55 10.44 -35.23 -0.37 -7.92 16 3 C 0.05 0.89 6.28 37.16 0.23 1.13 16 4 C 0.14 3.13 5.63 -4.04 -0.02 3.11 16 5 N -0.57 -13.01 2.41 -173.24 -0.42 -13.42 16 6 C -0.25 -6.55 9.28 -15.06 -0.14 -6.69 16 7 H 0.06 1.58 7.92 -52.49 -0.42 1.16 16 8 C 0.02 0.51 4.91 -17.43 -0.09 0.42 16 9 N -0.89 -24.98 11.34 55.49 0.63 -24.35 16 10 Si 0.90 21.67 29.61 -169.99 -5.03 16.64 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 C 0.14 2.48 5.80 -4.04 -0.02 2.46 16 15 C 0.09 1.69 6.00 -4.04 -0.02 1.67 16 16 N -0.73 -9.53 5.11 -60.29 -0.31 -9.84 16 17 C 0.51 7.03 7.13 -10.98 -0.08 6.95 16 18 O -0.52 -9.53 15.83 5.56 0.09 -9.45 16 19 C -0.03 -0.33 2.90 -92.78 -0.27 -0.60 16 20 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 21 C -0.10 -0.87 4.67 -26.45 -0.12 -0.99 16 22 C -0.12 -0.76 5.89 -26.47 -0.16 -0.92 16 23 C -0.04 -0.28 6.30 -27.73 -0.17 -0.46 16 24 C -0.01 -0.07 7.11 -83.13 -0.59 -0.66 16 25 N -0.26 -3.54 12.40 33.16 0.41 -3.13 16 26 N -0.08 -1.08 13.40 60.35 0.81 -0.27 16 27 N -0.38 -4.04 6.77 33.39 0.23 -3.82 16 28 H 0.45 3.70 6.90 -190.07 -1.31 2.38 16 29 C -0.01 -0.09 6.38 -82.50 -0.53 -0.62 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.11 2.88 5.34 -51.93 -0.28 2.60 16 36 H 0.04 0.81 8.11 -51.93 -0.42 0.38 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.04 0.55 8.05 -51.93 -0.42 0.14 16 39 H 0.05 0.87 8.04 -51.93 -0.42 0.45 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.38 3.62 6.64 -40.82 -0.27 3.35 16 43 H 0.08 0.89 7.73 -51.93 -0.40 0.49 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -33.69 390.78 -7.51 -41.19 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.56 Total: 2.08 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.87 Total: 6.38 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 1.35 Total: -54.82 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.28 Total: -17.37 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.69 -7.51 -41.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725756093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.775 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds