Wall clock time and date at job start Tue Mar 31 2020 21:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 113.99982 * 2 1 4 4 C 1.52997 * 109.47336 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47059 * 64.99980 * 4 3 2 6 6 C 1.36931 * 119.99835 * 264.43440 * 5 4 3 7 7 H 1.08002 * 120.00226 * 146.17342 * 6 5 4 8 8 C 1.38810 * 120.00065 * 326.16184 * 6 5 4 9 9 N 1.31618 * 120.00300 * 337.63837 * 8 6 5 10 10 Si 1.86804 * 119.99766 * 157.63670 * 8 6 5 11 11 H 1.48495 * 109.47386 * 60.00313 * 10 8 6 12 12 H 1.48499 * 109.47002 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47010 * 299.99916 * 10 8 6 14 14 C 1.46498 * 119.99832 * 84.43023 * 5 4 3 15 15 C 1.53001 * 109.47141 * 90.00323 * 14 5 4 16 16 N 1.46498 * 109.47141 * 179.97438 * 15 14 5 17 17 C 1.34777 * 119.99918 * 180.02562 * 16 15 14 18 18 O 1.21274 * 120.00199 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99860 * 179.97438 * 17 16 15 20 20 H 1.09002 * 109.72630 * 300.56440 * 19 17 16 21 21 C 1.53434 * 109.69252 * 179.97438 * 19 17 16 22 22 C 1.53104 * 109.54439 * 190.57546 * 21 19 17 23 23 C 1.53391 * 109.59502 * 70.06571 * 22 21 19 24 24 C 1.50592 * 108.32329 * 310.15599 * 23 22 21 25 25 N 1.32912 * 129.15948 * 196.58044 * 24 23 22 26 26 N 1.29024 * 108.62995 * 179.87284 * 25 24 23 27 27 N 1.29105 * 110.26119 * 0.02562 * 26 25 24 28 28 H 0.97003 * 126.00473 * 180.09119 * 27 26 25 29 29 C 1.34393 * 107.98412 * 0.05661 * 27 26 25 30 30 H 1.08997 * 109.47700 * 300.00255 * 1 2 3 31 31 H 1.09003 * 109.47550 * 59.99671 * 1 2 3 32 32 H 1.09001 * 109.47583 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47330 * 60.00088 * 3 2 1 34 34 H 1.08997 * 109.47440 * 300.00319 * 3 2 1 35 35 H 1.09002 * 109.47027 * 305.00581 * 4 3 2 36 36 H 1.09005 * 109.47442 * 184.99916 * 4 3 2 37 37 H 0.96997 * 120.00220 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.47425 * 330.00152 * 14 5 4 39 39 H 1.09004 * 109.47112 * 209.99819 * 14 5 4 40 40 H 1.08998 * 109.47100 * 59.99630 * 15 14 5 41 41 H 1.09004 * 109.46706 * 299.99744 * 15 14 5 42 42 H 0.97004 * 120.00078 * 359.97438 * 16 15 14 43 43 H 1.08995 * 109.45797 * 310.59964 * 21 19 17 44 44 H 1.09002 * 109.45672 * 70.56417 * 21 19 17 45 45 H 1.08999 * 109.45407 * 190.07631 * 22 21 19 46 46 H 1.09001 * 109.45505 * 310.01249 * 22 21 19 47 47 H 1.09001 * 109.69413 * 190.44807 * 23 22 21 48 48 H 1.09007 * 109.73577 * 69.88583 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2076 -0.7848 -1.3020 7 1 3.9968 -1.3348 -2.2072 8 6 4.7128 -1.4450 -0.1904 9 7 5.3724 -0.7743 0.7301 10 14 4.4564 -3.2857 -0.0009 11 1 5.0760 -3.9927 -1.1504 12 1 5.0872 -3.7458 1.2622 13 1 3.0016 -3.5816 0.0364 14 6 4.1707 1.3863 -2.4477 15 6 5.6135 1.8938 -2.4893 16 7 5.8077 2.7156 -3.6864 17 6 7.0099 3.2724 -3.9338 18 8 7.9307 3.0935 -3.1652 19 6 7.2098 4.1173 -5.1656 20 1 7.0007 3.5247 -6.0562 21 6 8.6555 4.6293 -5.2124 22 6 8.7877 5.6908 -6.3077 23 6 8.0411 6.9622 -5.8847 24 6 6.6569 6.5719 -5.4380 25 7 5.5813 7.3354 -5.2743 26 7 4.6035 6.5911 -4.8811 27 7 4.9897 5.3635 -4.7774 28 1 4.4394 4.6140 -4.5011 29 6 6.2879 5.3066 -5.1202 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8507 0.5684 0.8427 36 1 3.9784 2.1766 0.0902 37 1 5.7250 -1.2356 1.5071 38 1 3.4876 2.2352 -2.4200 39 1 3.9704 0.7875 -3.3363 40 1 6.2966 1.0449 -2.5170 41 1 5.8137 2.4925 -1.6007 42 1 5.0712 2.8584 -4.3014 43 1 8.9170 5.0669 -4.2490 44 1 9.3278 3.7990 -5.4285 45 1 9.8413 5.9236 -6.4623 46 1 8.3604 5.3104 -7.2354 47 1 7.9748 7.6476 -6.7297 48 1 8.5703 7.4435 -5.0622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725756093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:32 Heat of formation + Delta-G solvation = 4.616644 kcal Electronic energy + Delta-G solvation = -29865.167375 eV Core-core repulsion = 25763.895106 eV Total energy + Delta-G solvation = -4101.272269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.63387 -41.03289 -38.94699 -37.92657 -37.36277 -35.91662 -34.95780 -33.36420 -31.85300 -31.16746 -30.92012 -29.08802 -27.13982 -26.14675 -25.24700 -24.39388 -23.83662 -23.39855 -22.15137 -21.70044 -20.54178 -19.39263 -18.70811 -18.21051 -17.46588 -17.23733 -17.06227 -16.74551 -16.64525 -16.41206 -15.94330 -15.56945 -15.35863 -15.24915 -14.92959 -14.89858 -14.74243 -14.44418 -14.11932 -13.61311 -13.45405 -13.19298 -12.95589 -12.72878 -12.69140 -12.51752 -12.45882 -12.39851 -12.28653 -12.24755 -12.02333 -11.97592 -11.82847 -11.66393 -11.54313 -11.38121 -11.06648 -10.48826 -10.36139 -10.22761 -9.97800 -8.63032 -7.81560 -5.35650 0.36472 1.30316 1.44120 1.46402 1.51430 1.56659 1.64858 2.01742 2.56217 3.16718 3.18467 3.28751 3.33442 3.52993 3.68300 3.79273 3.90915 4.16298 4.20994 4.27838 4.29214 4.32823 4.41902 4.46355 4.51452 4.58691 4.59388 4.65156 4.71955 4.81691 4.88914 4.92784 4.97892 4.99576 5.06822 5.11884 5.13299 5.19855 5.32914 5.36933 5.46667 5.69802 5.72962 5.78975 6.35042 6.42720 6.63836 7.06871 7.18391 7.29431 7.87630 8.34538 9.17803 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.002825 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.532159 B = 9908.235543 C =11280.134323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.055 3.945 4 C 0.139 3.861 5 N -0.583 5.583 6 C -0.246 4.246 7 H 0.058 0.942 8 C -0.030 4.030 9 N -0.919 5.919 10 Si 0.949 3.051 11 H -0.277 1.277 12 H -0.298 1.298 13 H -0.283 1.283 14 C 0.140 3.860 15 C 0.118 3.882 16 N -0.715 5.715 17 C 0.507 3.493 18 O -0.568 6.568 19 C -0.019 4.019 20 H 0.156 0.844 21 C -0.100 4.100 22 C -0.108 4.108 23 C -0.038 4.038 24 C -0.011 4.011 25 N -0.288 5.288 26 N -0.105 5.105 27 N -0.369 5.369 28 H 0.454 0.546 29 C -0.008 4.008 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.248 0.752 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.405 0.595 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 12.145 -15.564 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.023 4.023 4 C 0.012 3.988 5 N -0.303 5.303 6 C -0.377 4.377 7 H 0.075 0.925 8 C -0.227 4.227 9 N -0.564 5.564 10 Si 0.779 3.221 11 H -0.202 1.202 12 H -0.225 1.225 13 H -0.209 1.209 14 C 0.013 3.987 15 C -0.008 4.008 16 N -0.369 5.369 17 C 0.293 3.707 18 O -0.446 6.446 19 C -0.042 4.042 20 H 0.173 0.827 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.077 4.077 24 C -0.152 4.152 25 N -0.153 5.153 26 N -0.084 5.084 27 N -0.091 5.091 28 H 0.303 0.697 29 C -0.145 4.145 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.242 0.758 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.123 0.877 46 H 0.105 0.895 47 H 0.120 0.880 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.344 12.888 -14.722 19.569 hybrid contribution -0.286 -2.074 0.811 2.245 sum -0.629 10.813 -13.911 17.631 Atomic orbital electron populations 1.22825 0.81426 1.02660 1.00147 1.88128 1.19724 1.28713 1.95215 1.23194 0.96344 0.84055 0.98734 1.20986 0.89803 0.96229 0.91755 1.43806 1.75483 1.03875 1.07178 1.19068 1.35175 0.84059 0.99374 0.92478 1.25564 0.97115 1.00828 0.99208 1.70085 1.37014 1.36579 1.12742 0.85628 0.77659 0.82240 0.76592 1.20243 1.22500 1.20927 1.21209 0.91469 0.94810 0.91171 1.21969 1.00838 0.92537 0.85472 1.46097 1.12624 1.51656 1.26488 1.21111 0.82348 0.79855 0.87421 1.90746 1.42354 1.61843 1.49610 1.20169 0.96064 0.90701 0.97304 0.82660 1.21528 0.91276 1.00361 1.00696 1.21652 1.02431 0.92548 0.97896 1.20221 0.85717 0.99431 1.02363 1.22310 0.98371 0.89162 1.05318 1.74829 0.98033 1.26939 1.15484 1.78550 1.21734 0.87814 1.20279 1.44849 1.09317 1.10370 1.44541 0.69708 1.21646 0.86087 0.99026 1.07729 0.93672 0.93538 0.89986 0.93603 0.93579 0.91057 0.93726 0.94310 0.91256 0.91901 0.94645 0.94772 0.75834 0.92276 0.88939 0.87734 0.89520 0.88041 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.43 10.44 -148.98 -1.56 -17.99 16 3 C 0.06 2.05 6.28 71.98 0.45 2.50 16 4 C 0.14 6.19 5.63 86.38 0.49 6.68 16 5 N -0.58 -26.66 2.41 -702.00 -1.69 -28.35 16 6 C -0.25 -12.93 9.28 84.03 0.78 -12.15 16 7 H 0.06 2.98 7.92 -2.91 -0.02 2.96 16 8 C -0.03 -1.67 4.91 84.86 0.42 -1.25 16 9 N -0.92 -53.57 11.34 21.65 0.25 -53.32 16 10 Si 0.95 45.33 29.61 68.60 2.03 47.37 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 13 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 14 C 0.14 4.86 5.80 86.38 0.50 5.36 16 15 C 0.12 4.25 6.00 86.38 0.52 4.77 16 16 N -0.72 -17.72 5.11 -463.06 -2.37 -20.09 16 17 C 0.51 13.50 7.13 87.66 0.63 14.13 16 18 O -0.57 -21.19 15.83 -3.01 -0.05 -21.24 16 19 C -0.02 -0.32 2.90 -12.19 -0.04 -0.36 16 20 H 0.16 1.53 8.14 -2.39 -0.02 1.51 16 21 C -0.10 -1.56 4.67 30.77 0.14 -1.41 16 22 C -0.11 -1.01 5.89 30.76 0.18 -0.83 16 23 C -0.04 -0.51 6.30 29.95 0.19 -0.33 16 24 C -0.01 -0.23 7.11 41.75 0.30 0.07 16 25 N -0.29 -7.55 12.40 -49.00 -0.61 -8.16 16 26 N -0.11 -2.67 13.40 37.02 0.50 -2.17 16 27 N -0.37 -7.18 6.77 -48.27 -0.33 -7.51 16 28 H 0.45 6.47 6.90 -219.68 -1.52 4.95 16 29 C -0.01 -0.16 6.38 41.50 0.26 0.11 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.05 1.51 8.12 -2.39 -0.02 1.49 16 35 H 0.07 3.83 5.34 -2.39 -0.01 3.82 16 36 H 0.04 1.87 8.11 -2.38 -0.02 1.85 16 37 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.07 1.95 8.05 -2.39 -0.02 1.93 16 39 H 0.06 2.04 8.04 -2.38 -0.02 2.02 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.41 6.56 6.64 -92.71 -0.62 5.94 16 43 H 0.06 1.23 7.73 -2.39 -0.02 1.21 16 44 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.09 0.59 8.12 -2.39 -0.02 0.57 16 47 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.09 1.16 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -76.95 390.78 1.10 -75.85 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -1.15 Total: 16.33 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 6.07 Total: 19.29 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -4.25 Total: -119.60 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.60 Total: -39.23 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.37 kcal Total: -76.95 1.10 -75.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725756093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.465 kcal (2) G-P(sol) polarization free energy of solvation -76.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds